Wall clock time and date at job start Tue Mar 31 2020 12:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42900 * 109.47106 * 2 1 4 4 C 1.35542 * 116.99978 * 180.02562 * 3 2 1 5 5 N 1.32156 * 119.77711 * 0.02562 * 4 3 2 6 6 C 1.31961 * 121.80712 * 179.67817 * 5 4 3 7 7 C 1.38434 * 121.15332 * 0.59639 * 6 5 4 8 8 Cl 1.73595 * 120.28884 * 179.69703 * 7 6 5 9 9 C 1.38494 * 119.42500 * 359.41735 * 7 6 5 10 10 C 1.39908 * 118.34098 * 0.27631 * 9 7 6 11 11 C 1.47787 * 120.58241 * 179.97438 * 10 9 7 12 12 C 1.39986 * 119.46069 * 0.02562 * 11 10 9 13 13 C 1.36544 * 119.46223 * 179.97438 * 12 11 10 14 14 C 1.41334 * 118.42652 * 0.02562 * 13 12 11 15 15 C 1.41020 * 120.55111 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00471 * 154.60014 * 15 14 13 17 17 C 1.40008 * 119.99836 * 334.60131 * 15 14 13 18 18 N 1.30802 * 119.99929 * 343.61180 * 17 15 14 19 19 Si 1.86799 * 119.99812 * 163.61764 * 17 15 14 20 20 H 1.48501 * 109.47343 * 89.99973 * 19 17 15 21 21 H 1.48504 * 109.47016 * 210.00011 * 19 17 15 22 22 H 1.48499 * 109.47484 * 329.99656 * 19 17 15 23 23 C 1.40955 * 118.90355 * 359.97438 * 14 13 12 24 24 C 1.50703 * 119.79544 * 179.97438 * 23 14 13 25 25 N 1.31254 * 120.40863 * 359.73981 * 23 14 13 26 26 H 1.08993 * 109.47515 * 59.99855 * 1 2 3 27 27 H 1.09001 * 109.47411 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46853 * 299.99383 * 1 2 3 29 29 H 1.09002 * 109.46741 * 240.00093 * 2 1 3 30 30 H 1.08998 * 109.47346 * 120.00563 * 2 1 3 31 31 H 1.07994 * 119.42126 * 180.29141 * 6 5 4 32 32 H 1.08004 * 120.82814 * 180.26438 * 9 7 6 33 33 H 1.07994 * 120.26671 * 0.02562 * 12 11 10 34 34 H 1.08008 * 120.79060 * 179.97438 * 13 12 11 35 35 H 0.97000 * 120.00252 * 180.02562 * 18 17 15 36 36 H 1.09004 * 109.46971 * 89.99695 * 24 23 14 37 37 H 1.08998 * 109.47165 * 209.99695 * 24 23 14 38 38 H 1.08999 * 109.47307 * 329.99773 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3501 1.5249 -0.0005 5 7 4.1510 0.4737 -0.0015 6 6 5.4645 0.6001 -0.0084 7 6 6.0639 1.8480 -0.0025 8 17 7.7942 1.9882 -0.0038 9 6 5.2712 2.9836 -0.0015 10 6 3.8813 2.8233 -0.0006 11 6 2.9886 4.0011 0.0011 12 6 3.5441 5.2860 0.0012 13 6 2.7194 6.3743 0.0022 14 6 1.3224 6.1597 0.0037 15 6 0.4296 7.2513 0.0043 16 1 -0.5667 7.1343 -0.3959 17 6 0.8347 8.4868 0.5235 18 7 1.8942 8.5595 1.2871 19 14 -0.1379 10.0312 0.1259 20 1 -1.1951 10.2279 1.1501 21 1 0.7737 11.2035 0.1240 22 1 -0.7656 9.8901 -1.2125 23 6 0.8364 4.8366 0.0035 24 6 -0.6494 4.5847 0.0057 25 7 1.6698 3.8227 -0.0031 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 6.0827 -0.2854 -0.0138 32 1 5.7149 3.9683 -0.0013 33 1 4.6163 5.4155 -0.0004 34 1 3.1249 7.3753 0.0027 35 1 2.1748 9.4154 1.6472 36 1 -1.0093 4.5248 -1.0215 37 1 -0.8581 3.6461 0.5191 38 1 -1.1557 5.4010 0.5209 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236496043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:57 Heat of formation + Delta-G solvation = -5.221775 kcal Electronic energy + Delta-G solvation = -23684.986639 eV Core-core repulsion = 20131.457550 eV Total energy + Delta-G solvation = -3553.529089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.67733 -40.15996 -38.97221 -37.42606 -36.17845 -34.55941 -32.97046 -32.77305 -32.13731 -30.57237 -28.75088 -27.07212 -25.38547 -24.43207 -23.26871 -22.63732 -21.83925 -19.46710 -19.26902 -18.18895 -17.56030 -17.16517 -17.11743 -16.40615 -16.03677 -15.58457 -15.26077 -14.91839 -14.76090 -14.63354 -14.30989 -13.78947 -13.68763 -13.48695 -13.36168 -13.33140 -13.19727 -13.04090 -12.79826 -12.60913 -12.58292 -12.35600 -12.21049 -12.16662 -11.62741 -11.53087 -11.31310 -10.89507 -10.78250 -10.14078 -9.79698 -9.66521 -8.92183 -8.69120 -6.38790 -0.26319 0.08938 0.91381 1.04697 1.15178 1.40233 1.51671 1.57628 2.15952 2.21780 2.52256 2.86262 3.26284 3.62605 3.72259 3.75202 3.88853 4.14863 4.21972 4.34047 4.41781 4.47170 4.50064 4.60867 4.79734 4.88409 4.91588 5.00760 5.01452 5.02641 5.04693 5.13941 5.25513 5.29810 5.32424 5.52771 5.80040 5.95578 5.99908 6.41339 6.46923 6.68968 6.75596 6.79470 7.78780 8.16348 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013474 B = 0.004095 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.636003 B = 6836.456918 C = 8818.940439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.055 3.945 3 O -0.277 6.277 4 C 0.315 3.685 5 N -0.531 5.531 6 C 0.134 3.866 7 C -0.117 4.117 8 Cl -0.045 7.045 9 C -0.052 4.052 10 C -0.068 4.068 11 C -0.010 4.010 12 C -0.130 4.130 13 C -0.164 4.164 14 C 0.046 3.954 15 C -0.453 4.453 16 H 0.096 0.904 17 C 0.035 3.965 18 N -0.807 5.807 19 Si 0.987 3.013 20 H -0.259 1.259 21 H -0.267 1.267 22 H -0.254 1.254 23 C -0.015 4.015 24 C -0.061 4.061 25 N -0.429 5.429 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.197 0.803 32 H 0.155 0.845 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.295 0.705 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.660 -9.330 -1.833 10.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.020 4.020 3 O -0.182 6.182 4 C 0.135 3.865 5 N -0.256 5.256 6 C -0.023 4.023 7 C -0.146 4.146 8 Cl -0.017 7.017 9 C -0.078 4.078 10 C -0.072 4.072 11 C -0.145 4.145 12 C -0.150 4.150 13 C -0.188 4.188 14 C 0.042 3.958 15 C -0.481 4.481 16 H 0.114 0.886 17 C -0.183 4.183 18 N -0.431 5.431 19 Si 0.806 3.194 20 H -0.184 1.184 21 H -0.192 1.192 22 H -0.178 1.178 23 C -0.161 4.161 24 C -0.118 4.118 25 N -0.137 5.137 26 H 0.076 0.924 27 H 0.122 0.878 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.213 0.787 32 H 0.173 0.827 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.014 -10.645 -1.682 11.191 hybrid contribution 0.822 2.381 0.065 2.520 sum 3.836 -8.264 -1.617 9.253 Atomic orbital electron populations 1.21743 0.91657 1.03684 1.02738 1.22808 0.96240 0.81140 1.01839 1.86670 1.15400 1.30096 1.86003 1.20146 0.85058 0.89010 0.92313 1.67512 1.06028 1.31911 1.20163 1.22799 0.88921 0.96565 0.93981 1.21593 0.86409 0.95263 1.11342 1.98349 1.07806 1.98323 1.97184 1.21448 0.90410 0.99718 0.96265 1.18735 0.92564 0.90674 1.05249 1.18806 0.89718 0.90495 1.15459 1.21470 0.99752 0.92841 1.00904 1.21299 0.93733 0.98049 1.05763 1.18808 0.93587 0.93770 0.89679 1.19968 1.00630 0.94195 1.33274 0.88600 1.26947 0.95836 1.03864 0.91659 1.69827 1.22691 1.29393 1.21154 0.85115 0.78567 0.75413 0.80258 1.18375 1.19153 1.17791 1.21593 0.96340 0.88355 1.09812 1.20198 0.89268 1.01159 1.01176 1.66988 1.02896 1.35323 1.08497 0.92445 0.87797 0.92588 0.91847 0.91976 0.78663 0.82714 0.85875 0.86545 0.89393 0.92174 0.92341 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 10.28 71.98 0.74 -2.71 16 2 C 0.06 1.62 6.03 71.98 0.43 2.06 16 3 O -0.28 -10.89 7.96 -88.47 -0.70 -11.59 16 4 C 0.31 12.17 7.51 85.14 0.64 12.81 16 5 N -0.53 -17.36 9.21 -307.82 -2.83 -20.19 16 6 C 0.13 3.61 10.97 84.72 0.93 4.54 16 7 C -0.12 -3.26 6.33 22.38 0.14 -3.12 16 8 Cl -0.05 -1.03 28.98 -2.72 -0.08 -1.11 16 9 C -0.05 -1.74 9.32 22.74 0.21 -1.52 16 10 C -0.07 -2.76 5.91 -19.85 -0.12 -2.88 16 11 C -0.01 -0.47 6.74 41.90 0.28 -0.19 16 12 C -0.13 -6.03 9.39 22.30 0.21 -5.82 16 13 C -0.16 -8.33 8.73 22.64 0.20 -8.13 16 14 C 0.05 2.40 5.58 -21.17 -0.12 2.29 16 15 C -0.45 -22.20 8.13 23.38 0.19 -22.01 16 16 H 0.10 4.40 6.87 -2.91 -0.02 4.38 16 17 C 0.04 1.60 5.18 85.28 0.44 2.05 16 18 N -0.81 -38.89 10.96 21.84 0.24 -38.65 16 19 Si 0.99 34.43 29.59 68.60 2.03 36.46 16 20 H -0.26 -8.72 7.11 99.48 0.71 -8.02 16 21 H -0.27 -8.96 7.11 99.48 0.71 -8.25 16 22 H -0.25 -8.69 7.11 99.48 0.71 -7.98 16 23 C -0.01 -0.74 6.86 43.31 0.30 -0.45 16 24 C -0.06 -2.49 9.57 71.24 0.68 -1.81 16 25 N -0.43 -21.23 8.05 -171.02 -1.38 -22.60 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.10 1.79 8.14 -2.39 -0.02 1.78 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.06 1.75 8.10 -2.39 -0.02 1.74 16 30 H 0.06 1.74 8.11 -2.39 -0.02 1.72 16 31 H 0.20 3.70 8.06 -2.91 -0.02 3.68 16 32 H 0.16 4.76 6.27 -2.91 -0.02 4.74 16 33 H 0.12 4.90 6.21 -2.91 -0.02 4.89 16 34 H 0.12 6.02 6.27 -2.91 -0.02 6.00 16 35 H 0.30 12.74 8.30 -92.71 -0.77 11.97 16 36 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.07 2.69 6.77 -2.39 -0.02 2.67 16 Total: -1.00 -59.42 338.24 3.54 -55.88 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 1.10 Total: 26.71 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 5.16 Total: -24.90 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -3.97 Total: -81.44 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -0.70 Total: -11.59 kcal Atomic # 14 Polarization: 34.43 SS G_CDS: 2.03 Total: 36.46 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -59.42 3.54 -55.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236496043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.658 kcal (2) G-P(sol) polarization free energy of solvation -59.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds