Wall clock time and date at job start Tue Mar 31 2020 11:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46916 * 2 1 4 4 O 1.42901 * 109.47056 * 180.02562 * 3 2 1 5 5 C 1.35804 * 117.00240 * 180.02562 * 4 3 2 6 6 C 1.38605 * 120.11748 * 0.22771 * 5 4 3 7 7 C 1.38147 * 120.08837 * 180.25969 * 6 5 4 8 8 C 1.38543 * 120.30620 * 359.74205 * 7 6 5 9 9 Cl 1.73600 * 119.88029 * 180.02562 * 8 7 6 10 10 C 1.38036 * 120.23174 * 0.02562 * 8 7 6 11 11 C 1.39408 * 119.91344 * 359.97438 * 10 8 7 12 12 C 1.48171 * 120.15561 * 179.97438 * 11 10 8 13 13 C 1.40112 * 119.99671 * 132.07543 * 12 11 10 14 14 N 1.32153 * 120.29074 * 179.97438 * 13 12 11 15 15 C 1.31900 * 120.29260 * 359.75462 * 14 13 12 16 16 C 1.40811 * 119.97864 * 0.52378 * 15 14 13 17 17 C 1.41313 * 120.14513 * 179.72977 * 16 15 14 18 18 H 1.08003 * 120.00006 * 6.23369 * 17 16 15 19 19 C 1.40045 * 120.00244 * 186.24039 * 17 16 15 20 20 N 1.30730 * 120.00304 * 184.67684 * 19 17 16 21 21 Si 1.86798 * 119.99684 * 4.67428 * 19 17 16 22 22 H 1.48509 * 109.47087 * 180.02562 * 21 19 17 23 23 H 1.48499 * 109.47312 * 300.00130 * 21 19 17 24 24 H 1.48504 * 109.47372 * 60.00498 * 21 19 17 25 25 N 1.32562 * 119.99190 * 312.10081 * 12 11 10 26 26 H 1.09000 * 109.47239 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47249 * 300.00295 * 1 2 3 28 28 H 1.09005 * 109.47083 * 60.00114 * 1 2 3 29 29 H 1.09001 * 109.47023 * 239.99973 * 2 1 3 30 30 H 1.08996 * 109.47158 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47296 * 60.00140 * 3 2 1 32 32 H 1.09005 * 109.47152 * 299.99845 * 3 2 1 33 33 H 1.08007 * 119.95331 * 0.02562 * 6 5 4 34 34 H 1.07995 * 119.84595 * 179.71918 * 7 6 5 35 35 H 1.08001 * 120.04599 * 179.97438 * 10 8 7 36 36 H 1.08001 * 119.84915 * 0.02849 * 13 12 11 37 37 H 1.08002 * 120.01073 * 180.26002 * 15 14 13 38 38 H 0.97002 * 119.99795 * 354.90635 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0855 2.6526 -0.0001 6 6 3.3330 3.8166 0.0056 7 6 3.9608 5.0471 0.0007 8 6 5.3440 5.1263 -0.0047 9 17 6.1213 6.6785 -0.0102 10 6 6.1060 3.9754 -0.0057 11 6 5.4823 2.7286 -0.0007 12 6 6.2951 1.4897 -0.0023 13 6 6.0035 0.4595 0.9015 14 7 6.7243 -0.6481 0.9048 15 6 7.7215 -0.7956 0.0541 16 6 8.0286 0.2346 -0.8554 17 6 9.0997 0.0827 -1.7645 18 1 9.6204 -0.8610 -1.8327 19 6 9.4862 1.1559 -2.5770 20 7 10.4152 0.9896 -3.4816 21 14 8.6741 2.8251 -2.3681 22 1 9.2561 3.7840 -3.3415 23 1 7.2144 2.6993 -2.6103 24 1 8.9060 3.3192 -0.9870 25 7 7.2983 1.3564 -0.8585 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 2.2544 3.7614 0.0102 34 1 3.3707 5.9516 0.0006 35 1 7.1840 4.0406 -0.0103 36 1 5.1856 0.5709 1.5979 37 1 8.3049 -1.7044 0.0579 38 1 10.8886 0.1450 -3.5410 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236452043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:56 Heat of formation + Delta-G solvation = -6.096573 kcal Electronic energy + Delta-G solvation = -23859.868168 eV Core-core repulsion = 20306.301145 eV Total energy + Delta-G solvation = -3553.567023 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.37496 -39.13904 -37.72995 -36.14693 -34.27409 -34.01040 -33.13101 -31.78238 -30.01078 -29.11582 -26.67451 -25.95112 -24.10831 -22.55405 -22.23560 -21.36405 -20.68224 -18.61316 -18.13303 -16.59084 -16.40435 -16.30923 -15.74102 -15.59674 -14.74692 -14.40410 -14.29511 -14.15780 -13.51827 -13.37589 -13.10205 -12.96474 -12.82230 -12.46062 -12.36539 -12.05246 -11.94200 -11.74724 -11.38204 -11.23992 -11.08344 -11.05511 -10.94834 -10.65086 -10.49345 -9.89961 -9.83001 -9.46399 -9.15498 -9.00734 -8.27172 -7.79503 -7.72838 -7.22067 -4.97213 1.08051 1.30793 2.19369 2.31992 2.55754 3.15013 3.48147 3.55436 3.70289 3.89319 4.28875 4.50101 4.59670 4.68473 4.72049 4.84118 5.02441 5.05575 5.12595 5.21147 5.29005 5.38616 5.45839 5.56450 5.71453 5.76610 5.80353 5.90001 5.91406 6.03834 6.07516 6.12579 6.28651 6.35820 6.60702 6.66999 6.81301 7.24596 7.28447 7.42212 7.83184 8.00332 8.37307 8.78668 9.26781 9.82501 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009230 B = 0.006211 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.934562 B = 4506.847757 C = 6810.850490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C 0.056 3.944 4 O -0.295 6.295 5 C 0.154 3.846 6 C -0.202 4.202 7 C -0.070 4.070 8 C -0.074 4.074 9 Cl -0.076 7.076 10 C -0.050 4.050 11 C -0.040 4.040 12 C 0.171 3.829 13 C -0.079 4.079 14 N -0.421 5.421 15 C -0.040 4.040 16 C 0.201 3.799 17 C -0.454 4.454 18 H 0.089 0.911 19 C 0.044 3.956 20 N -0.792 5.792 21 Si 1.136 2.864 22 H -0.324 1.324 23 H -0.269 1.269 24 H -0.289 1.289 25 N -0.533 5.533 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.646 5.913 5.527 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.019 4.019 4 O -0.208 6.208 5 C 0.107 3.893 6 C -0.221 4.221 7 C -0.089 4.089 8 C -0.100 4.100 9 Cl -0.047 7.047 10 C -0.069 4.069 11 C -0.042 4.042 12 C 0.028 3.972 13 C -0.236 4.236 14 N -0.131 5.131 15 C -0.212 4.212 16 C 0.076 3.924 17 C -0.486 4.486 18 H 0.107 0.893 19 C -0.179 4.179 20 N -0.413 5.413 21 Si 0.970 3.030 22 H -0.257 1.257 23 H -0.196 1.196 24 H -0.217 1.217 25 N -0.256 5.256 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.162 0.838 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.477 7.224 4.872 17.761 hybrid contribution 0.123 -1.496 0.504 1.584 sum -15.354 5.728 5.376 17.247 Atomic orbital electron populations 1.21680 0.94419 1.02435 1.01964 1.21475 0.95683 0.94876 1.04206 1.22917 0.78808 0.98998 1.01218 1.86235 1.20801 1.26055 1.87671 1.18953 0.90999 0.84593 0.94732 1.21017 1.00029 0.91273 1.09772 1.20770 0.92141 0.97861 0.98138 1.20612 0.92750 0.86415 1.10244 1.98347 1.81352 1.27709 1.97284 1.21161 1.01093 0.89083 0.95550 1.17840 0.89194 0.92442 1.04765 1.19964 0.92519 0.92194 0.92532 1.22390 1.04441 0.92048 1.04698 1.67724 1.03662 1.21682 1.20065 1.23169 0.99408 1.00846 0.97748 1.19416 0.92179 0.88351 0.92441 1.20785 1.11292 1.00727 1.15843 0.89272 1.27787 0.94095 1.06669 0.89318 1.70635 1.16235 1.29199 1.25187 0.82227 0.76124 0.69937 0.74725 1.25711 1.19624 1.21712 1.67591 1.09185 1.24676 1.24145 0.91799 0.92471 0.92499 0.90697 0.90540 0.91969 0.92089 0.84508 0.84769 0.83760 0.84678 0.84284 0.90201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -1.26 6.30 -26.73 -0.17 -1.43 16 3 C 0.06 0.61 4.74 37.16 0.18 0.79 16 4 O -0.30 -4.68 8.32 -19.13 -0.16 -4.84 16 5 C 0.15 2.53 6.58 -38.83 -0.26 2.27 16 6 C -0.20 -2.60 9.03 -39.48 -0.36 -2.95 16 7 C -0.07 -0.89 9.81 -39.50 -0.39 -1.28 16 8 C -0.07 -1.12 6.31 -39.54 -0.25 -1.37 16 9 Cl -0.08 -1.05 28.95 -51.86 -1.50 -2.56 16 10 C -0.05 -0.91 9.01 -39.22 -0.35 -1.26 16 11 C -0.04 -0.78 5.63 -104.77 -0.59 -1.37 16 12 C 0.17 3.93 6.14 -82.77 -0.51 3.42 16 13 C -0.08 -1.76 9.95 -16.71 -0.17 -1.93 16 14 N -0.42 -9.92 10.47 -12.04 -0.13 -10.05 16 15 C -0.04 -0.97 10.97 -16.55 -0.18 -1.16 16 16 C 0.20 5.21 6.38 -84.84 -0.54 4.67 16 17 C -0.45 -11.98 9.59 -37.74 -0.36 -12.35 16 18 H 0.09 2.29 8.05 -52.48 -0.42 1.87 16 19 C 0.04 1.18 5.52 -17.34 -0.10 1.09 16 20 N -0.79 -21.02 13.65 55.55 0.76 -20.26 16 21 Si 1.14 28.00 24.42 -169.99 -4.15 23.85 16 22 H -0.32 -7.92 7.11 56.52 0.40 -7.51 16 23 H -0.27 -6.72 6.58 56.52 0.37 -6.35 16 24 H -0.29 -6.93 6.28 56.52 0.35 -6.58 16 25 N -0.53 -13.55 4.58 -7.52 -0.03 -13.59 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.56 7.65 -51.93 -0.40 0.17 16 32 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 33 H 0.14 1.30 6.30 -52.48 -0.33 0.97 16 34 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.14 2.84 6.36 -52.49 -0.33 2.51 16 36 H 0.14 2.72 7.53 -52.49 -0.40 2.32 16 37 H 0.14 3.04 8.06 -52.49 -0.42 2.62 16 38 H 0.29 7.19 8.72 -40.82 -0.36 6.83 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -29.03 335.34 -8.30 -37.32 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -4.47 Total: -1.35 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -3.67 Total: -13.59 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: 0.60 Total: -43.90 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.16 Total: -4.84 kcal Atomic # 14 Polarization: 28.00 SS G_CDS: -4.15 Total: 23.85 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.03 -8.30 -37.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236452043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.226 kcal (2) G-P(sol) polarization free energy of solvation -29.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds