Wall clock time and date at job start Tue Mar 31 2020 12:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47106 * 2 1 4 4 C 1.35542 * 116.99978 * 180.02562 * 3 2 1 5 5 N 1.32156 * 119.77711 * 0.02562 * 4 3 2 6 6 C 1.31961 * 121.80712 * 179.67817 * 5 4 3 7 7 C 1.38434 * 121.15332 * 0.59639 * 6 5 4 8 8 Cl 1.73595 * 120.28884 * 179.69703 * 7 6 5 9 9 C 1.38494 * 119.42500 * 359.41735 * 7 6 5 10 10 C 1.39908 * 118.34098 * 0.27631 * 9 7 6 11 11 C 1.47787 * 120.58241 * 179.97438 * 10 9 7 12 12 C 1.39986 * 119.46069 * 0.02562 * 11 10 9 13 13 C 1.36544 * 119.46223 * 179.97438 * 12 11 10 14 14 C 1.41334 * 118.42652 * 0.02562 * 13 12 11 15 15 C 1.41020 * 120.55111 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00471 * 154.60014 * 15 14 13 17 17 C 1.40008 * 119.99836 * 334.60131 * 15 14 13 18 18 N 1.30802 * 119.99929 * 343.61180 * 17 15 14 19 19 Si 1.86799 * 119.99812 * 163.61764 * 17 15 14 20 20 H 1.48501 * 109.47343 * 89.99973 * 19 17 15 21 21 H 1.48504 * 109.47016 * 210.00011 * 19 17 15 22 22 H 1.48499 * 109.47484 * 329.99656 * 19 17 15 23 23 C 1.40955 * 118.90355 * 359.97438 * 14 13 12 24 24 C 1.50703 * 119.79544 * 179.97438 * 23 14 13 25 25 N 1.31254 * 120.40863 * 359.73981 * 23 14 13 26 26 H 1.08993 * 109.47515 * 59.99855 * 1 2 3 27 27 H 1.09001 * 109.47411 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46853 * 299.99383 * 1 2 3 29 29 H 1.09002 * 109.46741 * 240.00093 * 2 1 3 30 30 H 1.08998 * 109.47346 * 120.00563 * 2 1 3 31 31 H 1.07994 * 119.42126 * 180.29141 * 6 5 4 32 32 H 1.08004 * 120.82814 * 180.26438 * 9 7 6 33 33 H 1.07994 * 120.26671 * 0.02562 * 12 11 10 34 34 H 1.08008 * 120.79060 * 179.97438 * 13 12 11 35 35 H 0.97000 * 120.00252 * 180.02562 * 18 17 15 36 36 H 1.09004 * 109.46971 * 89.99695 * 24 23 14 37 37 H 1.08998 * 109.47165 * 209.99695 * 24 23 14 38 38 H 1.08999 * 109.47307 * 329.99773 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3501 1.5249 -0.0005 5 7 4.1510 0.4737 -0.0015 6 6 5.4645 0.6001 -0.0084 7 6 6.0639 1.8480 -0.0025 8 17 7.7942 1.9882 -0.0038 9 6 5.2712 2.9836 -0.0015 10 6 3.8813 2.8233 -0.0006 11 6 2.9886 4.0011 0.0011 12 6 3.5441 5.2860 0.0012 13 6 2.7194 6.3743 0.0022 14 6 1.3224 6.1597 0.0037 15 6 0.4296 7.2513 0.0043 16 1 -0.5667 7.1343 -0.3959 17 6 0.8347 8.4868 0.5235 18 7 1.8942 8.5595 1.2871 19 14 -0.1379 10.0312 0.1259 20 1 -1.1951 10.2279 1.1501 21 1 0.7737 11.2035 0.1240 22 1 -0.7656 9.8901 -1.2125 23 6 0.8364 4.8366 0.0035 24 6 -0.6494 4.5847 0.0057 25 7 1.6698 3.8227 -0.0031 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 6.0827 -0.2854 -0.0138 32 1 5.7149 3.9683 -0.0013 33 1 4.6163 5.4155 -0.0004 34 1 3.1249 7.3753 0.0027 35 1 2.1748 9.4154 1.6472 36 1 -1.0093 4.5248 -1.0215 37 1 -0.8581 3.6461 0.5191 38 1 -1.1557 5.4010 0.5209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236496043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:58 Heat of formation + Delta-G solvation = 8.680756 kcal Electronic energy + Delta-G solvation = -23684.383780 eV Core-core repulsion = 20131.457550 eV Total energy + Delta-G solvation = -3552.926230 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.27407 -38.45348 -37.63744 -36.24332 -34.50117 -32.99156 -31.68941 -31.16146 -30.58015 -29.18557 -27.05380 -25.46278 -24.03222 -22.90847 -22.00771 -20.99658 -20.16198 -18.11007 -17.54040 -16.72918 -16.17091 -15.85758 -15.54209 -14.82511 -14.49713 -14.00355 -13.94589 -13.60218 -13.20955 -13.10560 -12.81388 -12.50700 -12.32410 -12.30323 -11.75944 -11.74960 -11.65554 -11.51908 -11.32571 -11.26935 -11.14474 -11.03299 -10.94307 -10.75514 -10.30359 -9.93068 -9.73332 -9.43458 -9.35791 -8.38053 -8.18070 -8.02723 -7.28429 -7.02847 -4.61033 1.15727 1.45318 2.26593 2.55966 2.87667 2.90379 2.94619 3.09899 3.50850 3.67585 3.99702 4.50113 4.56053 5.04015 5.10629 5.25641 5.27577 5.41490 5.49652 5.62272 5.71395 5.84953 5.97993 6.03272 6.10165 6.23242 6.30683 6.32489 6.41021 6.61148 6.64017 6.71424 6.78024 6.81938 7.02575 7.23205 7.55398 7.69391 7.75440 7.79102 8.13381 8.23640 8.43175 8.54582 9.56368 9.79783 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013474 B = 0.004095 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.636003 B = 6836.456918 C = 8818.940439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.060 3.940 3 O -0.250 6.250 4 C 0.325 3.675 5 N -0.529 5.529 6 C 0.115 3.885 7 C -0.115 4.115 8 Cl -0.073 7.073 9 C -0.065 4.065 10 C -0.027 4.027 11 C -0.005 4.005 12 C -0.122 4.122 13 C -0.144 4.144 14 C 0.076 3.924 15 C -0.424 4.424 16 H 0.091 0.909 17 C 0.071 3.929 18 N -0.772 5.772 19 Si 0.915 3.085 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.257 1.257 23 C 0.009 3.991 24 C -0.070 4.070 25 N -0.415 5.415 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.157 0.843 32 H 0.147 0.853 33 H 0.100 0.900 34 H 0.127 0.873 35 H 0.288 0.712 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.732 -8.031 -1.587 8.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.154 6.154 4 C 0.143 3.857 5 N -0.254 5.254 6 C -0.041 4.041 7 C -0.145 4.145 8 Cl -0.045 7.045 9 C -0.092 4.092 10 C -0.031 4.031 11 C -0.139 4.139 12 C -0.142 4.142 13 C -0.168 4.168 14 C 0.071 3.929 15 C -0.452 4.452 16 H 0.109 0.891 17 C -0.150 4.150 18 N -0.395 5.395 19 Si 0.738 3.262 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.180 1.180 23 C -0.138 4.138 24 C -0.127 4.127 25 N -0.123 5.123 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.174 0.826 32 H 0.164 0.836 33 H 0.118 0.882 34 H 0.144 0.856 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.105 -9.331 -1.437 9.673 hybrid contribution 0.835 2.265 -0.019 2.414 sum 2.940 -7.066 -1.456 7.791 Atomic orbital electron populations 1.21728 0.93299 1.01767 1.03697 1.22549 0.94934 0.82746 1.01387 1.86703 1.15083 1.27593 1.86056 1.20042 0.84644 0.88759 0.92227 1.67398 1.05209 1.32873 1.19919 1.22071 0.89362 0.95250 0.97420 1.21561 0.84944 0.95830 1.12117 1.98331 1.10451 1.98374 1.97363 1.21280 0.91251 0.98439 0.98186 1.18707 0.91697 0.91084 1.01601 1.18284 0.89411 0.89241 1.16968 1.21235 0.98610 0.93205 1.01197 1.21256 0.93232 0.97974 1.04360 1.18474 0.93015 0.92816 0.88630 1.19747 1.00259 0.93354 1.31874 0.89146 1.26127 0.95028 1.01349 0.92523 1.69782 1.21175 1.28286 1.20268 0.86182 0.80040 0.79448 0.80541 1.19030 1.19770 1.18019 1.21037 0.94656 0.88398 1.09692 1.20237 0.91301 1.00859 1.00322 1.66880 1.02311 1.35313 1.07802 0.91597 0.91206 0.91591 0.92476 0.92465 0.82555 0.83558 0.88248 0.85575 0.90084 0.93389 0.93027 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 10.28 37.16 0.38 -1.50 16 2 C 0.06 0.91 6.03 37.16 0.22 1.13 16 3 O -0.25 -4.90 7.96 -18.32 -0.15 -5.05 16 4 C 0.32 6.36 7.51 -16.64 -0.12 6.23 16 5 N -0.53 -9.18 9.21 -12.93 -0.12 -9.30 16 6 C 0.11 1.74 10.97 -17.42 -0.19 1.54 16 7 C -0.12 -1.77 6.33 -39.42 -0.25 -2.02 16 8 Cl -0.07 -0.96 28.98 -51.86 -1.50 -2.46 16 9 C -0.07 -1.13 9.32 -38.86 -0.36 -1.50 16 10 C -0.03 -0.54 5.91 -104.60 -0.62 -1.16 16 11 C -0.01 -0.12 6.74 -82.76 -0.56 -0.68 16 12 C -0.12 -2.76 9.39 -39.54 -0.37 -3.13 16 13 C -0.14 -3.50 8.73 -39.02 -0.34 -3.84 16 14 C 0.08 1.88 5.58 -106.64 -0.59 1.29 16 15 C -0.42 -10.06 8.13 -37.87 -0.31 -10.37 16 16 H 0.09 2.01 6.87 -52.49 -0.36 1.65 16 17 C 0.07 1.60 5.18 -17.33 -0.09 1.51 16 18 N -0.77 -18.06 10.96 55.55 0.61 -17.45 16 19 Si 0.91 16.70 29.59 -169.99 -5.03 11.67 16 20 H -0.27 -4.80 7.11 56.52 0.40 -4.39 16 21 H -0.27 -4.91 7.11 56.52 0.40 -4.50 16 22 H -0.26 -4.66 7.11 56.52 0.40 -4.25 16 23 C 0.01 0.23 6.86 -81.81 -0.56 -0.34 16 24 C -0.07 -1.40 9.57 36.01 0.34 -1.05 16 25 N -0.42 -9.96 8.05 -5.41 -0.04 -10.01 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.83 8.10 -51.93 -0.42 0.40 16 30 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 31 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16 32 H 0.15 2.35 6.27 -52.48 -0.33 2.02 16 33 H 0.10 1.96 6.21 -52.49 -0.33 1.63 16 34 H 0.13 3.09 6.27 -52.48 -0.33 2.77 16 35 H 0.29 6.08 8.30 -40.82 -0.34 5.74 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.06 1.27 6.77 -51.93 -0.35 0.92 16 LS Contribution 338.24 15.07 5.10 5.10 Total: -1.00 -26.60 338.24 -8.76 -35.37 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -4.21 Total: 6.02 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -3.42 Total: -13.87 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.45 Total: -36.77 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.15 Total: -5.05 kcal Atomic # 14 Polarization: 16.70 SS G_CDS: -5.03 Total: 11.67 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -26.60 -8.76 -35.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236496043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.046 kcal (2) G-P(sol) polarization free energy of solvation -26.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds