Wall clock time and date at job start Tue Mar 31 2020 12:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76199 * 102.99728 * 2 1 4 4 C 1.38992 * 120.04404 * 0.02562 * 3 2 1 5 5 C 1.38314 * 120.00634 * 179.97438 * 4 3 2 6 6 F 1.35103 * 119.95757 * 179.97438 * 5 4 3 7 7 C 1.38457 * 120.08603 * 0.02562 * 5 4 3 8 8 C 1.38741 * 120.08064 * 359.97438 * 7 5 4 9 9 O 1.35895 * 120.00757 * 180.02562 * 8 7 5 10 10 C 1.42898 * 116.99495 * 4.64742 * 9 8 7 11 11 H 1.08996 * 109.47546 * 39.40862 * 10 9 8 12 12 C 1.50702 * 109.47307 * 279.40025 * 10 9 8 13 13 H 1.08006 * 119.99503 * 125.50479 * 12 10 9 14 14 C 1.37875 * 120.00082 * 305.50676 * 12 10 9 15 15 N 1.31507 * 120.00164 * 9.41252 * 14 12 10 16 16 Si 1.86804 * 119.99657 * 189.41272 * 14 12 10 17 17 H 1.48504 * 109.46723 * 90.00170 * 16 14 12 18 18 H 1.48501 * 109.46707 * 210.00008 * 16 14 12 19 19 H 1.48491 * 109.47128 * 330.00081 * 16 14 12 20 20 C 1.50703 * 109.46932 * 159.40397 * 10 9 8 21 21 C 1.38236 * 120.00050 * 31.13056 * 20 10 9 22 22 C 1.38236 * 120.00291 * 179.80871 * 21 20 10 23 23 C 1.38241 * 119.99749 * 0.40266 * 22 21 20 24 24 C 1.38233 * 119.99711 * 359.84860 * 23 22 21 25 25 C 1.38233 * 120.00605 * 359.96525 * 24 23 22 26 26 C 1.38615 * 119.99192 * 359.97438 * 8 7 5 27 27 H 1.09005 * 109.47174 * 299.99937 * 1 2 3 28 28 H 1.08997 * 109.47285 * 60.00251 * 1 2 3 29 29 H 1.08998 * 109.47068 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99436 * 0.25658 * 4 3 2 31 31 H 1.08009 * 119.96365 * 180.02562 * 7 5 4 32 32 H 0.97000 * 120.00197 * 179.97438 * 15 14 12 33 33 H 1.08005 * 119.99958 * 0.02562 * 21 20 10 34 34 H 1.08001 * 120.00450 * 180.23107 * 22 21 20 35 35 H 1.07998 * 119.99763 * 179.83852 * 23 22 21 36 36 H 1.08001 * 119.99509 * 179.97438 * 24 23 22 37 37 H 1.07990 * 120.00280 * 179.97438 * 25 24 23 38 38 H 1.08003 * 120.04074 * 180.02562 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1944 2.6655 0.0005 5 6 1.5064 4.0130 0.0011 6 9 0.5182 4.9343 0.0011 7 6 2.8301 4.4190 0.0005 8 6 3.8470 3.4751 0.0000 9 8 5.1457 3.8752 0.0000 10 6 5.3919 5.2790 0.1037 11 1 4.6883 5.7202 0.8097 12 6 5.2163 5.9211 -1.2483 13 1 4.5382 6.7534 -1.3668 14 6 5.9212 5.4461 -2.3339 15 7 6.6015 4.3249 -2.2366 16 14 5.9097 6.3953 -3.9428 17 1 7.0332 7.3664 -3.9525 18 1 6.0635 5.4489 -5.0768 19 1 4.6235 7.1249 -4.0779 20 6 6.8002 5.5075 0.5892 21 6 7.7979 4.6075 0.2641 22 6 9.0905 4.8191 0.7061 23 6 9.3837 5.9263 1.4801 24 6 8.3850 6.8235 1.8095 25 6 7.0932 6.6140 1.3643 26 6 3.5381 2.1238 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 0.1614 2.3504 0.0051 31 1 3.0715 5.4718 0.0014 32 1 7.0971 3.9905 -3.0005 33 1 7.5681 3.7409 -0.3381 34 1 9.8707 4.1180 0.4490 35 1 10.3931 6.0902 1.8276 36 1 8.6141 7.6882 2.4145 37 1 6.3129 7.3146 1.6220 38 1 4.3290 1.3884 0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234295866.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:06 Heat of formation + Delta-G solvation = -39.667827 kcal Electronic energy + Delta-G solvation = -23794.748093 eV Core-core repulsion = 20221.849056 eV Total energy + Delta-G solvation = -3572.899037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.96128 -40.92808 -39.67490 -37.93459 -34.89666 -32.60431 -31.77827 -31.46365 -31.02752 -29.38421 -28.79409 -25.38257 -23.95281 -23.52249 -22.92563 -21.82971 -19.87533 -18.48193 -17.98982 -17.48494 -17.08224 -17.03079 -16.78699 -16.64822 -16.53502 -15.73612 -15.53658 -15.16207 -15.05057 -14.83860 -14.59552 -14.11502 -13.98087 -13.88410 -13.69835 -13.42729 -13.27048 -12.91855 -12.87072 -12.69435 -12.48654 -12.34913 -12.15280 -11.77586 -11.35680 -11.27068 -11.17239 -10.69654 -10.40602 -9.54555 -9.30419 -9.06113 -8.41961 -8.14019 -6.39994 0.06979 0.35446 0.48207 0.71985 0.84525 1.35180 1.38227 1.44767 1.44889 2.34035 2.57927 2.69803 3.14354 3.22826 3.28146 3.96226 4.06917 4.19151 4.23979 4.26454 4.30506 4.32132 4.35726 4.45585 4.53339 4.67080 4.83191 4.88110 4.96488 5.06401 5.08583 5.11954 5.33339 5.44170 5.51447 5.58050 5.74837 5.79535 5.88163 5.96951 6.18319 6.41219 6.52506 6.97562 7.35495 8.80353 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.013009 B = 0.004356 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.767021 B = 6426.026454 C = 7030.535428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.116 6.116 3 C -0.024 4.024 4 C -0.221 4.221 5 C 0.144 3.856 6 F -0.141 7.141 7 C -0.256 4.256 8 C 0.198 3.802 9 O -0.294 6.294 10 C 0.240 3.760 11 H 0.034 0.966 12 C -0.569 4.569 13 H 0.059 0.941 14 C 0.051 3.949 15 N -0.853 5.853 16 Si 0.939 3.061 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.272 1.272 20 C -0.064 4.064 21 C -0.093 4.093 22 C -0.147 4.147 23 C -0.138 4.138 24 C -0.132 4.132 25 C -0.138 4.138 26 C -0.174 4.174 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.134 0.866 30 H 0.160 0.840 31 H 0.134 0.866 32 H 0.263 0.737 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.121 0.879 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.172 -4.806 6.065 9.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.126 5.874 3 C -0.137 4.137 4 C -0.246 4.246 5 C 0.123 3.877 6 F -0.119 7.119 7 C -0.278 4.278 8 C 0.147 3.853 9 O -0.206 6.206 10 C 0.186 3.814 11 H 0.052 0.948 12 C -0.606 4.606 13 H 0.077 0.923 14 C -0.156 4.156 15 N -0.486 5.486 16 Si 0.765 3.235 17 H -0.201 1.201 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.064 4.064 21 C -0.111 4.111 22 C -0.165 4.165 23 C -0.156 4.156 24 C -0.150 4.150 25 C -0.156 4.156 26 C -0.199 4.199 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.152 0.848 30 H 0.178 0.822 31 H 0.152 0.848 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.139 0.861 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.261 -6.077 5.958 10.005 hybrid contribution -0.873 2.187 -1.302 2.691 sum -6.134 -3.890 4.656 8.628 Atomic orbital electron populations 1.23857 0.91402 1.08881 1.06742 1.85474 1.09966 0.99841 1.92134 1.21247 0.94347 0.98112 0.99995 1.20963 1.00413 0.90135 1.13045 1.17302 0.83974 0.86317 1.00086 1.91454 1.60573 1.66073 1.93839 1.21305 0.91712 1.01398 1.13398 1.18810 0.84718 0.92473 0.89306 1.86236 1.20297 1.29479 1.84543 1.18971 0.90653 0.76788 0.94969 0.94846 1.21451 1.27364 1.18185 0.93594 0.92327 1.25502 0.94081 0.94812 1.01163 1.70075 1.29093 1.18390 1.31085 0.85862 0.78569 0.79006 0.80107 1.20066 1.20774 1.19687 1.19968 0.95891 0.95432 0.95125 1.21401 0.92632 1.00328 0.96778 1.21406 0.96390 0.99111 0.99609 1.21317 1.00003 0.94833 0.99469 1.21236 0.92235 1.00304 1.01209 1.21022 0.98062 0.97446 0.99115 1.20025 0.95599 0.93274 1.10997 0.88569 0.88958 0.84811 0.82239 0.84842 0.92726 0.85858 0.85627 0.83853 0.83697 0.86149 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.15 113.37 1.04 -1.11 16 2 S -0.12 -2.93 22.56 -56.49 -1.27 -4.21 16 3 C -0.02 -0.80 6.11 22.60 0.14 -0.66 16 4 C -0.22 -6.96 9.34 22.47 0.21 -6.75 16 5 C 0.14 5.30 7.29 22.34 0.16 5.46 16 6 F -0.14 -4.93 17.26 44.97 0.78 -4.15 16 7 C -0.26 -10.88 8.60 22.44 0.19 -10.69 16 8 C 0.20 8.88 6.55 22.48 0.15 9.02 16 9 O -0.29 -14.65 7.69 -92.37 -0.71 -15.36 16 10 C 0.24 11.73 2.12 29.10 0.06 11.79 16 11 H 0.03 1.58 6.49 -2.39 -0.02 1.56 16 12 C -0.57 -29.83 7.55 25.60 0.19 -29.64 16 13 H 0.06 3.08 7.83 -2.91 -0.02 3.05 16 14 C 0.05 2.70 5.21 84.66 0.44 3.14 16 15 N -0.85 -45.74 9.43 21.45 0.20 -45.54 16 16 Si 0.94 42.51 29.55 68.60 2.03 44.54 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 C -0.06 -2.94 4.84 -19.86 -0.10 -3.03 16 21 C -0.09 -4.26 8.12 22.27 0.18 -4.08 16 22 C -0.15 -5.59 10.05 22.27 0.22 -5.37 16 23 C -0.14 -4.52 10.05 22.27 0.22 -4.30 16 24 C -0.13 -4.38 10.05 22.27 0.22 -4.16 16 25 C -0.14 -5.46 9.70 22.27 0.22 -5.25 16 26 C -0.17 -6.92 9.73 22.51 0.22 -6.70 16 27 H 0.10 1.31 7.74 -2.39 -0.02 1.29 16 28 H 0.09 1.34 7.75 -2.39 -0.02 1.32 16 29 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.16 3.85 5.87 -2.91 -0.02 3.83 16 31 H 0.13 5.96 5.59 -2.91 -0.02 5.94 16 32 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 33 H 0.12 6.31 5.86 -2.91 -0.02 6.29 16 34 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 35 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 36 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 37 H 0.12 4.34 8.06 -2.92 -0.02 4.32 16 38 H 0.13 5.12 8.06 -2.91 -0.02 5.09 16 Total: -1.00 -59.69 336.13 5.88 -53.81 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 1.09 Total: 23.23 kcal Atomic # 6 Polarization: -56.09 SS G_CDS: 3.78 Total: -52.31 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.20 Total: -45.54 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.71 Total: -15.36 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.78 Total: -4.15 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: -2.93 SS G_CDS: -1.27 Total: -4.21 kcal Total: -59.69 5.88 -53.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234295866.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.142 kcal (2) G-P(sol) polarization free energy of solvation -59.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds