Wall clock time and date at job start Tue Mar 31 2020 11:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46916 * 2 1 4 4 O 1.42901 * 109.47056 * 180.02562 * 3 2 1 5 5 C 1.35804 * 117.00240 * 180.02562 * 4 3 2 6 6 C 1.38605 * 120.11748 * 0.22771 * 5 4 3 7 7 C 1.38147 * 120.08837 * 180.25969 * 6 5 4 8 8 C 1.38543 * 120.30620 * 359.74205 * 7 6 5 9 9 Cl 1.73600 * 119.88029 * 180.02562 * 8 7 6 10 10 C 1.38036 * 120.23174 * 0.02562 * 8 7 6 11 11 C 1.39408 * 119.91344 * 359.97438 * 10 8 7 12 12 C 1.48171 * 120.15561 * 179.97438 * 11 10 8 13 13 C 1.40112 * 119.99671 * 132.07543 * 12 11 10 14 14 N 1.32153 * 120.29074 * 179.97438 * 13 12 11 15 15 C 1.31900 * 120.29260 * 359.75462 * 14 13 12 16 16 C 1.40811 * 119.97864 * 0.52378 * 15 14 13 17 17 C 1.41313 * 120.14513 * 179.72977 * 16 15 14 18 18 H 1.08003 * 120.00006 * 6.23369 * 17 16 15 19 19 C 1.40045 * 120.00244 * 186.24039 * 17 16 15 20 20 N 1.30730 * 120.00304 * 184.67684 * 19 17 16 21 21 Si 1.86798 * 119.99684 * 4.67428 * 19 17 16 22 22 H 1.48509 * 109.47087 * 180.02562 * 21 19 17 23 23 H 1.48499 * 109.47312 * 300.00130 * 21 19 17 24 24 H 1.48504 * 109.47372 * 60.00498 * 21 19 17 25 25 N 1.32562 * 119.99190 * 312.10081 * 12 11 10 26 26 H 1.09000 * 109.47239 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47249 * 300.00295 * 1 2 3 28 28 H 1.09005 * 109.47083 * 60.00114 * 1 2 3 29 29 H 1.09001 * 109.47023 * 239.99973 * 2 1 3 30 30 H 1.08996 * 109.47158 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47296 * 60.00140 * 3 2 1 32 32 H 1.09005 * 109.47152 * 299.99845 * 3 2 1 33 33 H 1.08007 * 119.95331 * 0.02562 * 6 5 4 34 34 H 1.07995 * 119.84595 * 179.71918 * 7 6 5 35 35 H 1.08001 * 120.04599 * 179.97438 * 10 8 7 36 36 H 1.08001 * 119.84915 * 0.02849 * 13 12 11 37 37 H 1.08002 * 120.01073 * 180.26002 * 15 14 13 38 38 H 0.97002 * 119.99795 * 354.90635 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0855 2.6526 -0.0001 6 6 3.3330 3.8166 0.0056 7 6 3.9608 5.0471 0.0007 8 6 5.3440 5.1263 -0.0047 9 17 6.1213 6.6785 -0.0102 10 6 6.1060 3.9754 -0.0057 11 6 5.4823 2.7286 -0.0007 12 6 6.2951 1.4897 -0.0023 13 6 6.0035 0.4595 0.9015 14 7 6.7243 -0.6481 0.9048 15 6 7.7215 -0.7956 0.0541 16 6 8.0286 0.2346 -0.8554 17 6 9.0997 0.0827 -1.7645 18 1 9.6204 -0.8610 -1.8327 19 6 9.4862 1.1559 -2.5770 20 7 10.4152 0.9896 -3.4816 21 14 8.6741 2.8251 -2.3681 22 1 9.2561 3.7840 -3.3415 23 1 7.2144 2.6993 -2.6103 24 1 8.9060 3.3192 -0.9870 25 7 7.2983 1.3564 -0.8585 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 2.2544 3.7614 0.0102 34 1 3.3707 5.9516 0.0006 35 1 7.1840 4.0406 -0.0103 36 1 5.1856 0.5709 1.5979 37 1 8.3049 -1.7044 0.0579 38 1 10.8886 0.1450 -3.5410 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236452043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:55 Heat of formation + Delta-G solvation = -22.185914 kcal Electronic energy + Delta-G solvation = -23860.565854 eV Core-core repulsion = 20306.301145 eV Total energy + Delta-G solvation = -3554.264709 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.73986 -40.78305 -38.86138 -37.27787 -36.23229 -34.90848 -34.75553 -33.49401 -31.32675 -30.51939 -27.86714 -27.45590 -25.68133 -24.02580 -23.55930 -22.59184 -21.93920 -20.58853 -19.30272 -18.13092 -17.81297 -17.50127 -17.25805 -17.01837 -16.15360 -15.91539 -15.45976 -15.28361 -15.05366 -14.96428 -14.72161 -14.36882 -14.17081 -13.66515 -13.46709 -13.39377 -13.20759 -12.93989 -12.87186 -12.81591 -12.43509 -12.01475 -11.99293 -11.89704 -11.73310 -11.65303 -11.43917 -11.39984 -11.08987 -10.49835 -9.81086 -9.73446 -9.27217 -9.01544 -6.97803 -0.26395 0.12490 0.48906 0.68758 1.12181 1.48088 1.59394 1.91094 2.12396 2.31992 2.42442 2.59122 3.18968 3.42076 3.69287 3.82804 3.91500 3.97408 3.98884 4.02848 4.14045 4.28121 4.33296 4.41759 4.54226 4.58924 4.64896 4.76479 4.81603 4.82429 5.00782 5.08856 5.13899 5.16213 5.19952 5.25703 5.36225 5.39606 5.49988 5.83747 6.06006 6.35310 6.40205 6.88582 7.36788 7.81614 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009230 B = 0.006211 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.934562 B = 4506.847757 C = 6810.850490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.126 4.126 3 C 0.047 3.953 4 O -0.323 6.323 5 C 0.155 3.845 6 C -0.184 4.184 7 C -0.048 4.048 8 C -0.081 4.081 9 Cl -0.066 7.066 10 C -0.066 4.066 11 C -0.084 4.084 12 C 0.168 3.832 13 C -0.068 4.068 14 N -0.425 5.425 15 C -0.055 4.055 16 C 0.189 3.811 17 C -0.481 4.481 18 H 0.085 0.915 19 C 0.023 3.977 20 N -0.812 5.812 21 Si 1.163 2.837 22 H -0.323 1.323 23 H -0.277 1.277 24 H -0.289 1.289 25 N -0.551 5.551 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.182 0.818 34 H 0.176 0.824 35 H 0.118 0.882 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.448 7.776 6.587 21.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C -0.027 4.027 4 O -0.236 6.236 5 C 0.108 3.892 6 C -0.202 4.202 7 C -0.066 4.066 8 C -0.108 4.108 9 Cl -0.038 7.038 10 C -0.085 4.085 11 C -0.086 4.086 12 C 0.025 3.975 13 C -0.225 4.225 14 N -0.137 5.137 15 C -0.224 4.224 16 C 0.063 3.937 17 C -0.515 4.515 18 H 0.103 0.897 19 C -0.196 4.196 20 N -0.435 5.435 21 Si 0.996 3.004 22 H -0.255 1.255 23 H -0.205 1.205 24 H -0.217 1.217 25 N -0.274 5.274 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.199 0.801 34 H 0.194 0.806 35 H 0.136 0.864 36 H 0.177 0.823 37 H 0.172 0.828 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.271 9.065 5.936 22.108 hybrid contribution 1.042 -2.031 0.324 2.306 sum -18.228 7.034 6.260 20.517 Atomic orbital electron populations 1.21649 0.92012 1.03086 1.03106 1.21505 0.97660 0.94430 1.02728 1.23288 0.76299 0.99813 1.03311 1.86199 1.23595 1.26338 1.87504 1.19025 0.89984 0.86033 0.94167 1.21464 1.01883 0.89686 1.07211 1.21271 0.91054 0.99519 0.94795 1.20718 0.93823 0.85907 1.10335 1.98351 1.81536 1.26623 1.97242 1.20980 1.00202 0.90177 0.97188 1.17814 0.90601 0.91176 1.09049 1.20556 0.91743 0.93886 0.91285 1.22869 1.04081 0.91406 1.04165 1.67783 1.03656 1.22308 1.19922 1.23349 1.00014 1.01212 0.97811 1.19605 0.92220 0.89170 0.92665 1.20782 1.12519 1.00826 1.17326 0.89735 1.28250 0.94246 1.07843 0.89299 1.70631 1.17211 1.29595 1.26016 0.81853 0.75173 0.68804 0.74597 1.25549 1.20487 1.21680 1.67560 1.10098 1.24637 1.25117 0.91516 0.91022 0.91590 0.92700 0.91608 0.89212 0.90341 0.80117 0.80626 0.86356 0.82262 0.82769 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.91 71.98 0.71 -0.90 16 2 C -0.13 -2.25 6.30 30.59 0.19 -2.06 16 3 C 0.05 0.85 4.74 71.98 0.34 1.19 16 4 O -0.32 -9.46 8.32 -91.35 -0.76 -10.22 16 5 C 0.16 4.66 6.58 22.76 0.15 4.81 16 6 C -0.18 -3.80 9.03 22.34 0.20 -3.60 16 7 C -0.05 -0.99 9.81 22.32 0.22 -0.77 16 8 C -0.08 -2.28 6.31 22.29 0.14 -2.14 16 9 Cl -0.07 -1.71 28.95 -2.72 -0.08 -1.79 16 10 C -0.07 -2.38 9.01 22.50 0.20 -2.18 16 11 C -0.08 -3.20 5.63 -19.96 -0.11 -3.32 16 12 C 0.17 7.73 6.14 42.13 0.26 7.99 16 13 C -0.07 -2.98 9.95 85.10 0.85 -2.14 16 14 N -0.43 -20.02 10.47 -192.00 -2.01 -22.03 16 15 C -0.06 -2.71 10.97 85.31 0.94 -1.77 16 16 C 0.19 10.07 6.38 40.22 0.26 10.33 16 17 C -0.48 -26.40 9.59 23.46 0.23 -26.18 16 18 H 0.08 4.56 8.05 -2.91 -0.02 4.53 16 19 C 0.02 1.29 5.52 85.30 0.47 1.76 16 20 N -0.81 -44.42 13.65 21.84 0.30 -44.12 16 21 Si 1.16 58.48 24.42 68.60 1.68 60.16 16 22 H -0.32 -15.84 7.11 99.48 0.71 -15.13 16 23 H -0.28 -14.15 6.58 99.48 0.65 -13.50 16 24 H -0.29 -14.26 6.28 99.48 0.62 -13.64 16 25 N -0.55 -28.57 4.58 -177.69 -0.81 -29.39 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.15 7.65 -2.39 -0.02 1.13 16 32 H 0.08 1.16 7.67 -2.38 -0.02 1.14 16 33 H 0.18 2.15 6.30 -2.91 -0.02 2.13 16 34 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.12 4.79 6.36 -2.91 -0.02 4.77 16 36 H 0.16 6.17 7.53 -2.91 -0.02 6.15 16 37 H 0.16 6.89 8.06 -2.91 -0.02 6.86 16 38 H 0.29 15.01 8.72 -92.71 -0.81 14.20 16 Total: -1.00 -65.36 335.34 4.27 -61.09 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 0.91 Total: 5.26 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 5.04 Total: -18.98 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -2.53 Total: -95.54 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.76 Total: -10.22 kcal Atomic # 14 Polarization: 58.48 SS G_CDS: 1.68 Total: 60.16 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.79 kcal Total: -65.36 4.27 -61.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236452043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.907 kcal (2) G-P(sol) polarization free energy of solvation -65.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds