Wall clock time and date at job start Tue Mar 31 2020 12:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35679 * 117.00013 * 2 1 4 4 C 1.37957 * 120.19649 * 0.28708 * 3 2 1 5 5 C 1.39640 * 119.93390 * 180.25008 * 4 3 2 6 6 C 1.47995 * 119.83945 * 179.71208 * 5 4 3 7 7 C 1.39641 * 120.08648 * 0.02562 * 6 5 4 8 8 C 1.37980 * 120.03186 * 179.97438 * 7 6 5 9 9 C 1.38431 * 120.20133 * 0.02562 * 8 7 6 10 10 F 1.35100 * 119.91811 * 179.97438 * 9 8 7 11 11 C 1.39312 * 120.16628 * 359.97438 * 9 8 7 12 12 S 1.76202 * 120.01681 * 180.02562 * 11 9 8 13 13 C 1.81404 * 102.99859 * 180.02562 * 12 11 9 14 14 C 1.38586 * 119.96917 * 359.72505 * 11 9 8 15 15 C 1.40091 * 120.32052 * 359.73911 * 5 4 3 16 16 C 1.36104 * 120.39192 * 359.97438 * 15 5 4 17 17 C 1.40910 * 120.05858 * 0.02562 * 16 15 5 18 18 C 1.40835 * 120.15693 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99981 * 154.55565 * 18 17 16 20 20 C 1.39978 * 119.99855 * 334.54786 * 18 17 16 21 21 N 1.30841 * 120.00571 * 334.52622 * 20 18 17 22 22 Si 1.86807 * 119.99474 * 154.52255 * 20 18 17 23 23 H 1.48506 * 109.46945 * 180.02562 * 22 20 18 24 24 H 1.48499 * 109.47223 * 300.00138 * 22 20 18 25 25 H 1.48500 * 109.47329 * 60.00324 * 22 20 18 26 26 H 1.08996 * 109.47049 * 299.99483 * 1 2 3 27 27 H 1.09006 * 109.47318 * 59.99477 * 1 2 3 28 28 H 1.09004 * 109.47593 * 179.97438 * 1 2 3 29 29 H 1.08003 * 120.03123 * 359.96665 * 4 3 2 30 30 H 1.08004 * 119.98717 * 359.97438 * 7 6 5 31 31 H 1.08003 * 119.89774 * 179.97438 * 8 7 6 32 32 H 1.09000 * 109.46867 * 180.02562 * 13 12 11 33 33 H 1.08996 * 109.46787 * 299.99384 * 13 12 11 34 34 H 1.08998 * 109.47229 * 60.00012 * 13 12 11 35 35 H 1.07997 * 120.10285 * 180.26688 * 14 11 9 36 36 H 1.07999 * 119.80712 * 179.97438 * 15 5 4 37 37 H 1.08004 * 119.97017 * 180.02562 * 16 15 5 38 38 H 0.97008 * 119.99628 * 354.15225 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2975 2.3685 0.0060 5 6 1.9372 3.6098 0.0007 6 6 1.1333 4.8524 0.0006 7 6 -0.2614 4.7839 0.0065 8 6 -1.0098 5.9431 0.0070 9 6 -0.3823 7.1770 0.0012 10 9 -1.1206 8.3084 0.0012 11 6 1.0086 7.2551 -0.0047 12 16 1.8032 8.8277 -0.0113 13 6 3.5648 8.3948 -0.0183 14 6 1.7671 6.0952 0.0011 15 6 3.3361 3.6845 -0.0052 16 6 4.0863 2.5489 -0.0053 17 6 3.4578 1.2878 0.0000 18 6 4.2321 0.1114 -0.0006 19 1 3.8251 -0.8032 0.4049 20 6 5.5290 0.1274 -0.5269 21 7 5.8563 1.0122 -1.4335 22 14 6.7926 -1.1145 0.0653 23 1 8.0789 -0.8873 -0.6414 24 1 6.9967 -0.9542 1.5274 25 1 6.3071 -2.4887 -0.2190 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.2188 2.3162 0.0101 30 1 -0.7547 3.8230 0.0106 31 1 -2.0883 5.8876 0.0110 32 1 4.1628 9.3061 -0.0223 33 1 3.7990 7.8110 0.8718 34 1 3.7911 7.8074 -0.9081 35 1 2.8455 6.1532 0.0010 36 1 3.8221 4.6489 -0.0097 37 1 5.1643 2.6145 -0.0094 38 1 5.1798 1.6013 -1.8028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238963071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:59 Heat of formation + Delta-G solvation = -48.021982 kcal Electronic energy + Delta-G solvation = -23276.186725 eV Core-core repulsion = 19702.925425 eV Total energy + Delta-G solvation = -3573.261300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.60312 -39.34463 -38.32357 -36.39370 -34.29859 -31.45069 -31.22977 -29.22250 -28.89077 -28.50824 -26.66041 -25.09280 -23.12668 -22.50487 -20.68333 -20.46130 -18.43238 -17.80780 -17.02838 -16.25423 -16.16137 -15.40143 -15.06254 -14.93306 -14.83035 -14.56881 -14.15488 -14.07123 -13.73225 -13.63660 -13.14801 -13.12599 -12.89865 -12.53611 -12.49102 -12.08998 -11.95246 -11.60839 -11.30563 -11.14389 -11.07271 -10.80793 -10.53770 -10.38157 -10.22631 -10.01988 -9.75152 -9.63031 -9.26446 -8.71643 -7.70303 -7.60020 -7.34273 -7.13305 -4.53973 1.13512 1.36313 1.51977 2.38950 2.53339 2.69466 3.03612 3.10208 3.24096 3.82727 3.85797 4.25987 4.42542 4.46522 4.91148 5.01106 5.04052 5.22259 5.23804 5.40328 5.44611 5.58540 5.63840 5.64725 5.74395 5.81372 5.93204 6.01961 6.16371 6.27152 6.39633 6.50243 6.67251 6.81957 6.92189 7.08230 7.19323 7.42009 7.49960 7.68479 7.79837 7.95029 8.10785 8.50375 8.70512 9.73953 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.016319 B = 0.003612 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.338035 B = 7749.520307 C = 9346.732363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.312 6.312 3 C 0.009 3.991 4 C -0.139 4.139 5 C -0.195 4.195 6 C 0.037 3.963 7 C -0.125 4.125 8 C -0.121 4.121 9 C 0.065 3.935 10 F -0.141 7.141 11 C -0.104 4.104 12 S -0.115 6.115 13 C -0.146 4.146 14 C -0.135 4.135 15 C -0.068 4.068 16 C -0.214 4.214 17 C 0.092 3.908 18 C -0.471 4.471 19 H 0.088 0.912 20 C 0.033 3.967 21 N -0.775 5.775 22 Si 1.067 2.933 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.272 1.272 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.290 6.096 1.866 8.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.226 6.226 3 C -0.035 4.035 4 C -0.159 4.159 5 C -0.197 4.197 6 C 0.035 3.965 7 C -0.146 4.146 8 C -0.141 4.141 9 C 0.041 3.959 10 F -0.120 7.120 11 C -0.218 4.218 12 S 0.126 5.874 13 C -0.314 4.314 14 C -0.159 4.159 15 C -0.086 4.086 16 C -0.234 4.234 17 C 0.088 3.912 18 C -0.497 4.497 19 H 0.106 0.894 20 C -0.191 4.191 21 N -0.396 5.396 22 Si 0.889 3.111 23 H -0.196 1.196 24 H -0.197 1.197 25 H -0.197 1.197 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.122 0.878 30 H 0.146 0.854 31 H 0.150 0.850 32 H 0.125 0.875 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.149 0.851 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.971 6.723 1.654 7.982 hybrid contribution -1.607 -0.379 0.103 1.655 sum -5.579 6.344 1.758 8.629 Atomic orbital electron populations 1.22776 0.81354 1.02099 1.00060 1.85970 1.18519 1.27861 1.90282 1.18950 0.92047 0.82846 1.09680 1.20680 0.97542 0.91855 1.05773 1.17587 0.92107 0.89862 1.20108 1.18846 0.92439 0.92418 0.92806 1.21043 0.93231 0.97527 1.02752 1.20851 1.00228 0.90612 1.02431 1.16953 0.86916 0.82383 1.09679 1.91445 1.76582 1.49540 1.94449 1.21583 0.94668 0.97632 1.07874 1.85377 1.02384 1.06755 1.92900 1.23697 0.94984 1.06566 1.06163 1.21072 0.99523 0.90341 1.04942 1.20346 0.92540 0.96947 0.98810 1.20568 0.98892 0.91191 1.12704 1.17209 0.88250 0.93768 0.91972 1.20699 0.99223 0.97545 1.32208 0.89420 1.27261 0.99235 0.99368 0.93189 1.70473 1.40074 1.13288 1.15788 0.83596 0.75218 0.74877 0.77363 1.19572 1.19664 1.19744 0.94042 0.94004 0.89735 0.87794 0.85359 0.85037 0.87457 0.89526 0.89485 0.85058 0.88859 0.86800 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.81 101.05 0.99 1.51 16 2 O -0.31 -6.75 9.78 -18.74 -0.18 -6.94 16 3 C 0.01 0.20 6.71 -38.44 -0.26 -0.06 16 4 C -0.14 -2.90 8.40 -39.16 -0.33 -3.23 16 5 C -0.20 -4.03 5.89 -104.68 -0.62 -4.64 16 6 C 0.04 0.68 5.88 -104.90 -0.62 0.06 16 7 C -0.13 -2.03 9.42 -39.15 -0.37 -2.40 16 8 C -0.12 -1.81 10.00 -39.60 -0.40 -2.21 16 9 C 0.07 1.07 7.28 -39.11 -0.28 0.78 16 10 F -0.14 -2.30 16.74 2.25 0.04 -2.27 16 11 C -0.10 -1.71 6.11 -39.05 -0.24 -1.95 16 12 S -0.12 -1.63 22.16 -107.50 -2.38 -4.01 16 13 C -0.15 -1.59 9.15 101.05 0.92 -0.66 16 14 C -0.14 -2.29 8.74 -38.98 -0.34 -2.63 16 15 C -0.07 -1.44 9.34 -39.65 -0.37 -1.81 16 16 C -0.21 -5.01 7.87 -39.34 -0.31 -5.32 16 17 C 0.09 2.27 5.31 -106.66 -0.57 1.70 16 18 C -0.47 -11.69 8.62 -37.95 -0.33 -12.02 16 19 H 0.09 2.18 7.71 -52.48 -0.40 1.77 16 20 C 0.03 0.78 4.93 -17.32 -0.09 0.70 16 21 N -0.77 -18.92 12.30 55.55 0.68 -18.24 16 22 Si 1.07 19.85 30.00 -169.99 -5.10 14.75 16 23 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 24 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 25 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 26 H 0.04 0.60 7.65 -51.93 -0.40 0.20 16 27 H 0.04 0.62 7.67 -51.93 -0.40 0.22 16 28 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.10 1.87 4.40 -52.48 -0.23 1.64 16 30 H 0.13 1.88 6.17 -52.48 -0.32 1.55 16 31 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 32 H 0.11 0.92 8.14 -51.92 -0.42 0.49 16 33 H 0.09 0.93 7.73 -51.93 -0.40 0.53 16 34 H 0.09 0.95 7.76 -51.93 -0.40 0.54 16 35 H 0.13 2.07 3.98 -52.49 -0.21 1.86 16 36 H 0.09 1.75 6.16 -52.49 -0.32 1.42 16 37 H 0.11 2.71 6.47 -52.48 -0.34 2.37 16 38 H 0.30 7.61 6.69 -40.82 -0.27 7.33 16 LS Contribution 332.52 15.07 5.01 5.01 Total: -1.00 -26.70 332.52 -8.89 -35.59 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -3.77 Total: 8.27 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: -3.19 Total: -32.17 kcal Atomic # 7 Polarization: -18.92 SS G_CDS: 0.68 Total: -18.24 kcal Atomic # 8 Polarization: -6.75 SS G_CDS: -0.18 Total: -6.94 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.10 Total: 14.75 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.38 Total: -4.01 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.70 -8.89 -35.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238963071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.431 kcal (2) G-P(sol) polarization free energy of solvation -26.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds