Wall clock time and date at job start Tue Mar 31 2020 12:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46947 * 93.20855 * 3 2 1 5 5 N 1.46905 * 109.46991 * 179.84465 * 4 3 2 6 6 C 1.46898 * 111.00053 * 298.46464 * 5 4 3 7 7 C 1.50707 * 109.46831 * 293.12716 * 6 5 4 8 8 H 1.07995 * 120.00140 * 354.95659 * 7 6 5 9 9 C 1.37881 * 119.99666 * 174.95504 * 7 6 5 10 10 N 1.31511 * 120.00415 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99738 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46929 * 59.99958 * 11 9 7 13 13 H 1.48497 * 109.47116 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46922 * 300.00341 * 11 9 7 15 15 C 1.46905 * 110.99860 * 62.41700 * 5 4 3 16 16 C 1.50700 * 109.46997 * 66.04786 * 15 5 4 17 17 C 1.34458 * 126.50425 * 260.01956 * 16 15 5 18 18 N 1.36673 * 109.96834 * 179.97438 * 17 16 15 19 19 H 0.97003 * 125.05273 * 179.73651 * 18 17 16 20 20 C 1.37600 * 109.89554 * 359.97438 * 18 17 16 21 21 C 1.38824 * 134.44673 * 179.97438 * 20 18 17 22 22 N 1.31771 * 120.29312 * 180.02562 * 21 20 18 23 23 C 1.32376 * 122.55192 * 0.02562 * 22 21 20 24 24 Cl 1.73597 * 119.35618 * 179.97438 * 23 22 21 25 25 C 1.36777 * 121.28811 * 359.97438 * 23 22 21 26 26 C 1.39803 * 118.69440 * 0.02562 * 25 23 22 27 27 H 1.08997 * 109.46894 * 333.20808 * 3 2 1 28 28 H 1.08998 * 109.46902 * 213.20746 * 3 2 1 29 29 H 1.08996 * 109.47580 * 59.84600 * 4 3 2 30 30 H 1.09004 * 109.47073 * 299.84072 * 4 3 2 31 31 H 1.09000 * 109.47423 * 53.12312 * 6 5 4 32 32 H 1.09001 * 109.47480 * 173.13075 * 6 5 4 33 33 H 0.96995 * 120.00324 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.46978 * 306.04575 * 15 5 4 35 35 H 1.09002 * 109.46810 * 186.04650 * 15 5 4 36 36 H 1.07995 * 125.02056 * 359.94589 * 17 16 15 37 37 H 1.07997 * 119.85438 * 359.97438 * 21 20 18 38 38 H 1.08004 * 120.65344 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.0816 -1.4402 5 7 4.5870 0.0860 -1.4400 6 6 5.1098 1.2554 -0.7209 7 6 4.7652 2.5091 -1.4830 8 1 4.2852 2.4398 -2.4480 9 6 5.0625 3.7446 -0.9481 10 7 5.6474 3.8291 0.2268 11 14 4.6360 5.2986 -1.8929 12 1 3.1698 5.3509 -2.1236 13 1 5.0556 6.4866 -1.1070 14 1 5.3427 5.2934 -3.1990 15 6 5.1171 -1.1611 -0.8728 16 6 4.7621 -2.3143 -1.7757 17 6 3.7532 -3.1858 -1.6011 18 7 3.7396 -4.0947 -2.6217 19 1 3.1052 -4.8231 -2.7107 20 6 4.7629 -3.8261 -3.5016 21 6 5.2089 -4.4075 -4.6807 22 7 6.2494 -3.9077 -5.3162 23 6 6.9117 -2.8494 -4.8762 24 17 8.2722 -2.2607 -5.7797 25 6 6.5452 -2.2106 -3.7237 26 6 5.4478 -2.6967 -3.0067 27 1 2.9717 -0.9165 0.4632 28 1 2.9709 0.8607 0.5628 29 1 2.7520 0.9974 -1.9044 30 1 2.7573 -0.7799 -2.0023 31 1 4.6641 1.3001 0.2727 32 1 6.1928 1.1717 -0.6300 33 1 5.8562 4.6983 0.6033 34 1 4.6831 -1.3249 0.1135 35 1 6.2011 -1.0885 -0.7853 36 1 3.0567 -3.1702 -0.7759 37 1 4.7013 -5.2738 -5.0785 38 1 7.0927 -1.3477 -3.3743 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235511311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:31 Heat of formation + Delta-G solvation = 95.568494 kcal Electronic energy + Delta-G solvation = -23483.875489 eV Core-core repulsion = 19967.009746 eV Total energy + Delta-G solvation = -3516.865743 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.69115 -38.48369 -37.70207 -36.30001 -35.99398 -33.02023 -32.46775 -30.78659 -30.08593 -29.68421 -27.12919 -25.26026 -23.89436 -23.43787 -22.55137 -20.47793 -19.38203 -18.28052 -17.46225 -17.02965 -16.26652 -16.02034 -15.51833 -15.16406 -14.90919 -14.64807 -14.40284 -14.13488 -13.82742 -13.70041 -13.29649 -13.03357 -12.80213 -12.34218 -12.11999 -11.95261 -11.80686 -11.53507 -11.38426 -11.21261 -11.14214 -11.11832 -10.78602 -10.62626 -10.27607 -10.03505 -9.88963 -9.75200 -9.33835 -8.65524 -8.49532 -7.87045 -7.39003 -6.09825 -4.11224 0.83916 1.27136 1.97671 2.53947 2.90853 3.02040 3.04424 3.31332 3.35969 3.39425 3.73966 4.26671 4.36914 4.39506 4.58995 4.75357 4.80273 4.98904 5.18162 5.24882 5.26658 5.34985 5.49918 5.55117 5.66607 5.70684 5.85619 6.04743 6.14612 6.24549 6.26985 6.52855 6.59571 6.76815 7.12776 7.18589 7.25996 7.71628 7.75810 7.80050 7.95381 8.04294 8.41167 8.96684 9.54241 11.00208 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010117 B = 0.004444 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.874596 B = 6299.125683 C = 8426.129220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.224 3.776 3 C -0.075 4.075 4 C 0.074 3.926 5 N -0.521 5.521 6 C 0.186 3.814 7 C -0.509 4.509 8 H 0.063 0.937 9 C 0.060 3.940 10 N -0.897 5.897 11 Si 0.893 3.107 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.114 3.886 16 C -0.137 4.137 17 C 0.061 3.939 18 N -0.581 5.581 19 H 0.418 0.582 20 C 0.037 3.963 21 C 0.125 3.875 22 N -0.466 5.466 23 C 0.125 3.875 24 Cl -0.042 7.042 25 C -0.080 4.080 26 C -0.046 4.046 27 H 0.098 0.902 28 H 0.124 0.876 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.005 0.995 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.173 0.827 37 H 0.159 0.841 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.248 -17.301 -3.327 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.094 4.094 3 C -0.117 4.117 4 C -0.056 4.056 5 N -0.244 5.244 6 C 0.062 3.938 7 C -0.548 4.548 8 H 0.082 0.918 9 C -0.142 4.142 10 N -0.536 5.536 11 Si 0.721 3.279 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.201 1.201 15 C -0.014 4.014 16 C -0.145 4.145 17 C -0.068 4.068 18 N -0.184 5.184 19 H 0.256 0.744 20 C -0.074 4.074 21 C -0.044 4.044 22 N -0.176 5.176 23 C -0.032 4.032 24 Cl -0.013 7.013 25 C -0.102 4.102 26 C -0.057 4.057 27 H 0.116 0.884 28 H 0.141 0.859 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.023 0.977 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.190 0.810 37 H 0.176 0.824 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.292 -17.468 -4.540 18.095 hybrid contribution -0.506 1.035 1.035 1.549 sum -1.798 -16.433 -3.505 16.898 Atomic orbital electron populations 1.81151 1.13226 1.09919 1.09703 1.29321 0.95308 0.92323 0.92414 1.20276 0.81430 1.05644 1.04346 1.22025 0.89308 1.03013 0.91296 1.62381 1.04852 1.01908 1.55217 1.19873 0.95599 0.86022 0.92302 1.21082 1.39418 0.89738 1.04567 0.91847 1.24927 0.95237 0.99092 0.94947 1.69916 1.41962 1.24883 1.16871 0.86636 0.78830 0.82434 0.80014 1.20327 1.21404 1.20104 1.20498 1.00729 0.87322 0.92857 1.20281 0.97700 0.99557 0.96915 1.21825 1.00192 0.91459 0.93324 1.41562 1.27617 1.28615 1.20622 0.74430 1.19371 0.93151 0.99406 0.95429 1.21495 0.93432 0.99476 0.89957 1.66834 1.06913 1.11426 1.32435 1.20737 0.94051 0.95273 0.93116 1.98382 1.41341 1.86220 1.75391 1.20988 0.96149 1.00117 0.92908 1.19085 0.95733 0.94907 0.96020 0.88419 0.85864 0.89146 0.91939 0.97720 0.95089 0.92807 0.94057 0.89959 0.80968 0.82427 0.83261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.85 18.54 42.15 0.78 -7.07 16 2 C 0.22 3.31 15.43 -20.76 -0.32 2.99 16 3 C -0.08 -1.00 5.05 -29.52 -0.15 -1.15 16 4 C 0.07 1.14 4.94 -3.82 -0.02 1.12 16 5 N -0.52 -8.92 4.69 -237.50 -1.11 -10.03 16 6 C 0.19 4.02 4.52 -4.97 -0.02 4.00 16 7 C -0.51 -12.73 8.40 -34.44 -0.29 -13.02 16 8 H 0.06 1.61 7.36 -52.49 -0.39 1.22 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -24.49 13.29 55.43 0.74 -23.75 16 11 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.11 1.56 5.29 -4.97 -0.03 1.53 16 16 C -0.14 -1.67 4.91 -102.85 -0.50 -2.18 16 17 C 0.06 0.56 10.99 -16.73 -0.18 0.38 16 18 N -0.58 -4.80 6.06 -10.64 -0.06 -4.87 16 19 H 0.42 1.99 8.96 -40.82 -0.37 1.62 16 20 C 0.04 0.41 7.33 -83.99 -0.62 -0.20 16 21 C 0.13 1.37 11.24 -17.36 -0.20 1.18 16 22 N -0.47 -6.36 10.29 -10.52 -0.11 -6.47 16 23 C 0.12 1.77 7.23 -17.85 -0.13 1.64 16 24 Cl -0.04 -0.56 29.08 -51.86 -1.51 -2.07 16 25 C -0.08 -1.14 9.86 -39.53 -0.39 -1.53 16 26 C -0.05 -0.61 6.42 -105.14 -0.67 -1.28 16 27 H 0.10 1.00 6.34 -51.93 -0.33 0.67 16 28 H 0.12 1.90 6.28 -51.93 -0.33 1.57 16 29 H 0.09 1.63 6.98 -51.93 -0.36 1.26 16 30 H 0.06 0.87 6.64 -51.93 -0.34 0.52 16 31 H 0.01 0.11 6.01 -51.93 -0.31 -0.20 16 32 H 0.03 0.73 7.91 -51.93 -0.41 0.32 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.04 0.48 6.08 -51.93 -0.32 0.17 16 35 H 0.08 1.18 7.92 -51.93 -0.41 0.76 16 36 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.15 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -30.43 342.85 -8.72 -39.14 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -3.97 Total: -0.60 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -3.62 Total: -5.07 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.23 Total: -52.19 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.51 Total: -2.07 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.43 -8.72 -39.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235511311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.713 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds