Wall clock time and date at job start Tue Mar 31 2020 12:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39393 * 120.10287 * 30.29560 * 3 2 1 5 5 C 1.39282 * 119.72366 * 180.28978 * 4 3 2 6 6 C 1.47916 * 120.03834 * 179.74619 * 5 4 3 7 7 N 1.31570 * 119.44773 * 315.97053 * 6 5 4 8 8 C 1.33656 * 121.75057 * 179.97438 * 7 6 5 9 9 C 1.40476 * 120.99598 * 179.97438 * 8 7 6 10 10 C 1.36251 * 119.70748 * 179.97438 * 9 8 7 11 11 C 1.39159 * 121.75388 * 359.97438 * 10 9 8 12 12 C 1.36123 * 121.47124 * 0.02562 * 11 10 9 13 13 C 1.40791 * 119.46530 * 359.75700 * 12 11 10 14 14 C 1.40015 * 121.40218 * 179.70229 * 13 12 11 15 15 C 1.40372 * 117.97030 * 180.24529 * 14 13 12 16 16 C 1.40839 * 120.41473 * 180.27153 * 15 14 13 17 17 H 1.08005 * 119.99973 * 151.85880 * 16 15 14 18 18 C 1.40092 * 120.00317 * 331.86405 * 16 15 14 19 19 N 1.30768 * 119.99655 * 346.42632 * 18 16 15 20 20 Si 1.86793 * 120.00335 * 166.42604 * 18 16 15 21 21 H 1.48505 * 109.46940 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47260 * 119.99536 * 20 18 16 23 23 H 1.48497 * 109.47452 * 240.00167 * 20 18 16 24 24 C 1.39787 * 119.92528 * 359.47797 * 5 4 3 25 25 C 1.37902 * 120.20333 * 0.26679 * 24 5 4 26 26 C 1.38443 * 120.27753 * 0.02562 * 25 24 5 27 27 F 1.35101 * 119.96756 * 179.97438 * 26 25 24 28 28 H 1.07995 * 120.13920 * 0.02793 * 4 3 2 29 29 H 1.07995 * 120.14647 * 0.02562 * 9 8 7 30 30 H 1.07997 * 119.12269 * 179.97438 * 10 9 8 31 31 H 1.08010 * 119.26482 * 180.02562 * 11 10 9 32 32 H 1.07992 * 120.27174 * 179.97438 * 12 11 10 33 33 H 1.08007 * 121.01454 * 0.52384 * 14 13 12 34 34 H 0.96993 * 119.99780 * 179.97438 * 19 18 16 35 35 H 1.08002 * 119.89837 * 180.25564 * 24 5 4 36 36 H 1.07998 * 119.86305 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2676 -1.0403 -0.6083 5 6 4.6603 -1.0348 -0.5984 6 6 5.4097 -2.1387 -1.2370 7 7 5.0239 -3.3811 -1.0403 8 6 5.6667 -4.4134 -1.5949 9 6 5.2413 -5.7338 -1.3738 10 6 5.9158 -6.7664 -1.9527 11 6 7.0248 -6.5526 -2.7656 12 6 7.4882 -5.2982 -3.0200 13 6 6.8309 -4.1891 -2.4542 14 6 7.2765 -2.8817 -2.6838 15 6 6.5702 -1.8298 -2.0796 16 6 6.9702 -0.4944 -2.2805 17 1 6.2414 0.3011 -2.2298 18 6 8.3134 -0.1979 -2.5463 19 7 9.2345 -1.1049 -2.3490 20 14 8.7885 1.4929 -3.1824 21 1 7.5698 2.3303 -3.3202 22 1 9.7260 2.1358 -2.2269 23 1 9.4471 1.3567 -4.5063 24 6 5.3492 0.0180 0.0108 25 6 4.6541 1.0490 0.6071 26 6 3.2696 1.0489 0.6074 27 9 2.5949 2.0619 1.1939 28 1 2.7319 -1.8498 -1.0817 29 1 4.3829 -5.9295 -0.7483 30 1 5.5808 -7.7778 -1.7760 31 1 7.5291 -7.4008 -3.2046 32 1 8.3509 -5.1546 -3.6535 33 1 8.1347 -2.6883 -3.3104 34 1 10.1644 -0.8997 -2.5333 35 1 6.4292 0.0239 0.0146 36 1 5.1919 1.8594 1.0765 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235891566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:46 Heat of formation + Delta-G solvation = 46.283256 kcal Electronic energy + Delta-G solvation = -24409.871873 eV Core-core repulsion = 20737.548755 eV Total energy + Delta-G solvation = -3672.323118 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.90247 -39.50982 -38.59944 -36.52708 -35.83714 -34.38871 -31.87008 -31.54718 -31.15420 -29.44963 -28.29728 -25.85173 -23.82557 -23.73862 -21.97597 -21.57506 -20.66336 -18.85313 -18.10708 -17.13932 -16.72369 -16.30892 -16.00332 -15.64605 -15.42439 -14.92642 -14.07666 -13.81153 -13.68790 -13.55696 -13.46512 -13.36586 -13.14984 -13.03014 -12.74584 -12.55354 -12.22835 -11.97710 -11.89287 -11.60248 -11.46061 -11.22947 -11.01329 -10.90940 -10.75023 -10.57379 -10.08158 -9.73576 -9.15645 -8.92260 -8.68819 -8.41954 -7.52751 -7.29484 -7.15231 -4.74628 0.76909 1.12285 1.61581 1.91497 2.71007 2.76128 2.86416 2.90685 3.01438 3.30722 3.59520 3.68253 3.88822 3.99233 4.21917 4.49911 4.83912 4.90362 5.23523 5.38832 5.48326 5.51574 5.57968 5.69282 5.80249 6.02511 6.04574 6.12285 6.15496 6.20696 6.31066 6.50868 6.65957 6.70054 6.77620 6.86725 6.93003 7.11017 7.22894 7.26311 7.51592 7.53570 7.57500 7.75639 8.08996 8.28130 8.34062 9.01435 9.71460 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009242 B = 0.005517 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.042326 B = 5073.621501 C = 7748.787990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.265 3.735 3 C -0.075 4.075 4 C -0.025 4.025 5 C -0.005 4.005 6 C 0.102 3.898 7 N -0.452 5.452 8 C 0.027 3.973 9 C -0.059 4.059 10 C -0.176 4.176 11 C -0.115 4.115 12 C -0.129 4.129 13 C -0.044 4.044 14 C -0.165 4.165 15 C 0.080 3.920 16 C -0.432 4.432 17 H 0.093 0.907 18 C 0.072 3.928 19 N -0.770 5.770 20 Si 0.910 3.090 21 H -0.254 1.254 22 H -0.269 1.269 23 H -0.269 1.269 24 C -0.027 4.027 25 C -0.160 4.160 26 C 0.133 3.867 27 F -0.136 7.136 28 H 0.141 0.859 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.133 0.867 34 H 0.289 0.711 35 H 0.157 0.843 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.120 1.381 1.338 1.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.050 4.050 3 C -0.079 4.079 4 C -0.046 4.046 5 C -0.007 4.007 6 C -0.052 4.052 7 N -0.158 5.158 8 C -0.096 4.096 9 C -0.077 4.077 10 C -0.196 4.196 11 C -0.134 4.134 12 C -0.148 4.148 13 C -0.046 4.046 14 C -0.190 4.190 15 C 0.075 3.925 16 C -0.460 4.460 17 H 0.111 0.889 18 C -0.149 4.149 19 N -0.393 5.393 20 Si 0.733 3.267 21 H -0.178 1.178 22 H -0.194 1.194 23 H -0.193 1.193 24 C -0.046 4.046 25 C -0.179 4.179 26 C 0.110 3.890 27 F -0.114 7.114 28 H 0.159 0.841 29 H 0.132 0.868 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.151 0.849 34 H 0.100 0.900 35 H 0.175 0.825 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.117 1.081 1.862 3.020 hybrid contribution 1.491 0.936 -0.750 1.914 sum -0.626 2.017 1.112 2.387 Atomic orbital electron populations 1.81179 1.11898 1.07838 1.08969 1.25415 0.92391 0.93647 0.93513 1.15823 0.84639 0.98792 1.08694 1.21218 0.93458 0.95165 0.94799 1.18404 0.91241 0.94101 0.96908 1.20804 0.96896 0.88986 0.98508 1.67345 1.29001 0.98899 1.20580 1.19254 0.96258 0.91862 1.02257 1.20514 0.98424 0.90759 0.98047 1.20298 0.98722 0.97912 1.02683 1.20509 0.97105 0.96511 0.99241 1.20877 1.00019 0.92226 1.01664 1.19718 0.94379 0.94447 0.96067 1.21525 1.03780 0.89417 1.04323 1.19148 0.89677 0.94557 0.89127 1.19710 0.93714 0.93192 1.39365 0.88879 1.26030 0.96257 0.99824 0.92822 1.69752 1.02751 1.35164 1.31599 0.86180 0.79947 0.81017 0.79519 1.17757 1.19430 1.19340 1.21680 1.02160 0.90304 0.90497 1.20986 0.90964 1.01680 1.04226 1.17686 0.90096 0.85066 0.96112 1.91501 1.80529 1.57807 1.81612 0.84098 0.86793 0.87588 0.87742 0.86977 0.84905 0.89984 0.82532 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.25 18.54 41.84 0.78 -6.47 16 2 C 0.27 4.18 14.96 -22.47 -0.34 3.84 16 3 C -0.08 -1.11 5.73 -106.88 -0.61 -1.72 16 4 C -0.02 -0.39 9.34 -38.76 -0.36 -0.75 16 5 C -0.01 -0.09 5.26 -104.97 -0.55 -0.65 16 6 C 0.10 2.12 6.54 -80.60 -0.53 1.60 16 7 N -0.45 -9.72 10.06 -4.83 -0.05 -9.77 16 8 C 0.03 0.59 6.75 -82.93 -0.56 0.03 16 9 C -0.06 -1.11 9.98 -39.45 -0.39 -1.50 16 10 C -0.18 -2.98 9.90 -39.95 -0.40 -3.37 16 11 C -0.12 -1.97 9.91 -40.00 -0.40 -2.36 16 12 C -0.13 -2.46 9.80 -39.38 -0.39 -2.85 16 13 C -0.04 -0.95 5.87 -104.97 -0.62 -1.57 16 14 C -0.16 -3.75 8.52 -38.11 -0.32 -4.07 16 15 C 0.08 1.77 5.66 -104.69 -0.59 1.17 16 16 C -0.43 -8.96 6.76 -37.90 -0.26 -9.22 16 17 H 0.09 1.81 6.50 -52.48 -0.34 1.47 16 18 C 0.07 1.46 5.21 -17.31 -0.09 1.37 16 19 N -0.77 -16.43 10.97 55.56 0.61 -15.82 16 20 Si 0.91 15.30 29.58 -169.99 -5.03 10.27 16 21 H -0.25 -4.24 7.11 56.52 0.40 -3.84 16 22 H -0.27 -4.48 7.11 56.52 0.40 -4.08 16 23 H -0.27 -4.60 7.11 56.52 0.40 -4.19 16 24 C -0.03 -0.41 7.83 -39.13 -0.31 -0.72 16 25 C -0.16 -2.07 10.00 -39.63 -0.40 -2.47 16 26 C 0.13 1.85 7.28 -38.84 -0.28 1.57 16 27 F -0.14 -1.92 16.80 2.25 0.04 -1.88 16 28 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 29 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.10 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 33 H 0.13 3.08 6.35 -52.48 -0.33 2.75 16 34 H 0.29 5.60 8.29 -40.82 -0.34 5.26 16 35 H 0.16 2.46 6.75 -52.49 -0.35 2.11 16 36 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 328.81 15.07 4.96 4.96 Total: -1.00 -24.17 328.81 -8.79 -32.95 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -2.70 Total: 7.45 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -7.39 Total: -21.68 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 1.34 Total: -32.06 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 15.30 SS G_CDS: -5.03 Total: 10.27 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -24.17 -8.79 -32.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235891566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.235 kcal (2) G-P(sol) polarization free energy of solvation -24.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds