Wall clock time and date at job start Tue Mar 31 2020 11:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47634 * 2 1 4 4 O 1.42900 * 109.47134 * 120.00185 * 2 1 3 5 5 C 1.35926 * 117.00138 * 84.81187 * 4 2 1 6 6 C 1.38375 * 119.98381 * 354.58044 * 5 4 2 7 7 C 1.39597 * 119.80514 * 179.97438 * 6 5 4 8 8 C 1.47903 * 120.10462 * 179.97438 * 7 6 5 9 9 C 1.40450 * 120.79275 * 180.02562 * 8 7 6 10 10 N 1.31578 * 119.09621 * 180.02562 * 9 8 7 11 11 C 1.33661 * 120.82742 * 359.97438 * 10 9 8 12 12 C 1.41063 * 119.12657 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00380 * 359.97438 * 12 11 10 14 14 C 1.40138 * 119.99635 * 180.02562 * 12 11 10 15 15 N 1.30663 * 120.00209 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 119.99788 * 180.27318 * 14 12 11 17 17 H 1.48499 * 109.46805 * 179.72332 * 16 14 12 18 18 H 1.48498 * 109.47052 * 299.72421 * 16 14 12 19 19 H 1.48496 * 109.46901 * 59.72713 * 16 14 12 20 20 N 1.33647 * 121.73702 * 0.27663 * 11 10 9 21 21 C 1.31585 * 120.83415 * 359.44020 * 20 11 10 22 22 C 1.39712 * 119.78391 * 0.25758 * 7 6 5 23 23 C 1.37906 * 119.96963 * 359.49049 * 22 7 6 24 24 C 1.38459 * 120.18955 * 0.51017 * 23 22 7 25 25 Cl 1.73598 * 119.88902 * 179.72114 * 24 23 22 26 26 H 1.09002 * 109.47039 * 59.99832 * 1 2 3 27 27 H 1.08995 * 109.47203 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47129 * 299.99716 * 1 2 3 29 29 H 1.09004 * 109.47144 * 239.99836 * 2 1 3 30 30 H 1.08998 * 109.47438 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47045 * 300.00164 * 3 2 1 32 32 H 1.09004 * 109.46988 * 59.99741 * 3 2 1 33 33 H 1.08000 * 120.09570 * 0.02562 * 6 5 4 34 34 H 1.08004 * 120.44880 * 0.03592 * 9 8 7 35 35 H 0.97002 * 120.00206 * 179.97438 * 15 14 12 36 36 H 1.07999 * 120.45749 * 180.27907 * 21 20 11 37 37 H 1.08006 * 120.01897 * 179.72288 * 22 7 6 38 38 H 1.07994 * 119.90685 * 180.23257 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1088 -2.0274 1.0991 6 6 1.6541 -2.7002 -0.0213 7 6 1.7616 -4.0905 -0.0870 8 6 1.2772 -4.8164 -1.2811 9 6 1.3778 -6.2149 -1.3623 10 7 0.9366 -6.8266 -2.4405 11 6 0.3983 -6.1341 -3.4490 12 6 -0.0636 -6.8265 -4.5879 13 1 0.0204 -7.9022 -4.6369 14 6 -0.6307 -6.1186 -5.6561 15 7 -0.7310 -4.8171 -5.5974 16 14 -1.2494 -7.0362 -7.1610 17 1 -1.8059 -6.0661 -8.1381 18 1 -0.1248 -7.7779 -7.7856 19 1 -2.3096 -7.9938 -6.7557 20 7 0.2907 -4.8026 -3.4090 21 6 0.7053 -4.1237 -2.3608 22 6 2.3229 -4.7944 0.9814 23 6 2.7779 -4.1142 2.0914 24 6 2.6707 -2.7353 2.1554 25 17 3.2394 -1.8876 3.5595 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.2180 -2.1513 -0.8428 34 1 1.8112 -6.7805 -0.5507 35 1 -1.1232 -4.3270 -6.3370 36 1 0.6113 -3.0481 -2.3330 37 1 2.4039 -5.8705 0.9364 38 1 3.2150 -4.6590 2.9150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236409281.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:35 Heat of formation + Delta-G solvation = 0.147329 kcal Electronic energy + Delta-G solvation = -23298.719065 eV Core-core repulsion = 19745.422798 eV Total energy + Delta-G solvation = -3553.296267 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.45478 -40.69926 -38.69662 -37.29410 -35.85006 -34.32443 -33.92940 -33.19963 -31.20805 -30.31161 -28.18171 -27.81602 -25.29515 -24.60059 -23.63339 -22.37066 -21.61750 -19.89924 -19.23738 -18.03276 -17.58780 -17.01795 -16.60449 -16.47265 -16.20965 -15.91340 -15.25599 -15.05179 -14.81398 -14.46897 -14.44129 -14.12402 -13.83458 -13.39209 -13.22041 -13.21356 -13.00328 -12.97703 -12.80461 -12.71621 -12.49100 -12.43696 -12.00571 -11.87326 -11.73960 -11.60447 -11.35872 -11.20627 -11.07725 -10.40899 -9.47398 -9.35219 -8.88399 -8.54510 -6.78474 -0.20770 0.42441 0.93923 1.05609 1.29643 1.39258 1.53484 1.53557 2.15740 2.17286 2.56990 2.90105 3.73962 3.77648 3.84718 3.86779 3.91811 3.97367 4.03740 4.13953 4.22170 4.30351 4.35343 4.51258 4.68926 4.76120 4.79422 4.85094 4.87224 4.95970 4.97797 5.14500 5.18698 5.23105 5.27861 5.29926 5.65991 5.76879 5.78476 6.04336 6.36791 6.40805 6.49065 7.08012 8.10491 8.23985 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018601 B = 0.003275 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.958920 B = 8546.496821 C = 9918.667123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.067 3.933 3 C -0.141 4.141 4 O -0.310 6.310 5 C 0.148 3.852 6 C -0.226 4.226 7 C 0.058 3.942 8 C -0.324 4.324 9 C 0.183 3.817 10 N -0.618 5.618 11 C 0.351 3.649 12 C -0.410 4.410 13 H 0.096 0.904 14 C 0.021 3.979 15 N -0.730 5.730 16 Si 1.002 2.998 17 H -0.260 1.260 18 H -0.256 1.256 19 H -0.257 1.257 20 N -0.539 5.539 21 C 0.169 3.831 22 C -0.168 4.168 23 C -0.054 4.054 24 C -0.110 4.110 25 Cl -0.067 7.067 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.171 0.829 35 H 0.290 0.710 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.491 8.711 9.012 13.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.011 3.989 3 C -0.198 4.198 4 O -0.224 6.224 5 C 0.101 3.899 6 C -0.245 4.245 7 C 0.056 3.944 8 C -0.333 4.333 9 C 0.009 3.991 10 N -0.337 5.337 11 C 0.118 3.882 12 C -0.443 4.443 13 H 0.114 0.886 14 C -0.205 4.205 15 N -0.350 5.350 16 Si 0.820 3.180 17 H -0.184 1.184 18 H -0.180 1.180 19 H -0.181 1.181 20 N -0.255 5.255 21 C -0.007 4.007 22 C -0.187 4.187 23 C -0.072 4.072 24 C -0.138 4.138 25 Cl -0.039 7.039 26 H 0.108 0.892 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.154 0.846 34 H 0.187 0.813 35 H 0.101 0.899 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.115 8.581 8.205 12.274 hybrid contribution -0.012 0.240 0.135 0.276 sum 3.103 8.821 8.340 12.530 Atomic orbital electron populations 1.22366 0.94461 1.02591 1.04062 1.22713 0.94970 0.94625 0.86581 1.21846 1.01954 0.91933 1.04095 1.86155 1.81039 1.15294 1.39960 1.18558 0.94857 0.83433 0.93050 1.21237 1.09477 0.94586 0.99194 1.18523 0.92103 0.91910 0.91876 1.19920 1.18736 0.95574 0.99106 1.23332 0.90149 0.91291 0.94346 1.68693 1.20067 1.41180 1.03739 1.20357 0.89416 0.86542 0.91898 1.19858 1.30780 0.95842 0.97869 0.88569 1.27171 0.94415 0.95858 1.03052 1.70156 1.25085 1.08899 1.30888 0.84960 0.79368 0.78597 0.75060 1.18419 1.18041 1.18066 1.69317 1.22441 1.08562 1.25209 1.23441 0.89078 0.99846 0.88331 1.21216 1.03284 1.00947 0.93213 1.20975 0.97088 0.90548 0.98630 1.20273 1.10442 0.92593 0.90478 1.98316 1.87938 1.78146 1.39479 0.89234 0.93387 0.91085 0.91211 0.91848 0.88533 0.91162 0.84633 0.81253 0.89914 0.83460 0.83670 0.82073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.79 9.17 71.98 0.66 -3.13 16 2 C 0.07 1.51 2.85 30.59 0.09 1.60 16 3 C -0.14 -2.41 9.56 71.98 0.69 -1.72 16 4 O -0.31 -8.67 9.25 -92.72 -0.86 -9.53 16 5 C 0.15 4.47 6.59 22.49 0.15 4.61 16 6 C -0.23 -7.28 7.64 22.63 0.17 -7.10 16 7 C 0.06 2.01 5.88 -20.03 -0.12 1.89 16 8 C -0.32 -13.57 5.94 -19.64 -0.12 -13.68 16 9 C 0.18 7.92 10.70 85.27 0.91 8.83 16 10 N -0.62 -31.84 10.34 -193.17 -2.00 -33.84 16 11 C 0.35 19.46 7.35 134.90 0.99 20.46 16 12 C -0.41 -21.90 9.35 23.42 0.22 -21.69 16 13 H 0.10 4.91 7.85 -2.91 -0.02 4.89 16 14 C 0.02 0.99 5.50 85.33 0.47 1.46 16 15 N -0.73 -36.64 11.40 21.85 0.25 -36.39 16 16 Si 1.00 35.38 29.56 68.60 2.03 37.41 16 17 H -0.26 -8.51 7.11 99.48 0.71 -7.81 16 18 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 19 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 20 N -0.54 -29.09 7.83 -193.16 -1.51 -30.60 16 21 C 0.17 7.80 10.70 85.27 0.91 8.71 16 22 C -0.17 -4.88 9.45 22.55 0.21 -4.66 16 23 C -0.05 -1.39 9.81 22.24 0.22 -1.18 16 24 C -0.11 -3.14 6.34 22.51 0.14 -3.00 16 25 Cl -0.07 -1.73 28.49 -2.72 -0.08 -1.81 16 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.05 1.20 6.89 -2.39 -0.02 1.19 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.67 6.32 -2.39 -0.02 1.65 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.14 4.23 3.64 -2.91 -0.01 4.22 16 34 H 0.17 5.85 6.33 -2.91 -0.02 5.84 16 35 H 0.29 12.87 8.29 -92.71 -0.77 12.10 16 36 H 0.15 5.95 6.33 -2.91 -0.02 5.93 16 37 H 0.15 3.66 6.28 -2.91 -0.02 3.64 16 38 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -62.93 335.69 4.55 -58.39 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 1.11 Total: 24.97 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 5.60 Total: -8.60 kcal Atomic # 7 Polarization: -97.57 SS G_CDS: -3.26 Total: -100.83 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.86 Total: -9.53 kcal Atomic # 14 Polarization: 35.38 SS G_CDS: 2.03 Total: 37.41 kcal Atomic # 17 Polarization: -1.73 SS G_CDS: -0.08 Total: -1.81 kcal Total: -62.93 4.55 -58.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236409281.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.536 kcal (2) G-P(sol) polarization free energy of solvation -62.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds