Wall clock time and date at job start Tue Mar 31 2020 12:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39393 * 120.10287 * 30.29560 * 3 2 1 5 5 C 1.39282 * 119.72366 * 180.28978 * 4 3 2 6 6 C 1.47916 * 120.03834 * 179.74619 * 5 4 3 7 7 N 1.31570 * 119.44773 * 315.97053 * 6 5 4 8 8 C 1.33656 * 121.75057 * 179.97438 * 7 6 5 9 9 C 1.40476 * 120.99598 * 179.97438 * 8 7 6 10 10 C 1.36251 * 119.70748 * 179.97438 * 9 8 7 11 11 C 1.39159 * 121.75388 * 359.97438 * 10 9 8 12 12 C 1.36123 * 121.47124 * 0.02562 * 11 10 9 13 13 C 1.40791 * 119.46530 * 359.75700 * 12 11 10 14 14 C 1.40015 * 121.40218 * 179.70229 * 13 12 11 15 15 C 1.40372 * 117.97030 * 180.24529 * 14 13 12 16 16 C 1.40839 * 120.41473 * 180.27153 * 15 14 13 17 17 H 1.08005 * 119.99973 * 151.85880 * 16 15 14 18 18 C 1.40092 * 120.00317 * 331.86405 * 16 15 14 19 19 N 1.30768 * 119.99655 * 346.42632 * 18 16 15 20 20 Si 1.86793 * 120.00335 * 166.42604 * 18 16 15 21 21 H 1.48505 * 109.46940 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47260 * 119.99536 * 20 18 16 23 23 H 1.48497 * 109.47452 * 240.00167 * 20 18 16 24 24 C 1.39787 * 119.92528 * 359.47797 * 5 4 3 25 25 C 1.37902 * 120.20333 * 0.26679 * 24 5 4 26 26 C 1.38443 * 120.27753 * 0.02562 * 25 24 5 27 27 F 1.35101 * 119.96756 * 179.97438 * 26 25 24 28 28 H 1.07995 * 120.13920 * 0.02793 * 4 3 2 29 29 H 1.07995 * 120.14647 * 0.02562 * 9 8 7 30 30 H 1.07997 * 119.12269 * 179.97438 * 10 9 8 31 31 H 1.08010 * 119.26482 * 180.02562 * 11 10 9 32 32 H 1.07992 * 120.27174 * 179.97438 * 12 11 10 33 33 H 1.08007 * 121.01454 * 0.52384 * 14 13 12 34 34 H 0.96993 * 119.99780 * 179.97438 * 19 18 16 35 35 H 1.08002 * 119.89837 * 180.25564 * 24 5 4 36 36 H 1.07998 * 119.86305 * 179.97438 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2676 -1.0403 -0.6083 5 6 4.6603 -1.0348 -0.5984 6 6 5.4097 -2.1387 -1.2370 7 7 5.0239 -3.3811 -1.0403 8 6 5.6667 -4.4134 -1.5949 9 6 5.2413 -5.7338 -1.3738 10 6 5.9158 -6.7664 -1.9527 11 6 7.0248 -6.5526 -2.7656 12 6 7.4882 -5.2982 -3.0200 13 6 6.8309 -4.1891 -2.4542 14 6 7.2765 -2.8817 -2.6838 15 6 6.5702 -1.8298 -2.0796 16 6 6.9702 -0.4944 -2.2805 17 1 6.2414 0.3011 -2.2298 18 6 8.3134 -0.1979 -2.5463 19 7 9.2345 -1.1049 -2.3490 20 14 8.7885 1.4929 -3.1824 21 1 7.5698 2.3303 -3.3202 22 1 9.7260 2.1358 -2.2269 23 1 9.4471 1.3567 -4.5063 24 6 5.3492 0.0180 0.0108 25 6 4.6541 1.0490 0.6071 26 6 3.2696 1.0489 0.6074 27 9 2.5949 2.0619 1.1939 28 1 2.7319 -1.8498 -1.0817 29 1 4.3829 -5.9295 -0.7483 30 1 5.5808 -7.7778 -1.7760 31 1 7.5291 -7.4008 -3.2046 32 1 8.3509 -5.1546 -3.6535 33 1 8.1347 -2.6883 -3.3104 34 1 10.1644 -0.8997 -2.5333 35 1 6.4292 0.0239 0.0146 36 1 5.1919 1.8594 1.0765 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235891566.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:45 Heat of formation + Delta-G solvation = 38.021586 kcal Electronic energy + Delta-G solvation = -24410.230126 eV Core-core repulsion = 20737.548755 eV Total energy + Delta-G solvation = -3672.681371 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.05868 -40.93231 -39.94479 -37.89062 -37.23435 -35.93003 -33.40367 -32.86901 -32.40547 -30.95576 -29.71150 -27.38921 -25.12227 -25.07608 -23.49831 -22.89224 -22.18144 -20.19047 -19.55524 -18.37686 -18.12353 -17.77926 -17.27649 -16.88348 -16.80376 -16.34441 -15.36804 -15.09989 -15.05602 -14.88050 -14.83138 -14.74902 -14.55481 -14.36245 -14.17074 -13.85498 -13.70904 -13.43849 -13.21210 -12.97309 -12.87231 -12.67273 -12.26861 -12.25635 -12.15276 -11.96647 -11.56774 -11.24870 -10.70834 -10.16120 -10.10836 -9.83891 -9.06282 -8.79849 -8.66557 -6.34360 -0.50386 -0.19307 0.21847 0.44903 1.40314 1.43782 1.48106 1.61011 1.65803 1.83972 2.18381 2.26120 2.63678 2.70992 2.98113 3.02620 3.45047 3.71436 3.77283 4.03287 4.08856 4.20380 4.29321 4.40072 4.49595 4.65301 4.68441 4.69956 4.83041 4.89205 5.03223 5.10094 5.17681 5.28036 5.39490 5.50985 5.60662 5.68554 5.76468 5.81222 5.94111 6.00855 6.26319 6.27529 6.51396 6.71379 6.75811 7.42237 8.22148 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009242 B = 0.005517 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3029.042326 B = 5073.621501 C = 7748.787990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.279 3.721 3 C -0.073 4.073 4 C -0.019 4.019 5 C -0.027 4.027 6 C 0.099 3.901 7 N -0.465 5.465 8 C -0.003 4.003 9 C -0.074 4.074 10 C -0.165 4.165 11 C -0.104 4.104 12 C -0.152 4.152 13 C -0.064 4.064 14 C -0.198 4.198 15 C 0.056 3.944 16 C -0.441 4.441 17 H 0.103 0.897 18 C 0.041 3.959 19 N -0.802 5.802 20 Si 0.975 3.025 21 H -0.248 1.248 22 H -0.262 1.262 23 H -0.274 1.274 24 C -0.024 4.024 25 C -0.138 4.138 26 C 0.145 3.855 27 F -0.132 7.132 28 H 0.137 0.863 29 H 0.129 0.871 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.294 0.706 35 H 0.151 0.849 36 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.065 1.884 1.914 2.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.036 4.036 3 C -0.077 4.077 4 C -0.041 4.041 5 C -0.028 4.028 6 C -0.056 4.056 7 N -0.172 5.172 8 C -0.125 4.125 9 C -0.093 4.093 10 C -0.185 4.185 11 C -0.121 4.121 12 C -0.171 4.171 13 C -0.067 4.067 14 C -0.223 4.223 15 C 0.051 3.949 16 C -0.469 4.469 17 H 0.121 0.879 18 C -0.178 4.178 19 N -0.426 5.426 20 Si 0.795 3.205 21 H -0.170 1.170 22 H -0.187 1.187 23 H -0.199 1.199 24 C -0.044 4.044 25 C -0.157 4.157 26 C 0.123 3.877 27 F -0.110 7.110 28 H 0.155 0.845 29 H 0.146 0.854 30 H 0.163 0.837 31 H 0.161 0.839 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.105 0.895 35 H 0.169 0.831 36 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.311 1.560 2.444 3.708 hybrid contribution 1.517 0.679 -0.890 1.885 sum -0.794 2.238 1.554 2.839 Atomic orbital electron populations 1.81194 1.12588 1.08648 1.09862 1.25464 0.92397 0.92922 0.92788 1.15727 0.84070 0.98955 1.08993 1.21058 0.92823 0.95391 0.94825 1.18353 0.91721 0.94197 0.98572 1.21233 0.96646 0.89741 0.98000 1.67416 1.29379 0.99303 1.21094 1.19749 0.96704 0.93184 1.02889 1.20790 0.99422 0.90129 0.98956 1.20770 0.97679 0.99229 1.00830 1.20957 0.96587 0.96708 0.97892 1.21075 1.00762 0.92656 1.02607 1.20008 0.95008 0.94991 0.96658 1.21467 1.04449 0.90563 1.05867 1.19474 0.90500 0.95202 0.89687 1.19901 0.94356 0.92917 1.39680 0.87917 1.26771 0.95865 1.02858 0.92325 1.69822 1.03287 1.37039 1.32435 0.85221 0.79712 0.77009 0.78525 1.17042 1.18686 1.19927 1.21635 1.01939 0.90281 0.90501 1.21207 0.90431 1.01418 1.02618 1.17711 0.90367 0.84508 0.95153 1.91523 1.80536 1.57537 1.81408 0.84509 0.85361 0.83688 0.83916 0.86289 0.86532 0.89507 0.83126 0.80201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -14.90 18.54 19.00 0.35 -14.54 16 2 C 0.28 8.46 14.96 88.33 1.32 9.78 16 3 C -0.07 -2.06 5.73 -21.33 -0.12 -2.18 16 4 C -0.02 -0.60 9.34 22.80 0.21 -0.39 16 5 C -0.03 -0.95 5.26 -20.09 -0.11 -1.05 16 6 C 0.10 4.26 6.54 43.96 0.29 4.55 16 7 N -0.47 -20.67 10.06 -169.18 -1.70 -22.37 16 8 C 0.00 -0.13 6.75 41.54 0.28 0.15 16 9 C -0.07 -2.76 9.98 22.35 0.22 -2.54 16 10 C -0.17 -5.20 9.90 22.03 0.22 -4.99 16 11 C -0.10 -3.32 9.91 22.00 0.22 -3.11 16 12 C -0.15 -5.88 9.80 22.40 0.22 -5.66 16 13 C -0.06 -2.93 5.87 -20.09 -0.12 -3.05 16 14 C -0.20 -9.54 8.52 23.22 0.20 -9.34 16 15 C 0.06 2.60 5.66 -19.91 -0.11 2.49 16 16 C -0.44 -18.72 6.76 23.36 0.16 -18.56 16 17 H 0.10 4.01 6.50 -2.91 -0.02 3.99 16 18 C 0.04 1.66 5.21 85.30 0.44 2.10 16 19 N -0.80 -35.45 10.97 21.85 0.24 -35.21 16 20 Si 0.97 31.01 29.58 68.60 2.03 33.04 16 21 H -0.25 -7.53 7.11 99.48 0.71 -6.83 16 22 H -0.26 -8.00 7.11 99.48 0.71 -7.29 16 23 H -0.27 -8.90 7.11 99.48 0.71 -8.19 16 24 C -0.02 -0.70 7.83 22.57 0.18 -0.53 16 25 C -0.14 -3.19 10.00 22.24 0.22 -2.97 16 26 C 0.14 3.66 7.28 22.75 0.17 3.83 16 27 F -0.13 -3.32 16.80 44.97 0.76 -2.56 16 28 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 29 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 30 H 0.15 3.44 8.06 -2.91 -0.02 3.41 16 31 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 32 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 33 H 0.12 5.81 6.35 -2.91 -0.02 5.80 16 34 H 0.29 11.74 8.29 -92.71 -0.77 10.97 16 35 H 0.15 4.68 6.75 -2.91 -0.02 4.66 16 36 H 0.18 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -54.18 328.81 6.72 -47.46 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 1.15 Total: 25.63 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 3.89 Total: -31.45 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -1.11 Total: -72.12 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.76 Total: -2.56 kcal Atomic # 14 Polarization: 31.01 SS G_CDS: 2.03 Total: 33.04 kcal Total: -54.18 6.72 -47.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235891566.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.485 kcal (2) G-P(sol) polarization free energy of solvation -54.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds