Wall clock time and date at job start Tue Mar 31 2020 11:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47198 * 2 1 4 4 O 1.42906 * 109.47286 * 179.97438 * 3 2 1 5 5 C 1.35778 * 116.99911 * 180.02562 * 4 3 2 6 6 C 1.38559 * 120.13074 * 359.97438 * 5 4 3 7 7 C 1.38185 * 120.10066 * 180.02562 * 6 5 4 8 8 C 1.38663 * 120.36485 * 359.97438 * 7 6 5 9 9 Cl 1.73595 * 119.86572 * 180.02562 * 8 7 6 10 10 C 1.37928 * 120.25913 * 359.78804 * 8 7 6 11 11 C 1.39672 * 119.89538 * 0.46586 * 10 8 7 12 12 C 1.47771 * 120.18388 * 179.79366 * 11 10 8 13 13 C 1.40526 * 120.79511 * 309.72006 * 12 11 10 14 14 N 1.31554 * 119.08459 * 179.97438 * 13 12 11 15 15 C 1.33674 * 120.83915 * 0.02562 * 14 13 12 16 16 C 1.41001 * 119.12479 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00070 * 359.97438 * 16 15 14 18 18 C 1.40130 * 120.00101 * 180.02562 * 16 15 14 19 19 N 1.30673 * 119.99739 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00009 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47351 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47267 * 119.99986 * 20 18 16 23 23 H 1.48499 * 109.46845 * 239.99735 * 20 18 16 24 24 N 1.33675 * 121.74719 * 359.97219 * 15 14 13 25 25 C 1.31552 * 120.83814 * 0.02562 * 24 15 14 26 26 H 1.09002 * 109.47208 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47369 * 299.99733 * 1 2 3 28 28 H 1.09002 * 109.47247 * 59.99550 * 1 2 3 29 29 H 1.08996 * 109.46987 * 240.00299 * 2 1 3 30 30 H 1.09002 * 109.47310 * 119.99664 * 2 1 3 31 31 H 1.09008 * 109.46743 * 59.99884 * 3 2 1 32 32 H 1.09002 * 109.47388 * 300.00363 * 3 2 1 33 33 H 1.08004 * 119.95223 * 0.04945 * 6 5 4 34 34 H 1.08002 * 119.81581 * 180.02562 * 7 6 5 35 35 H 1.08006 * 120.05414 * 180.23496 * 10 8 7 36 36 H 1.08003 * 120.45224 * 0.25711 * 13 12 11 37 37 H 0.96997 * 120.00339 * 180.02562 * 19 18 16 38 38 H 1.08003 * 120.45927 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0854 2.6523 0.0012 6 6 3.3334 3.8161 0.0007 7 6 3.9613 5.0470 0.0008 8 6 5.3456 5.1277 0.0020 9 17 6.1210 6.6809 0.0027 10 6 6.1088 3.9788 0.0074 11 6 5.4854 2.7290 0.0020 12 6 6.2969 1.4940 0.0031 13 6 7.3409 1.3182 -0.9209 14 7 8.0423 0.2057 -0.8894 15 6 7.7718 -0.7497 0.0055 16 6 8.5462 -1.9281 0.0066 17 1 9.3452 -2.0498 -0.7097 18 6 8.2783 -2.9417 0.9363 19 7 7.3111 -2.7946 1.8026 20 14 9.3037 -4.5031 0.9372 21 1 10.3279 -4.4234 -0.1351 22 1 9.9750 -4.6537 2.2533 23 1 8.4230 -5.6737 0.6940 24 7 6.7868 -0.6176 0.8995 25 6 6.0433 0.4672 0.9283 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8901 32 1 1.6766 1.9564 -0.8900 33 1 2.2547 3.7611 0.0006 34 1 3.3706 5.9512 0.0008 35 1 7.1868 4.0456 0.0121 36 1 7.5674 2.0880 -1.6439 37 1 7.1258 -3.4961 2.4465 38 1 5.2493 0.5677 1.6535 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236452106.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:02 Heat of formation + Delta-G solvation = -4.069822 kcal Electronic energy + Delta-G solvation = -23331.117312 eV Core-core repulsion = 19777.638176 eV Total energy + Delta-G solvation = -3553.479136 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.39430 -40.45737 -38.71320 -37.17349 -35.80453 -34.79784 -33.83329 -33.57016 -31.09739 -30.41437 -27.95030 -27.37756 -24.85731 -24.34614 -23.34917 -22.54009 -21.91064 -19.81043 -19.10756 -18.02516 -17.53207 -17.19744 -17.07339 -16.77445 -16.16018 -15.63798 -15.18080 -15.02132 -14.86814 -14.75735 -14.50435 -14.10770 -13.90631 -13.62596 -13.29056 -13.08590 -12.95313 -12.88691 -12.76163 -12.69997 -12.43221 -11.97467 -11.93946 -11.92515 -11.77850 -11.40316 -11.35188 -11.12643 -10.97261 -10.39057 -9.59452 -9.32891 -8.84356 -8.45309 -6.73968 0.04850 0.28515 0.82904 1.06860 1.23164 1.39703 1.50437 1.57375 2.18884 2.28559 2.60670 2.77982 3.75786 3.78592 3.92196 3.94689 3.96551 4.00280 4.05885 4.20586 4.25479 4.29077 4.39093 4.48150 4.56522 4.63620 4.78486 4.88627 4.95187 5.05841 5.12860 5.15119 5.17021 5.24462 5.27863 5.34397 5.47637 5.69165 5.78302 6.11463 6.49545 6.53556 6.57966 7.15140 8.18590 8.32684 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010994 B = 0.004072 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.127336 B = 6874.725175 C = 9100.742832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C 0.052 3.948 4 O -0.328 6.328 5 C 0.123 3.877 6 C -0.186 4.186 7 C -0.077 4.077 8 C -0.071 4.071 9 Cl -0.072 7.072 10 C -0.082 4.082 11 C -0.030 4.030 12 C -0.299 4.299 13 C 0.172 3.828 14 N -0.619 5.619 15 C 0.356 3.644 16 C -0.426 4.426 17 H 0.091 0.909 18 C 0.023 3.977 19 N -0.739 5.739 20 Si 1.001 2.999 21 H -0.255 1.255 22 H -0.260 1.260 23 H -0.260 1.260 24 N -0.539 5.539 25 C 0.181 3.819 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.131 0.869 36 H 0.158 0.842 37 H 0.286 0.714 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.806 10.613 -1.019 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C -0.023 4.023 4 O -0.242 6.242 5 C 0.076 3.924 6 C -0.205 4.205 7 C -0.095 4.095 8 C -0.097 4.097 9 Cl -0.043 7.043 10 C -0.101 4.101 11 C -0.032 4.032 12 C -0.308 4.308 13 C -0.001 4.001 14 N -0.339 5.339 15 C 0.121 3.879 16 C -0.460 4.460 17 H 0.109 0.891 18 C -0.202 4.202 19 N -0.360 5.360 20 Si 0.820 3.180 21 H -0.178 1.178 22 H -0.184 1.184 23 H -0.185 1.185 24 N -0.256 5.256 25 C 0.006 3.994 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.182 0.818 34 H 0.180 0.820 35 H 0.149 0.851 36 H 0.176 0.824 37 H 0.097 0.903 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.167 9.491 -0.824 15.453 hybrid contribution -0.013 0.385 0.059 0.389 sum -12.180 9.876 -0.765 15.700 Atomic orbital electron populations 1.21640 0.91832 1.03065 1.03128 1.21501 0.97835 0.94687 1.02394 1.23143 0.77114 0.99270 1.02734 1.86186 1.22860 1.27116 1.88019 1.19363 0.91317 0.85160 0.96527 1.21332 1.01270 0.90359 1.07509 1.21085 0.91720 0.98728 0.98015 1.20695 0.93398 0.85965 1.09665 1.98341 1.81496 1.27205 1.97259 1.20972 1.00167 0.89358 0.99645 1.17866 0.89741 0.91848 1.03761 1.19705 1.05749 0.98625 1.06732 1.23166 0.89001 0.93746 0.94175 1.68643 1.32784 1.04319 1.28128 1.20337 0.89674 0.92447 0.85413 1.19739 1.13574 0.98131 1.14577 0.89062 1.27131 0.96357 1.03455 0.93226 1.70206 1.22555 1.32636 1.10611 0.84884 0.78299 0.75119 0.79742 1.17827 1.18433 1.18469 1.69298 1.08326 1.22622 1.25304 1.23175 0.94287 0.88177 0.93738 0.91545 0.91200 0.91251 0.92687 0.92429 0.90211 0.90389 0.81790 0.82041 0.85101 0.82450 0.90289 0.84722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.91 71.98 0.71 -1.40 16 2 C -0.13 -2.88 6.30 30.59 0.19 -2.69 16 3 C 0.05 1.17 4.74 71.98 0.34 1.51 16 4 O -0.33 -10.92 8.57 -91.06 -0.78 -11.70 16 5 C 0.12 3.88 6.62 22.83 0.15 4.03 16 6 C -0.19 -4.31 9.03 22.33 0.20 -4.11 16 7 C -0.08 -1.68 9.82 22.36 0.22 -1.46 16 8 C -0.07 -1.84 6.31 22.30 0.14 -1.70 16 9 Cl -0.07 -1.67 28.94 -2.72 -0.08 -1.74 16 10 C -0.08 -2.59 9.33 22.54 0.21 -2.38 16 11 C -0.03 -1.08 5.53 -19.93 -0.11 -1.19 16 12 C -0.30 -13.52 5.31 -19.64 -0.10 -13.62 16 13 C 0.17 8.12 10.86 85.29 0.93 9.05 16 14 N -0.62 -34.19 10.33 -193.14 -2.00 -36.19 16 15 C 0.36 21.04 7.35 134.87 0.99 22.03 16 16 C -0.43 -24.17 9.35 23.41 0.22 -23.95 16 17 H 0.09 5.00 7.85 -2.91 -0.02 4.98 16 18 C 0.02 1.16 5.50 85.32 0.47 1.62 16 19 N -0.74 -39.49 11.40 21.85 0.25 -39.24 16 20 Si 1.00 37.80 29.56 68.60 2.03 39.82 16 21 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 22 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 23 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 24 N -0.54 -31.13 7.82 -193.16 -1.51 -32.64 16 25 C 0.18 9.13 10.11 85.29 0.86 9.99 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 31 H 0.08 1.45 7.66 -2.38 -0.02 1.43 16 32 H 0.08 1.43 7.66 -2.39 -0.02 1.41 16 33 H 0.16 2.65 6.30 -2.91 -0.02 2.63 16 34 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 36 H 0.16 6.28 8.06 -2.91 -0.02 6.26 16 37 H 0.29 13.52 8.29 -92.71 -0.77 12.76 16 38 H 0.14 6.35 7.77 -2.91 -0.02 6.33 16 Total: -1.00 -68.33 344.44 4.42 -63.91 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 1.08 Total: 22.05 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 5.42 Total: -4.26 kcal Atomic # 7 Polarization: -104.82 SS G_CDS: -3.26 Total: -108.07 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.78 Total: -11.70 kcal Atomic # 14 Polarization: 37.80 SS G_CDS: 2.03 Total: 39.82 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -0.08 Total: -1.74 kcal Total: -68.33 4.42 -63.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236452106.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.842 kcal (2) G-P(sol) polarization free energy of solvation -68.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds