Wall clock time and date at job start Tue Mar 31 2020 12:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52999 * 109.46947 * 93.20855 * 3 2 1 5 5 N 1.46905 * 109.46991 * 179.84465 * 4 3 2 6 6 C 1.46898 * 111.00053 * 298.46464 * 5 4 3 7 7 C 1.50707 * 109.46831 * 293.12716 * 6 5 4 8 8 H 1.07995 * 120.00140 * 354.95659 * 7 6 5 9 9 C 1.37881 * 119.99666 * 174.95504 * 7 6 5 10 10 N 1.31511 * 120.00415 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99738 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46929 * 59.99958 * 11 9 7 13 13 H 1.48497 * 109.47116 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46922 * 300.00341 * 11 9 7 15 15 C 1.46905 * 110.99860 * 62.41700 * 5 4 3 16 16 C 1.50700 * 109.46997 * 66.04786 * 15 5 4 17 17 C 1.34458 * 126.50425 * 260.01956 * 16 15 5 18 18 N 1.36673 * 109.96834 * 179.97438 * 17 16 15 19 19 H 0.97003 * 125.05273 * 179.73651 * 18 17 16 20 20 C 1.37600 * 109.89554 * 359.97438 * 18 17 16 21 21 C 1.38824 * 134.44673 * 179.97438 * 20 18 17 22 22 N 1.31771 * 120.29312 * 180.02562 * 21 20 18 23 23 C 1.32376 * 122.55192 * 0.02562 * 22 21 20 24 24 Cl 1.73597 * 119.35618 * 179.97438 * 23 22 21 25 25 C 1.36777 * 121.28811 * 359.97438 * 23 22 21 26 26 C 1.39803 * 118.69440 * 0.02562 * 25 23 22 27 27 H 1.08997 * 109.46894 * 333.20808 * 3 2 1 28 28 H 1.08998 * 109.46902 * 213.20746 * 3 2 1 29 29 H 1.08996 * 109.47580 * 59.84600 * 4 3 2 30 30 H 1.09004 * 109.47073 * 299.84072 * 4 3 2 31 31 H 1.09000 * 109.47423 * 53.12312 * 6 5 4 32 32 H 1.09001 * 109.47480 * 173.13075 * 6 5 4 33 33 H 0.96995 * 120.00324 * 180.02562 * 10 9 7 34 34 H 1.09002 * 109.46978 * 306.04575 * 15 5 4 35 35 H 1.09002 * 109.46810 * 186.04650 * 15 5 4 36 36 H 1.07995 * 125.02056 * 359.94589 * 17 16 15 37 37 H 1.07997 * 119.85438 * 359.97438 * 21 20 18 38 38 H 1.08004 * 120.65344 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.0816 -1.4402 5 7 4.5870 0.0860 -1.4400 6 6 5.1098 1.2554 -0.7209 7 6 4.7652 2.5091 -1.4830 8 1 4.2852 2.4398 -2.4480 9 6 5.0625 3.7446 -0.9481 10 7 5.6474 3.8291 0.2268 11 14 4.6360 5.2986 -1.8929 12 1 3.1698 5.3509 -2.1236 13 1 5.0556 6.4866 -1.1070 14 1 5.3427 5.2934 -3.1990 15 6 5.1171 -1.1611 -0.8728 16 6 4.7621 -2.3143 -1.7757 17 6 3.7532 -3.1858 -1.6011 18 7 3.7396 -4.0947 -2.6217 19 1 3.1052 -4.8231 -2.7107 20 6 4.7629 -3.8261 -3.5016 21 6 5.2089 -4.4075 -4.6807 22 7 6.2494 -3.9077 -5.3162 23 6 6.9117 -2.8494 -4.8762 24 17 8.2722 -2.2607 -5.7797 25 6 6.5452 -2.2106 -3.7237 26 6 5.4478 -2.6967 -3.0067 27 1 2.9717 -0.9165 0.4632 28 1 2.9709 0.8607 0.5628 29 1 2.7520 0.9974 -1.9044 30 1 2.7573 -0.7799 -2.0023 31 1 4.6641 1.3001 0.2727 32 1 6.1928 1.1717 -0.6300 33 1 5.8562 4.6983 0.6033 34 1 4.6831 -1.3249 0.1135 35 1 6.2011 -1.0885 -0.7853 36 1 3.0567 -3.1702 -0.7759 37 1 4.7013 -5.2738 -5.0785 38 1 7.0927 -1.3477 -3.3743 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235511311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:29 Heat of formation + Delta-G solvation = 76.021851 kcal Electronic energy + Delta-G solvation = -23484.723095 eV Core-core repulsion = 19967.009746 eV Total energy + Delta-G solvation = -3517.713350 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.094 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -42.55127 -39.52816 -38.86195 -37.34116 -37.23883 -34.72698 -33.62176 -31.88066 -31.25732 -30.65745 -28.67510 -26.44776 -25.14923 -24.69214 -23.48014 -21.82129 -20.36532 -19.17817 -18.67153 -18.18787 -17.86655 -16.96384 -16.87012 -16.32791 -16.05462 -15.82699 -15.58950 -15.23487 -15.13964 -14.86803 -14.34879 -14.23956 -13.90313 -13.73047 -13.46893 -13.24871 -12.96986 -12.87048 -12.77610 -12.54962 -12.44009 -12.31057 -12.26028 -12.16639 -11.83716 -11.40308 -11.22757 -10.93263 -10.70844 -10.48670 -9.51953 -8.85530 -8.66863 -8.09432 -6.15457 -0.06756 0.33606 0.97894 1.45250 1.46766 1.53009 1.68075 1.82902 1.85873 2.17727 2.47123 2.78962 3.09323 3.24484 3.50924 3.66949 3.76290 3.92094 3.97933 4.24671 4.27203 4.38525 4.43706 4.57379 4.61244 4.72721 4.82967 4.93864 5.04278 5.20926 5.27501 5.37472 5.47830 5.52102 5.62559 5.78918 5.90481 6.21877 6.46412 6.65452 6.65892 6.81015 6.83285 7.01715 7.53347 8.98882 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010117 B = 0.004444 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.874596 B = 6299.125683 C = 8426.129220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C 0.246 3.754 3 C -0.062 4.062 4 C 0.080 3.920 5 N -0.533 5.533 6 C 0.201 3.799 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.014 3.986 10 N -0.926 5.926 11 Si 0.944 3.056 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.120 3.880 16 C -0.172 4.172 17 C 0.095 3.905 18 N -0.558 5.558 19 H 0.440 0.560 20 C 0.034 3.966 21 C 0.138 3.862 22 N -0.491 5.491 23 C 0.113 3.887 24 Cl -0.049 7.049 25 C -0.103 4.103 26 C -0.068 4.068 27 H 0.141 0.859 28 H 0.104 0.896 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.001 0.999 32 H 0.004 0.996 33 H 0.261 0.739 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.214 0.786 37 H 0.198 0.802 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.279 -19.711 -3.043 20.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.176 5.176 2 C -0.070 4.070 3 C -0.104 4.104 4 C -0.050 4.050 5 N -0.256 5.256 6 C 0.076 3.924 7 C -0.552 4.552 8 H 0.073 0.927 9 C -0.185 4.185 10 N -0.567 5.567 11 Si 0.770 3.230 12 H -0.199 1.199 13 H -0.213 1.213 14 H -0.201 1.201 15 C -0.008 4.008 16 C -0.179 4.179 17 C -0.036 4.036 18 N -0.162 5.162 19 H 0.282 0.718 20 C -0.078 4.078 21 C -0.031 4.031 22 N -0.202 5.202 23 C -0.042 4.042 24 Cl -0.021 7.021 25 C -0.125 4.125 26 C -0.080 4.080 27 H 0.158 0.842 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.019 0.981 32 H 0.022 0.978 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.230 0.770 37 H 0.215 0.785 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.342 -19.914 -4.279 20.640 hybrid contribution 0.078 1.669 0.937 1.916 sum -3.263 -18.245 -3.342 18.833 Atomic orbital electron populations 1.81184 1.14324 1.11262 1.10845 1.29400 0.95221 0.91138 0.91285 1.20207 0.80359 1.06913 1.02883 1.21898 0.88076 1.02406 0.92633 1.62188 1.06021 1.02032 1.55336 1.19490 0.93977 0.86927 0.92048 1.21425 1.38179 0.91293 1.04272 0.92712 1.25566 0.95567 1.01641 0.95703 1.70005 1.43413 1.25209 1.18103 0.85830 0.78610 0.79699 0.78821 1.19925 1.21268 1.20148 1.20414 0.99828 0.86131 0.94409 1.20114 0.99851 1.00738 0.97246 1.22341 0.98605 0.89354 0.93258 1.41577 1.26717 1.28606 1.19266 0.71823 1.19380 0.93729 0.98796 0.95859 1.22148 0.92084 0.99562 0.89293 1.66880 1.08240 1.11688 1.33397 1.20782 0.94317 0.95877 0.93242 1.98366 1.41780 1.86407 1.75501 1.20921 0.97369 1.00410 0.93776 1.19359 0.95849 0.96022 0.96793 0.84185 0.87821 0.92408 0.89628 0.98105 0.97803 0.92996 0.91346 0.91736 0.76966 0.78510 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -15.90 18.54 20.01 0.37 -15.53 16 2 C 0.25 6.67 15.43 89.44 1.38 8.05 16 3 C -0.06 -1.48 5.05 28.79 0.15 -1.34 16 4 C 0.08 2.32 4.94 86.30 0.43 2.75 16 5 N -0.53 -18.01 4.69 -905.33 -4.24 -22.25 16 6 C 0.20 8.85 4.52 85.56 0.39 9.24 16 7 C -0.51 -26.16 8.40 25.60 0.22 -25.95 16 8 H 0.05 2.83 7.36 -2.91 -0.02 2.81 16 9 C 0.01 0.73 5.46 84.66 0.46 1.19 16 10 N -0.93 -51.51 13.29 21.45 0.28 -51.22 16 11 Si 0.94 42.83 29.54 68.60 2.03 44.86 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 13 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 15 C 0.12 3.09 5.29 85.56 0.45 3.54 16 16 C -0.17 -3.76 4.91 -18.72 -0.09 -3.85 16 17 C 0.10 1.27 10.99 83.07 0.91 2.18 16 18 N -0.56 -6.47 6.06 -187.56 -1.14 -7.60 16 19 H 0.44 1.61 8.96 -92.71 -0.83 0.78 16 20 C 0.03 0.65 7.33 39.07 0.29 0.94 16 21 C 0.14 2.65 11.24 84.84 0.95 3.61 16 22 N -0.49 -12.94 10.29 -187.20 -1.93 -14.87 16 23 C 0.11 3.27 7.23 84.27 0.61 3.88 16 24 Cl -0.05 -1.36 29.08 -2.72 -0.08 -1.44 16 25 C -0.10 -3.02 9.86 22.31 0.22 -2.80 16 26 C -0.07 -1.75 6.42 -20.20 -0.13 -1.88 16 27 H 0.14 2.18 6.34 -2.39 -0.02 2.16 16 28 H 0.10 3.05 6.28 -2.39 -0.02 3.04 16 29 H 0.06 2.06 6.98 -2.39 -0.02 2.04 16 30 H 0.09 2.10 6.64 -2.39 -0.02 2.08 16 31 H 0.00 0.06 6.01 -2.39 -0.01 0.04 16 32 H 0.00 0.19 7.91 -2.39 -0.02 0.17 16 33 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 34 H 0.07 1.37 6.08 -2.39 -0.01 1.35 16 35 H 0.06 1.88 7.92 -2.39 -0.02 1.86 16 36 H 0.21 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.20 2.05 8.06 -2.91 -0.02 2.03 16 38 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -68.88 342.85 1.82 -67.05 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: 0.30 Total: 1.46 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 6.23 Total: -0.45 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -6.65 Total: -111.48 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -68.88 1.82 -67.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235511311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.076 kcal (2) G-P(sol) polarization free energy of solvation -68.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds