Wall clock time and date at job start Tue Mar 31 2020 11:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47209 * 2 1 4 4 O 1.42900 * 109.47314 * 119.99911 * 2 1 3 5 5 C 1.35748 * 117.00266 * 84.09928 * 4 2 1 6 6 C 1.38591 * 120.13407 * 2.82966 * 5 4 2 7 7 C 1.38151 * 120.10748 * 179.97438 * 6 5 4 8 8 C 1.38662 * 120.37785 * 0.02562 * 7 6 5 9 9 Cl 1.73599 * 119.86303 * 180.02562 * 8 7 6 10 10 C 1.37904 * 120.27358 * 359.74286 * 8 7 6 11 11 C 1.39743 * 119.88718 * 0.49290 * 10 8 7 12 12 C 1.47598 * 120.19114 * 179.79171 * 11 10 8 13 13 N 1.33032 * 120.55313 * 129.59118 * 12 11 10 14 14 C 1.31905 * 120.03410 * 180.25895 * 13 12 11 15 15 C 1.39033 * 121.22032 * 359.75775 * 14 13 12 16 16 N 1.31516 * 121.13828 * 359.97438 * 15 14 13 17 17 C 1.34088 * 119.86389 * 359.97438 * 16 15 14 18 18 C 1.40734 * 120.57538 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99234 * 172.44465 * 18 17 16 20 20 C 1.40149 * 120.00430 * 352.44069 * 18 17 16 21 21 N 1.30695 * 120.00175 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00173 * 180.27685 * 20 18 17 23 23 H 1.48502 * 109.47457 * 179.72223 * 22 20 18 24 24 H 1.48505 * 109.47300 * 299.72608 * 22 20 18 25 25 H 1.48507 * 109.47421 * 59.72472 * 22 20 18 26 26 H 1.08998 * 109.47190 * 60.00416 * 1 2 3 27 27 H 1.08998 * 109.46903 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47006 * 300.00148 * 1 2 3 29 29 H 1.09003 * 109.47006 * 239.99852 * 2 1 3 30 30 H 1.09004 * 109.47454 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47216 * 299.99583 * 3 2 1 32 32 H 1.08989 * 109.47501 * 60.00012 * 3 2 1 33 33 H 1.07999 * 119.94476 * 359.97438 * 6 5 4 34 34 H 1.07993 * 119.80751 * 180.02562 * 7 6 5 35 35 H 1.07996 * 120.06070 * 180.25622 * 10 8 7 36 36 H 1.07996 * 119.39301 * 179.74732 * 14 13 12 37 37 H 1.07994 * 119.42825 * 180.02562 * 15 14 13 38 38 H 0.96998 * 120.00351 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0946 -2.0268 1.1044 6 6 1.7870 -2.6905 -0.0727 7 6 1.8775 -4.0676 -0.1358 8 6 2.2752 -4.7958 0.9752 9 17 2.3850 -6.5258 0.8809 10 6 2.5896 -4.1510 2.1530 11 6 2.4971 -2.7588 2.2308 12 6 2.8275 -2.0622 3.4894 13 7 3.6688 -1.0317 3.4912 14 6 3.9608 -0.4198 4.6227 15 6 3.4001 -0.8274 5.8279 16 7 2.5589 -1.8370 5.8797 17 6 2.2301 -2.4904 4.7559 18 6 1.3319 -3.5732 4.7941 19 1 0.9788 -4.0145 3.8737 20 6 0.8958 -4.0788 6.0263 21 7 1.3235 -3.5452 7.1400 22 14 -0.2903 -5.5210 6.0770 23 1 -0.5892 -5.8668 7.4899 24 1 -1.5490 -5.1516 5.3809 25 1 0.3243 -6.6915 5.4004 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.4761 -2.1303 -0.9421 34 1 1.6371 -4.5799 -1.0556 35 1 2.9029 -4.7213 3.0150 36 1 4.6482 0.4131 4.6128 37 1 3.6592 -0.3053 6.7371 38 1 1.0220 -3.8954 7.9928 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235940129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:44 Heat of formation + Delta-G solvation = -2.831473 kcal Electronic energy + Delta-G solvation = -24254.319156 eV Core-core repulsion = 20700.893718 eV Total energy + Delta-G solvation = -3553.425437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.37128 -40.29990 -38.74227 -37.12550 -36.00026 -34.40653 -33.83599 -33.05163 -30.91451 -30.10201 -28.17295 -27.93581 -25.10631 -24.41314 -23.61163 -22.35571 -21.63254 -19.54632 -19.19798 -17.92172 -17.66181 -17.00387 -16.63913 -16.35370 -16.10744 -15.75877 -15.46605 -15.13928 -14.57002 -14.44783 -14.36812 -13.98130 -13.66356 -13.44324 -13.36640 -13.23967 -13.04371 -13.00264 -12.90349 -12.63328 -12.32069 -12.22967 -12.04071 -11.86050 -11.68550 -11.50911 -11.46171 -11.29120 -11.02223 -10.10933 -9.51941 -9.29951 -8.84722 -8.40783 -6.64098 0.07224 0.34833 0.71907 1.19043 1.29448 1.36171 1.48636 1.53962 2.14046 2.37313 2.67629 2.77039 3.65073 3.73197 3.85047 3.89618 4.01003 4.11249 4.19203 4.21092 4.24759 4.43707 4.57414 4.63903 4.69568 4.80829 4.83165 4.86242 4.88349 5.04061 5.07243 5.12746 5.20224 5.24776 5.29637 5.38095 5.39838 5.74599 5.83367 6.09068 6.44222 6.63561 6.72637 7.38106 7.92348 8.22614 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009174 B = 0.006573 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3051.320331 B = 4258.643601 C = 6080.572203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.060 3.940 3 C -0.142 4.142 4 O -0.313 6.313 5 C 0.139 3.861 6 C -0.196 4.196 7 C -0.068 4.068 8 C -0.078 4.078 9 Cl -0.072 7.072 10 C -0.065 4.065 11 C -0.034 4.034 12 C -0.028 4.028 13 N -0.412 5.412 14 C -0.133 4.133 15 C 0.077 3.923 16 N -0.496 5.496 17 C 0.192 3.808 18 C -0.415 4.415 19 H 0.100 0.900 20 C 0.025 3.975 21 N -0.738 5.738 22 Si 0.978 3.022 23 H -0.262 1.262 24 H -0.256 1.256 25 H -0.251 1.251 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.046 0.954 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.048 0.952 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.122 0.878 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.057 0.372 -14.069 14.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.004 3.996 3 C -0.199 4.199 4 O -0.227 6.227 5 C 0.092 3.908 6 C -0.215 4.215 7 C -0.087 4.087 8 C -0.105 4.105 9 Cl -0.043 7.043 10 C -0.085 4.085 11 C -0.036 4.036 12 C -0.177 4.177 13 N -0.123 5.123 14 C -0.292 4.292 15 C -0.092 4.092 16 N -0.213 5.213 17 C 0.066 3.934 18 C -0.445 4.445 19 H 0.118 0.882 20 C -0.200 4.200 21 N -0.359 5.359 22 Si 0.796 3.204 23 H -0.186 1.186 24 H -0.180 1.180 25 H -0.175 1.175 26 H 0.121 0.879 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.126 0.874 32 H 0.067 0.933 33 H 0.186 0.814 34 H 0.184 0.816 35 H 0.140 0.860 36 H 0.170 0.830 37 H 0.171 0.829 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.976 0.420 -13.597 13.925 hybrid contribution -0.143 -0.392 0.757 0.864 sum -3.119 0.027 -12.840 13.214 Atomic orbital electron populations 1.22337 0.94318 1.02899 1.03498 1.22836 0.95024 0.94362 0.87349 1.21827 1.01643 0.92956 1.03439 1.86303 1.80127 1.15828 1.40422 1.19318 0.94662 0.83405 0.93410 1.21338 1.07855 0.94910 0.97376 1.21085 0.97149 0.92836 0.97651 1.20616 1.09291 0.84721 0.95882 1.98323 1.97146 1.10398 1.98479 1.20881 0.98196 0.92405 0.97011 1.17632 1.03613 0.91572 0.90771 1.21323 1.03935 0.99545 0.92939 1.67823 1.10256 1.04695 1.29567 1.22841 1.10180 1.06584 0.89620 1.23832 0.92973 0.93866 0.98485 1.69498 1.15423 1.07951 1.28428 1.20814 0.92304 0.93064 0.87188 1.19950 1.19419 1.10168 0.94930 0.88216 1.27098 0.97882 1.00661 0.94318 1.70115 1.32023 1.34351 0.99363 0.85301 0.78392 0.77453 0.79210 1.18570 1.17962 1.17454 0.87905 0.92417 0.93482 0.88954 0.92535 0.87390 0.93278 0.81364 0.81589 0.86027 0.83010 0.82896 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.83 9.28 71.98 0.67 -3.17 16 2 C 0.06 1.51 2.86 30.59 0.09 1.60 16 3 C -0.14 -3.14 9.56 71.98 0.69 -2.46 16 4 O -0.31 -11.88 8.84 -90.73 -0.80 -12.68 16 5 C 0.14 5.29 6.56 22.84 0.15 5.44 16 6 C -0.20 -5.55 8.38 22.33 0.19 -5.36 16 7 C -0.07 -1.85 9.81 22.35 0.22 -1.63 16 8 C -0.08 -2.57 6.31 22.29 0.14 -2.43 16 9 Cl -0.07 -2.09 28.94 -2.72 -0.08 -2.17 16 10 C -0.06 -2.64 7.52 22.55 0.17 -2.47 16 11 C -0.03 -1.50 5.18 -19.96 -0.10 -1.60 16 12 C -0.03 -1.45 6.18 43.57 0.27 -1.18 16 13 N -0.41 -21.17 9.90 -178.79 -1.77 -22.94 16 14 C -0.13 -6.38 11.17 84.87 0.95 -5.43 16 15 C 0.08 3.80 11.17 84.93 0.95 4.74 16 16 N -0.50 -27.94 8.12 -184.15 -1.49 -29.44 16 17 C 0.19 10.75 6.67 41.54 0.28 11.03 16 18 C -0.41 -21.85 7.93 23.34 0.19 -21.67 16 19 H 0.10 4.97 5.82 -2.91 -0.02 4.96 16 20 C 0.03 1.24 5.50 85.33 0.47 1.71 16 21 N -0.74 -38.46 11.53 21.86 0.25 -38.21 16 22 Si 0.98 36.65 29.56 68.60 2.03 38.68 16 23 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 24 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 25 H -0.25 -9.06 7.11 99.48 0.71 -8.35 16 26 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.06 1.33 7.41 -2.39 -0.02 1.31 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.88 5.96 -2.39 -0.01 1.87 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.11 1.55 8.14 -2.38 -0.02 1.54 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.17 3.42 5.69 -2.91 -0.02 3.40 16 34 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 35 H 0.12 5.33 7.42 -2.91 -0.02 5.31 16 36 H 0.15 6.16 8.06 -2.91 -0.02 6.14 16 37 H 0.15 6.43 8.06 -2.91 -0.02 6.40 16 38 H 0.29 13.44 8.29 -92.71 -0.77 12.67 16 Total: -1.00 -67.65 337.78 4.54 -63.12 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 1.10 Total: 26.52 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 5.30 Total: -22.87 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -3.01 Total: -90.59 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -0.80 Total: -12.68 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 2.03 Total: 38.68 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -0.08 Total: -2.17 kcal Total: -67.65 4.54 -63.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235940129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.284 kcal (2) G-P(sol) polarization free energy of solvation -67.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds