Wall clock time and date at job start Tue Mar 31 2020 11:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47198 * 2 1 4 4 O 1.42906 * 109.47286 * 179.97438 * 3 2 1 5 5 C 1.35778 * 116.99911 * 180.02562 * 4 3 2 6 6 C 1.38559 * 120.13074 * 359.97438 * 5 4 3 7 7 C 1.38185 * 120.10066 * 180.02562 * 6 5 4 8 8 C 1.38663 * 120.36485 * 359.97438 * 7 6 5 9 9 Cl 1.73595 * 119.86572 * 180.02562 * 8 7 6 10 10 C 1.37928 * 120.25913 * 359.78804 * 8 7 6 11 11 C 1.39672 * 119.89538 * 0.46586 * 10 8 7 12 12 C 1.47771 * 120.18388 * 179.79366 * 11 10 8 13 13 C 1.40526 * 120.79511 * 309.72006 * 12 11 10 14 14 N 1.31554 * 119.08459 * 179.97438 * 13 12 11 15 15 C 1.33674 * 120.83915 * 0.02562 * 14 13 12 16 16 C 1.41001 * 119.12479 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00070 * 359.97438 * 16 15 14 18 18 C 1.40130 * 120.00101 * 180.02562 * 16 15 14 19 19 N 1.30673 * 119.99739 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00009 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47351 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47267 * 119.99986 * 20 18 16 23 23 H 1.48499 * 109.46845 * 239.99735 * 20 18 16 24 24 N 1.33675 * 121.74719 * 359.97219 * 15 14 13 25 25 C 1.31552 * 120.83814 * 0.02562 * 24 15 14 26 26 H 1.09002 * 109.47208 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47369 * 299.99733 * 1 2 3 28 28 H 1.09002 * 109.47247 * 59.99550 * 1 2 3 29 29 H 1.08996 * 109.46987 * 240.00299 * 2 1 3 30 30 H 1.09002 * 109.47310 * 119.99664 * 2 1 3 31 31 H 1.09008 * 109.46743 * 59.99884 * 3 2 1 32 32 H 1.09002 * 109.47388 * 300.00363 * 3 2 1 33 33 H 1.08004 * 119.95223 * 0.04945 * 6 5 4 34 34 H 1.08002 * 119.81581 * 180.02562 * 7 6 5 35 35 H 1.08006 * 120.05414 * 180.23496 * 10 8 7 36 36 H 1.08003 * 120.45224 * 0.25711 * 13 12 11 37 37 H 0.96997 * 120.00339 * 180.02562 * 19 18 16 38 38 H 1.08003 * 120.45927 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0854 2.6523 0.0012 6 6 3.3334 3.8161 0.0007 7 6 3.9613 5.0470 0.0008 8 6 5.3456 5.1277 0.0020 9 17 6.1210 6.6809 0.0027 10 6 6.1088 3.9788 0.0074 11 6 5.4854 2.7290 0.0020 12 6 6.2969 1.4940 0.0031 13 6 7.3409 1.3182 -0.9209 14 7 8.0423 0.2057 -0.8894 15 6 7.7718 -0.7497 0.0055 16 6 8.5462 -1.9281 0.0066 17 1 9.3452 -2.0498 -0.7097 18 6 8.2783 -2.9417 0.9363 19 7 7.3111 -2.7946 1.8026 20 14 9.3037 -4.5031 0.9372 21 1 10.3279 -4.4234 -0.1351 22 1 9.9750 -4.6537 2.2533 23 1 8.4230 -5.6737 0.6940 24 7 6.7868 -0.6176 0.8995 25 6 6.0433 0.4672 0.9283 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8901 32 1 1.6766 1.9564 -0.8900 33 1 2.2547 3.7611 0.0006 34 1 3.3706 5.9512 0.0008 35 1 7.1868 4.0456 0.0121 36 1 7.5674 2.0880 -1.6439 37 1 7.1258 -3.4961 2.4465 38 1 5.2493 0.5677 1.6535 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236452106.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:03 Heat of formation + Delta-G solvation = 11.103808 kcal Electronic energy + Delta-G solvation = -23330.459334 eV Core-core repulsion = 19777.638176 eV Total energy + Delta-G solvation = -3552.821158 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.06060 -38.69544 -37.53618 -36.04954 -34.01044 -33.84490 -32.16312 -31.77107 -29.74821 -28.91806 -26.60237 -26.05822 -23.25953 -22.64112 -22.07735 -21.27128 -20.63297 -17.95771 -17.89601 -16.33398 -16.27007 -16.10866 -15.62730 -15.03293 -14.51179 -14.42284 -14.10907 -13.96261 -13.53048 -13.05893 -12.85458 -12.77551 -12.65811 -12.27243 -12.11056 -11.89958 -11.80809 -11.40218 -11.34548 -11.31022 -10.97038 -10.94427 -10.79854 -10.67938 -10.35956 -10.30428 -9.61841 -9.18059 -9.16103 -8.93438 -8.13584 -7.56414 -7.24385 -6.61358 -4.78660 1.36695 1.48105 2.33311 2.56644 2.98254 3.00902 3.05386 3.07103 3.37934 3.81164 3.89781 4.57028 4.80456 4.84941 4.95416 4.99521 5.15643 5.28391 5.32472 5.41130 5.52750 5.60041 5.76010 5.79234 5.86539 5.88757 5.94762 6.03053 6.14513 6.16575 6.26065 6.33500 6.44896 6.48619 6.82493 6.90918 7.00620 7.29582 7.56553 7.71521 8.08498 8.41994 8.49554 9.05913 10.02311 10.22057 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010994 B = 0.004072 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.127336 B = 6874.725175 C = 9100.742832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C 0.058 3.942 4 O -0.295 6.295 5 C 0.127 3.873 6 C -0.196 4.196 7 C -0.098 4.098 8 C -0.063 4.063 9 Cl -0.087 7.087 10 C -0.085 4.085 11 C 0.012 3.988 12 C -0.325 4.325 13 C 0.187 3.813 14 N -0.594 5.594 15 C 0.384 3.616 16 C -0.384 4.384 17 H 0.095 0.905 18 C 0.063 3.937 19 N -0.699 5.699 20 Si 0.920 3.080 21 H -0.257 1.257 22 H -0.270 1.270 23 H -0.271 1.271 24 N -0.509 5.509 25 C 0.199 3.801 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.277 0.723 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.803 8.714 -0.932 13.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C -0.017 4.017 4 O -0.207 6.207 5 C 0.081 3.919 6 C -0.215 4.215 7 C -0.117 4.117 8 C -0.090 4.090 9 Cl -0.059 7.059 10 C -0.104 4.104 11 C 0.009 3.991 12 C -0.335 4.335 13 C 0.013 3.987 14 N -0.313 5.313 15 C 0.151 3.849 16 C -0.418 4.418 17 H 0.113 0.887 18 C -0.166 4.166 19 N -0.320 5.320 20 Si 0.743 3.257 21 H -0.180 1.180 22 H -0.195 1.195 23 H -0.196 1.196 24 N -0.225 5.225 25 C 0.022 3.978 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.088 0.912 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.119 7.521 -0.733 12.629 hybrid contribution -0.444 0.652 0.061 0.792 sum -10.563 8.173 -0.672 13.373 Atomic orbital electron populations 1.21677 0.94592 1.02349 1.01816 1.21471 0.95531 0.95015 1.04280 1.22841 0.79345 0.98725 1.00823 1.86213 1.20230 1.26334 1.87967 1.19246 0.91810 0.84089 0.96804 1.20999 0.99710 0.91613 1.09227 1.20628 0.92176 0.97543 1.01337 1.20626 0.92689 0.85878 1.09767 1.98330 1.81558 1.28651 1.97340 1.21027 1.00095 0.89245 1.00066 1.17987 0.88834 0.92816 0.99473 1.19475 1.06870 0.97988 1.09145 1.22622 0.88792 0.93944 0.93357 1.68642 1.31448 1.03349 1.27838 1.19946 0.88910 0.91473 0.84614 1.19460 1.12600 0.96869 1.12847 0.88676 1.26193 0.95375 1.00530 0.94461 1.70146 1.20994 1.31025 1.09796 0.86066 0.80211 0.79962 0.79491 1.18007 1.19547 1.19568 1.69360 1.07569 1.20927 1.24620 1.22922 0.94222 0.87828 0.92826 0.91851 0.92551 0.92623 0.90748 0.90477 0.92349 0.92462 0.85285 0.85568 0.84692 0.85384 0.91179 0.85546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.15 0.37 -0.90 16 2 C -0.13 -1.46 6.30 -26.73 -0.17 -1.63 16 3 C 0.06 0.71 4.74 37.16 0.18 0.89 16 4 O -0.29 -4.99 8.57 -19.04 -0.16 -5.15 16 5 C 0.13 2.11 6.62 -38.72 -0.26 1.85 16 6 C -0.20 -2.67 9.03 -39.48 -0.36 -3.02 16 7 C -0.10 -1.29 9.82 -39.44 -0.39 -1.67 16 8 C -0.06 -0.91 6.31 -39.54 -0.25 -1.16 16 9 Cl -0.09 -1.14 28.94 -51.86 -1.50 -2.64 16 10 C -0.09 -1.40 9.33 -39.16 -0.37 -1.76 16 11 C 0.01 0.21 5.53 -104.72 -0.58 -0.37 16 12 C -0.32 -7.14 5.31 -104.28 -0.55 -7.70 16 13 C 0.19 4.30 10.86 -16.81 -0.18 4.12 16 14 N -0.59 -15.65 10.33 -12.40 -0.13 -15.78 16 15 C 0.38 10.72 7.35 -158.15 -1.16 9.56 16 16 C -0.38 -10.33 9.35 -37.83 -0.35 -10.68 16 17 H 0.10 2.46 7.85 -52.49 -0.41 2.05 16 18 C 0.06 1.54 5.50 -17.33 -0.10 1.45 16 19 N -0.70 -17.93 11.40 55.56 0.63 -17.29 16 20 Si 0.92 17.99 29.56 -169.99 -5.02 12.96 16 21 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 22 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 23 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 24 N -0.51 -13.93 7.82 -12.40 -0.10 -14.03 16 25 C 0.20 4.79 10.11 -16.81 -0.17 4.62 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.63 7.66 -51.92 -0.40 0.23 16 32 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 33 H 0.13 1.40 6.30 -52.48 -0.33 1.07 16 34 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.14 2.16 8.06 -52.48 -0.42 1.73 16 36 H 0.13 2.52 8.06 -52.48 -0.42 2.10 16 37 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 38 H 0.13 2.84 7.77 -52.48 -0.41 2.43 16 LS Contribution 344.44 15.07 5.19 5.19 Total: -1.00 -29.42 344.44 -9.89 -39.31 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -4.46 Total: 3.83 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -4.34 Total: -6.41 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.41 Total: -47.09 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.16 Total: -5.15 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.02 Total: 12.96 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.50 Total: -2.64 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.42 -9.89 -39.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236452106.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.415 kcal (2) G-P(sol) polarization free energy of solvation -29.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds