Wall clock time and date at job start Tue Mar 31 2020 11:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47209 * 2 1 4 4 O 1.42900 * 109.47314 * 119.99911 * 2 1 3 5 5 C 1.35748 * 117.00266 * 84.09928 * 4 2 1 6 6 C 1.38591 * 120.13407 * 2.82966 * 5 4 2 7 7 C 1.38151 * 120.10748 * 179.97438 * 6 5 4 8 8 C 1.38662 * 120.37785 * 0.02562 * 7 6 5 9 9 Cl 1.73599 * 119.86303 * 180.02562 * 8 7 6 10 10 C 1.37904 * 120.27358 * 359.74286 * 8 7 6 11 11 C 1.39743 * 119.88718 * 0.49290 * 10 8 7 12 12 C 1.47598 * 120.19114 * 179.79171 * 11 10 8 13 13 N 1.33032 * 120.55313 * 129.59118 * 12 11 10 14 14 C 1.31905 * 120.03410 * 180.25895 * 13 12 11 15 15 C 1.39033 * 121.22032 * 359.75775 * 14 13 12 16 16 N 1.31516 * 121.13828 * 359.97438 * 15 14 13 17 17 C 1.34088 * 119.86389 * 359.97438 * 16 15 14 18 18 C 1.40734 * 120.57538 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99234 * 172.44465 * 18 17 16 20 20 C 1.40149 * 120.00430 * 352.44069 * 18 17 16 21 21 N 1.30695 * 120.00175 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00173 * 180.27685 * 20 18 17 23 23 H 1.48502 * 109.47457 * 179.72223 * 22 20 18 24 24 H 1.48505 * 109.47300 * 299.72608 * 22 20 18 25 25 H 1.48507 * 109.47421 * 59.72472 * 22 20 18 26 26 H 1.08998 * 109.47190 * 60.00416 * 1 2 3 27 27 H 1.08998 * 109.46903 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47006 * 300.00148 * 1 2 3 29 29 H 1.09003 * 109.47006 * 239.99852 * 2 1 3 30 30 H 1.09004 * 109.47454 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47216 * 299.99583 * 3 2 1 32 32 H 1.08989 * 109.47501 * 60.00012 * 3 2 1 33 33 H 1.07999 * 119.94476 * 359.97438 * 6 5 4 34 34 H 1.07993 * 119.80751 * 180.02562 * 7 6 5 35 35 H 1.07996 * 120.06070 * 180.25622 * 10 8 7 36 36 H 1.07996 * 119.39301 * 179.74732 * 14 13 12 37 37 H 1.07994 * 119.42825 * 180.02562 * 15 14 13 38 38 H 0.96998 * 120.00351 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0946 -2.0268 1.1044 6 6 1.7870 -2.6905 -0.0727 7 6 1.8775 -4.0676 -0.1358 8 6 2.2752 -4.7958 0.9752 9 17 2.3850 -6.5258 0.8809 10 6 2.5896 -4.1510 2.1530 11 6 2.4971 -2.7588 2.2308 12 6 2.8275 -2.0622 3.4894 13 7 3.6688 -1.0317 3.4912 14 6 3.9608 -0.4198 4.6227 15 6 3.4001 -0.8274 5.8279 16 7 2.5589 -1.8370 5.8797 17 6 2.2301 -2.4904 4.7559 18 6 1.3319 -3.5732 4.7941 19 1 0.9788 -4.0145 3.8737 20 6 0.8958 -4.0788 6.0263 21 7 1.3235 -3.5452 7.1400 22 14 -0.2903 -5.5210 6.0770 23 1 -0.5892 -5.8668 7.4899 24 1 -1.5490 -5.1516 5.3809 25 1 0.3243 -6.6915 5.4004 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.4761 -2.1303 -0.9421 34 1 1.6371 -4.5799 -1.0556 35 1 2.9029 -4.7213 3.0150 36 1 4.6482 0.4131 4.6128 37 1 3.6592 -0.3053 6.7371 38 1 1.0220 -3.8954 7.9928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235940129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:44 Heat of formation + Delta-G solvation = 13.252072 kcal Electronic energy + Delta-G solvation = -24253.621721 eV Core-core repulsion = 20700.893718 eV Total energy + Delta-G solvation = -3552.728003 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.97384 -38.55006 -37.40513 -35.82885 -34.17086 -33.05844 -32.31266 -31.36456 -29.43413 -28.53862 -27.18086 -26.13873 -23.49603 -23.04319 -21.83007 -20.81476 -20.40345 -17.90865 -17.66747 -16.24703 -16.16364 -15.53988 -15.15649 -14.88226 -14.56993 -14.26501 -14.05239 -13.82995 -13.16986 -12.90270 -12.74001 -12.63978 -12.35157 -12.24759 -12.12794 -11.96807 -11.59665 -11.51751 -11.39067 -11.18195 -11.14389 -10.77870 -10.66057 -10.42393 -10.27088 -10.08336 -9.87049 -9.54943 -9.20382 -8.55001 -7.87303 -7.51134 -7.27306 -6.59759 -4.75641 1.54863 1.73346 2.46577 2.58848 2.96587 2.97018 3.00176 3.22736 3.57471 3.76894 4.11909 4.57022 4.84813 4.99471 5.05874 5.11051 5.26142 5.50498 5.52918 5.56834 5.67188 5.76832 5.80293 5.85505 5.94580 6.06501 6.18581 6.21912 6.24721 6.26337 6.43122 6.52615 6.61481 6.74600 6.83831 6.96081 7.00042 7.25048 7.64452 7.91152 7.95590 8.30345 8.58482 9.24827 9.79919 9.99249 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009174 B = 0.006573 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.320331 B = 4258.643601 C = 6080.572203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.072 3.928 3 C -0.145 4.145 4 O -0.280 6.280 5 C 0.146 3.854 6 C -0.209 4.209 7 C -0.089 4.089 8 C -0.072 4.072 9 Cl -0.088 7.088 10 C -0.057 4.057 11 C 0.012 3.988 12 C -0.027 4.027 13 N -0.393 5.393 14 C -0.126 4.126 15 C 0.092 3.908 16 N -0.461 5.461 17 C 0.226 3.774 18 C -0.395 4.395 19 H 0.096 0.904 20 C 0.066 3.934 21 N -0.701 5.701 22 Si 0.908 3.092 23 H -0.274 1.274 24 H -0.260 1.260 25 H -0.257 1.257 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.144 0.856 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.848 1.066 -11.070 11.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.015 3.985 3 C -0.202 4.202 4 O -0.192 6.192 5 C 0.098 3.902 6 C -0.228 4.228 7 C -0.108 4.108 8 C -0.099 4.099 9 Cl -0.060 7.060 10 C -0.077 4.077 11 C 0.010 3.990 12 C -0.176 4.176 13 N -0.105 5.105 14 C -0.286 4.286 15 C -0.078 4.078 16 N -0.177 5.177 17 C 0.100 3.900 18 C -0.425 4.425 19 H 0.114 0.886 20 C -0.163 4.163 21 N -0.320 5.320 22 Si 0.730 3.270 23 H -0.198 1.198 24 H -0.184 1.184 25 H -0.181 1.181 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.162 0.838 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.793 1.080 -10.595 10.799 hybrid contribution -0.576 -0.673 -0.040 0.887 sum -2.369 0.406 -10.635 10.903 Atomic orbital electron populations 1.22357 0.95476 1.03027 1.02718 1.22404 0.94037 0.93867 0.88171 1.21788 1.02229 0.93697 1.02474 1.86333 1.79748 1.15717 1.37419 1.19197 0.94844 0.82983 0.93135 1.20972 1.09589 0.94576 0.97672 1.20614 1.00046 0.92992 0.97153 1.20538 1.09427 0.83702 0.96225 1.98320 1.97209 1.11877 1.98565 1.21061 0.97273 0.92960 0.96416 1.17548 1.00176 0.90648 0.90661 1.20855 1.05010 0.99888 0.91853 1.67737 1.09690 1.04019 1.29018 1.22361 1.10189 1.06135 0.89959 1.23386 0.93221 0.94125 0.97058 1.69555 1.13919 1.06671 1.27582 1.20332 0.91249 0.92076 0.86321 1.19699 1.18939 1.09873 0.93995 0.88639 1.26205 0.96569 0.98258 0.95225 1.70040 1.30685 1.32694 0.98609 0.86338 0.80893 0.81100 0.78633 1.19824 1.18427 1.18100 0.91511 0.91872 0.91460 0.91281 0.91591 0.91133 0.91531 0.85139 0.85644 0.83848 0.85842 0.85572 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 9.28 37.16 0.34 -1.84 16 2 C 0.07 0.99 2.86 -26.73 -0.08 0.91 16 3 C -0.14 -1.73 9.56 37.16 0.36 -1.38 16 4 O -0.28 -5.33 8.84 -18.95 -0.17 -5.50 16 5 C 0.15 2.81 6.56 -38.70 -0.25 2.56 16 6 C -0.21 -3.29 8.38 -39.48 -0.33 -3.62 16 7 C -0.09 -1.36 9.81 -39.46 -0.39 -1.74 16 8 C -0.07 -1.24 6.31 -39.55 -0.25 -1.49 16 9 Cl -0.09 -1.37 28.94 -51.86 -1.50 -2.87 16 10 C -0.06 -1.14 7.52 -39.14 -0.29 -1.44 16 11 C 0.01 0.26 5.18 -104.76 -0.54 -0.28 16 12 C -0.03 -0.67 6.18 -80.23 -0.50 -1.17 16 13 N -0.39 -9.76 9.90 -7.86 -0.08 -9.83 16 14 C -0.13 -2.94 11.17 -17.23 -0.19 -3.13 16 15 C 0.09 2.20 11.17 -17.39 -0.19 2.00 16 16 N -0.46 -12.39 8.12 -9.56 -0.08 -12.47 16 17 C 0.23 6.01 6.67 -82.64 -0.55 5.46 16 18 C -0.40 -9.98 7.93 -37.92 -0.30 -10.29 16 19 H 0.10 2.28 5.82 -52.48 -0.31 1.98 16 20 C 0.07 1.58 5.50 -17.32 -0.10 1.48 16 21 N -0.70 -17.64 11.53 55.56 0.64 -17.00 16 22 Si 0.91 17.75 29.56 -169.99 -5.02 12.72 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 24 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 25 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.81 7.41 -51.93 -0.38 0.43 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.84 5.96 -51.93 -0.31 0.53 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.13 1.66 5.69 -52.49 -0.30 1.36 16 34 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 35 H 0.14 2.97 7.42 -52.49 -0.39 2.58 16 36 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 37 H 0.13 2.59 8.06 -52.49 -0.42 2.16 16 38 H 0.28 6.37 8.29 -40.82 -0.34 6.03 16 LS Contribution 337.78 15.07 5.09 5.09 Total: -1.00 -29.22 337.78 -8.59 -37.80 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -4.20 Total: 6.02 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -3.26 Total: -13.97 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.49 Total: -39.30 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.17 Total: -5.50 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.02 Total: 12.72 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -1.50 Total: -2.87 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.22 -8.59 -37.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235940129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.056 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds