Wall clock time and date at job start Tue Mar 31 2020 11:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47190 * 2 1 4 4 O 1.42910 * 109.47131 * 119.99708 * 2 1 3 5 5 C 1.35773 * 116.99506 * 155.08446 * 4 2 1 6 6 C 1.38557 * 120.14008 * 5.53650 * 5 4 2 7 7 C 1.38173 * 120.10764 * 180.02562 * 6 5 4 8 8 C 1.38663 * 120.36408 * 359.97421 * 7 6 5 9 9 Cl 1.73599 * 119.86984 * 180.02562 * 8 7 6 10 10 C 1.37934 * 120.26279 * 359.79095 * 8 7 6 11 11 C 1.39671 * 119.88798 * 0.46227 * 10 8 7 12 12 C 1.47772 * 120.17992 * 179.79089 * 11 10 8 13 13 C 1.40516 * 120.79883 * 309.72557 * 12 11 10 14 14 N 1.31560 * 119.08769 * 179.97438 * 13 12 11 15 15 C 1.33665 * 120.83605 * 0.02562 * 14 13 12 16 16 C 1.41009 * 119.12731 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99623 * 359.97438 * 16 15 14 18 18 C 1.40122 * 120.00394 * 180.02562 * 16 15 14 19 19 N 1.30675 * 119.99899 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00156 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46896 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47322 * 119.99612 * 20 18 16 23 23 H 1.48502 * 109.47086 * 239.99777 * 20 18 16 24 24 N 1.33684 * 121.75167 * 359.97438 * 15 14 13 25 25 C 1.31552 * 120.83427 * 0.02567 * 24 15 14 26 26 H 1.08998 * 109.47006 * 300.00315 * 1 2 3 27 27 H 1.09003 * 109.47092 * 60.00095 * 1 2 3 28 28 H 1.09004 * 109.46845 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47517 * 239.99649 * 2 1 3 30 30 H 1.09003 * 109.47026 * 299.99946 * 3 2 1 31 31 H 1.09007 * 109.47147 * 59.99937 * 3 2 1 32 32 H 1.09003 * 109.47396 * 179.97438 * 3 2 1 33 33 H 1.08004 * 119.94230 * 0.03828 * 6 5 4 34 34 H 1.07998 * 119.82109 * 179.97438 * 7 6 5 35 35 H 1.07997 * 120.05624 * 180.23442 * 10 8 7 36 36 H 1.08008 * 120.45548 * 0.24995 * 13 12 11 37 37 H 0.96996 * 119.99813 * 180.02562 * 19 18 16 38 38 H 1.07998 * 120.45684 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 3.2463 -1.2227 1.0985 6 6 4.0362 -1.0199 -0.0216 7 6 5.2977 -1.5794 -0.0907 8 6 5.7827 -2.3461 0.9579 9 17 7.3698 -3.0424 0.8579 10 6 5.0112 -2.5538 2.0823 11 6 3.7324 -1.9977 2.1612 12 6 2.8984 -2.2199 3.3607 13 6 2.7001 -3.5146 3.8694 14 7 1.9517 -3.6737 4.9396 15 6 1.3836 -2.6236 5.5406 16 6 0.5879 -2.8356 6.6853 17 1 0.4438 -3.8363 7.0649 18 6 -0.0168 -1.7480 7.3295 19 7 0.1572 -0.5372 6.8698 20 14 -1.0703 -2.0288 8.8462 21 1 -1.1083 -3.4796 9.1608 22 1 -0.4912 -1.2877 9.9954 23 1 -2.4495 -1.5425 8.5879 24 7 1.5498 -1.3777 5.0854 25 6 2.2847 -1.1414 4.0202 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1301 1.4425 0.0005 33 1 3.6653 -0.4233 -0.8420 34 1 5.9093 -1.4186 -0.9661 35 1 5.3938 -3.1484 2.8986 36 1 3.1595 -4.3671 3.3909 37 1 -0.2610 0.2157 7.3160 38 1 2.4152 -0.1324 3.6580 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235941168.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:00 Heat of formation + Delta-G solvation = 15.994972 kcal Electronic energy + Delta-G solvation = -23641.762370 eV Core-core repulsion = 20089.153309 eV Total energy + Delta-G solvation = -3552.609061 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.18275 -38.73796 -37.61644 -36.05643 -33.99886 -33.15276 -31.99324 -31.76470 -29.74954 -28.76293 -27.27190 -26.09248 -23.56509 -22.68826 -22.36653 -20.92080 -20.58595 -18.05216 -17.89874 -16.28170 -16.22949 -15.67263 -15.29514 -15.02383 -14.63134 -14.43795 -13.98677 -13.67651 -13.36220 -12.96391 -12.84726 -12.77193 -12.50239 -12.33716 -12.14218 -12.10627 -11.96958 -11.39670 -11.34179 -11.29703 -11.22017 -10.87727 -10.78863 -10.58447 -10.36888 -10.30124 -9.61370 -9.17446 -9.15333 -8.92440 -8.11644 -7.55454 -7.23702 -6.60808 -4.78139 1.37626 1.48925 2.34079 2.57254 2.98657 3.01123 3.05808 3.07308 3.40133 3.81484 3.90825 4.57689 4.74601 4.86838 4.94143 4.99959 5.09209 5.35477 5.48759 5.52666 5.60511 5.69512 5.76327 5.77285 5.84220 5.90103 5.96338 6.10872 6.13634 6.18920 6.27356 6.34660 6.47007 6.49589 6.83576 6.91789 7.01358 7.30335 7.57881 7.74544 8.08967 8.42543 8.50068 9.06451 10.02830 10.22612 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013150 B = 0.004000 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.743184 B = 6997.933077 C = 8698.588814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.075 3.925 3 C -0.180 4.180 4 O -0.289 6.289 5 C 0.129 3.871 6 C -0.198 4.198 7 C -0.098 4.098 8 C -0.064 4.064 9 Cl -0.088 7.088 10 C -0.085 4.085 11 C 0.010 3.990 12 C -0.324 4.324 13 C 0.187 3.813 14 N -0.594 5.594 15 C 0.384 3.616 16 C -0.385 4.385 17 H 0.095 0.905 18 C 0.063 3.937 19 N -0.699 5.699 20 Si 0.919 3.081 21 H -0.257 1.257 22 H -0.270 1.270 23 H -0.271 1.271 24 N -0.509 5.509 25 C 0.199 3.801 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.135 0.865 36 H 0.128 0.872 37 H 0.277 0.723 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.440 3.251 -12.862 13.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.019 3.981 3 C -0.237 4.237 4 O -0.202 6.202 5 C 0.083 3.917 6 C -0.217 4.217 7 C -0.117 4.117 8 C -0.090 4.090 9 Cl -0.059 7.059 10 C -0.104 4.104 11 C 0.008 3.992 12 C -0.334 4.334 13 C 0.012 3.988 14 N -0.313 5.313 15 C 0.151 3.849 16 C -0.418 4.418 17 H 0.113 0.887 18 C -0.165 4.165 19 N -0.320 5.320 20 Si 0.742 3.258 21 H -0.180 1.180 22 H -0.196 1.196 23 H -0.196 1.196 24 N -0.225 5.225 25 C 0.022 3.978 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.149 0.851 34 H 0.144 0.856 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.088 0.912 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.686 3.267 -11.690 12.685 hybrid contribution 0.455 0.196 -0.600 0.778 sum 4.141 3.463 -12.290 13.424 Atomic orbital electron populations 1.21832 0.92605 1.03258 1.02862 1.22409 0.95531 0.92519 0.87643 1.22393 1.02029 0.96236 1.03084 1.86286 1.28877 1.67511 1.37516 1.19247 0.84784 0.94140 0.93571 1.21045 0.95504 1.06148 0.99036 1.20626 0.95596 0.97700 0.97757 1.20627 0.87665 1.03185 0.97548 1.98330 1.25434 1.83781 1.98394 1.21027 0.92213 1.00477 0.96701 1.17997 0.92533 0.95985 0.92732 1.19473 1.14444 0.96899 1.02565 1.22618 0.91524 0.93849 0.90769 1.68641 1.15572 1.35472 1.11594 1.19948 0.89924 0.82780 0.92291 1.19456 1.21476 0.95244 1.05644 0.88691 1.26189 0.96616 0.94605 0.99131 1.70149 1.29015 0.99283 1.33538 0.86070 0.79323 0.80238 0.80124 1.18012 1.19552 1.19571 1.69366 1.17897 1.22699 1.12510 1.22929 0.88358 0.96682 0.89820 0.91162 0.90938 0.91679 0.91320 0.91376 0.91150 0.91895 0.85071 0.85615 0.84739 0.85411 0.91191 0.85530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.56 37.16 0.36 -1.34 16 2 C 0.08 0.93 2.85 -26.73 -0.08 0.85 16 3 C -0.18 -1.90 9.17 37.16 0.34 -1.56 16 4 O -0.29 -4.84 8.23 -19.03 -0.16 -5.00 16 5 C 0.13 2.13 6.54 -38.72 -0.25 1.87 16 6 C -0.20 -2.67 8.23 -39.49 -0.33 -3.00 16 7 C -0.10 -1.28 9.82 -39.45 -0.39 -1.67 16 8 C -0.06 -0.92 6.31 -39.54 -0.25 -1.17 16 9 Cl -0.09 -1.15 28.94 -51.86 -1.50 -2.65 16 10 C -0.09 -1.39 9.33 -39.16 -0.37 -1.76 16 11 C 0.01 0.19 5.53 -104.72 -0.58 -0.39 16 12 C -0.32 -7.11 5.31 -104.28 -0.55 -7.66 16 13 C 0.19 4.28 10.86 -16.81 -0.18 4.10 16 14 N -0.59 -15.64 10.33 -12.40 -0.13 -15.77 16 15 C 0.38 10.73 7.35 -158.15 -1.16 9.56 16 16 C -0.38 -10.35 9.35 -37.83 -0.35 -10.70 16 17 H 0.10 2.46 7.85 -52.49 -0.41 2.04 16 18 C 0.06 1.55 5.50 -17.34 -0.10 1.45 16 19 N -0.70 -17.97 11.40 55.56 0.63 -17.33 16 20 Si 0.92 18.01 29.56 -169.99 -5.02 12.99 16 21 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 22 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 23 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 24 N -0.51 -13.93 7.82 -12.40 -0.10 -14.03 16 25 C 0.20 4.79 10.11 -16.81 -0.17 4.62 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.74 6.32 -51.93 -0.33 0.41 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.67 6.90 -51.93 -0.36 0.31 16 33 H 0.13 1.43 5.42 -52.48 -0.28 1.15 16 34 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 36 H 0.13 2.52 8.06 -52.48 -0.42 2.10 16 37 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 38 H 0.13 2.85 7.77 -52.49 -0.41 2.44 16 LS Contribution 340.86 15.07 5.14 5.14 Total: -1.00 -29.42 340.86 -9.50 -38.92 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -4.31 Total: 4.53 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -4.06 Total: -6.79 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.41 Total: -47.13 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.16 Total: -5.00 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.02 Total: 12.99 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.50 Total: -2.65 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.42 -9.50 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235941168.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.914 kcal (2) G-P(sol) polarization free energy of solvation -29.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds