Wall clock time and date at job start Tue Mar 31 2020 12:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35679 * 117.00013 * 2 1 4 4 C 1.37957 * 120.19649 * 0.28708 * 3 2 1 5 5 C 1.39640 * 119.93390 * 180.25008 * 4 3 2 6 6 C 1.47995 * 119.83945 * 179.71208 * 5 4 3 7 7 C 1.39641 * 120.08648 * 0.02562 * 6 5 4 8 8 C 1.37980 * 120.03186 * 179.97438 * 7 6 5 9 9 C 1.38431 * 120.20133 * 0.02562 * 8 7 6 10 10 F 1.35100 * 119.91811 * 179.97438 * 9 8 7 11 11 C 1.39312 * 120.16628 * 359.97438 * 9 8 7 12 12 S 1.76202 * 120.01681 * 180.02562 * 11 9 8 13 13 C 1.81404 * 102.99859 * 180.02562 * 12 11 9 14 14 C 1.38586 * 119.96917 * 359.72505 * 11 9 8 15 15 C 1.40091 * 120.32052 * 359.73911 * 5 4 3 16 16 C 1.36104 * 120.39192 * 359.97438 * 15 5 4 17 17 C 1.40910 * 120.05858 * 0.02562 * 16 15 5 18 18 C 1.40835 * 120.15693 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99981 * 154.55565 * 18 17 16 20 20 C 1.39978 * 119.99855 * 334.54786 * 18 17 16 21 21 N 1.30841 * 120.00571 * 334.52622 * 20 18 17 22 22 Si 1.86807 * 119.99474 * 154.52255 * 20 18 17 23 23 H 1.48506 * 109.46945 * 180.02562 * 22 20 18 24 24 H 1.48499 * 109.47223 * 300.00138 * 22 20 18 25 25 H 1.48500 * 109.47329 * 60.00324 * 22 20 18 26 26 H 1.08996 * 109.47049 * 299.99483 * 1 2 3 27 27 H 1.09006 * 109.47318 * 59.99477 * 1 2 3 28 28 H 1.09004 * 109.47593 * 179.97438 * 1 2 3 29 29 H 1.08003 * 120.03123 * 359.96665 * 4 3 2 30 30 H 1.08004 * 119.98717 * 359.97438 * 7 6 5 31 31 H 1.08003 * 119.89774 * 179.97438 * 8 7 6 32 32 H 1.09000 * 109.46867 * 180.02562 * 13 12 11 33 33 H 1.08996 * 109.46787 * 299.99384 * 13 12 11 34 34 H 1.08998 * 109.47229 * 60.00012 * 13 12 11 35 35 H 1.07997 * 120.10285 * 180.26688 * 14 11 9 36 36 H 1.07999 * 119.80712 * 179.97438 * 15 5 4 37 37 H 1.08004 * 119.97017 * 180.02562 * 16 15 5 38 38 H 0.97008 * 119.99628 * 354.15225 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2975 2.3685 0.0060 5 6 1.9372 3.6098 0.0007 6 6 1.1333 4.8524 0.0006 7 6 -0.2614 4.7839 0.0065 8 6 -1.0098 5.9431 0.0070 9 6 -0.3823 7.1770 0.0012 10 9 -1.1206 8.3084 0.0012 11 6 1.0086 7.2551 -0.0047 12 16 1.8032 8.8277 -0.0113 13 6 3.5648 8.3948 -0.0183 14 6 1.7671 6.0952 0.0011 15 6 3.3361 3.6845 -0.0052 16 6 4.0863 2.5489 -0.0053 17 6 3.4578 1.2878 0.0000 18 6 4.2321 0.1114 -0.0006 19 1 3.8251 -0.8032 0.4049 20 6 5.5290 0.1274 -0.5269 21 7 5.8563 1.0122 -1.4335 22 14 6.7926 -1.1145 0.0653 23 1 8.0789 -0.8873 -0.6414 24 1 6.9967 -0.9542 1.5274 25 1 6.3071 -2.4887 -0.2190 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 0.2188 2.3162 0.0101 30 1 -0.7547 3.8230 0.0106 31 1 -2.0883 5.8876 0.0110 32 1 4.1628 9.3061 -0.0223 33 1 3.7990 7.8110 0.8718 34 1 3.7911 7.8074 -0.9081 35 1 2.8455 6.1532 0.0010 36 1 3.8221 4.6489 -0.0097 37 1 5.1643 2.6145 -0.0094 38 1 5.1798 1.6013 -1.8028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238963071.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:58 Heat of formation + Delta-G solvation = -59.352070 kcal Electronic energy + Delta-G solvation = -23276.678035 eV Core-core repulsion = 19702.925425 eV Total energy + Delta-G solvation = -3573.752610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.89853 -40.90591 -39.74673 -38.00795 -35.94653 -32.80737 -32.68584 -30.81947 -30.14192 -29.76401 -28.04339 -26.71784 -24.46801 -23.99166 -22.26327 -22.00117 -20.10690 -19.16053 -18.41249 -17.59599 -17.57068 -16.68730 -16.65281 -16.45614 -16.31470 -15.89290 -15.57319 -15.28460 -14.97627 -14.69111 -14.67731 -14.61569 -14.33072 -13.90764 -13.64416 -13.48940 -13.40370 -13.09245 -12.79313 -12.60946 -12.45311 -12.24612 -11.96094 -11.84278 -11.63865 -11.42348 -11.28057 -11.00302 -10.83649 -10.21503 -9.40581 -9.21962 -8.89216 -8.46826 -6.34151 -0.26723 0.08723 0.42465 0.91050 0.98500 1.33021 1.51494 1.62504 1.80697 2.30534 2.40390 2.78811 2.81312 3.18057 3.49792 3.68075 3.80266 4.03870 4.17473 4.19878 4.20229 4.24245 4.36982 4.39645 4.44211 4.56899 4.70782 4.77228 4.80708 4.86663 4.94163 5.02620 5.12651 5.23180 5.32231 5.45488 5.63999 5.71864 5.85705 5.96191 6.07822 6.23540 6.41907 6.77561 7.06053 7.95593 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.016319 B = 0.003612 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.338035 B = 7749.520307 C = 9346.732363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.339 6.339 3 C -0.004 4.004 4 C -0.144 4.144 5 C -0.176 4.176 6 C 0.008 3.992 7 C -0.117 4.117 8 C -0.114 4.114 9 C 0.065 3.935 10 F -0.140 7.140 11 C -0.117 4.117 12 S -0.126 6.126 13 C -0.141 4.141 14 C -0.132 4.132 15 C -0.082 4.082 16 C -0.222 4.222 17 C 0.059 3.941 18 C -0.519 4.519 19 H 0.073 0.927 20 C 0.005 3.995 21 N -0.803 5.803 22 Si 1.115 2.885 23 H -0.268 1.268 24 H -0.263 1.263 25 H -0.260 1.260 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.112 0.888 29 H 0.136 0.864 30 H 0.147 0.853 31 H 0.166 0.834 32 H 0.134 0.866 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.138 0.862 36 H 0.115 0.885 37 H 0.099 0.901 38 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.230 7.659 2.332 10.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.254 6.254 3 C -0.048 4.048 4 C -0.163 4.163 5 C -0.177 4.177 6 C 0.006 3.994 7 C -0.137 4.137 8 C -0.134 4.134 9 C 0.040 3.960 10 F -0.119 7.119 11 C -0.231 4.231 12 S 0.116 5.884 13 C -0.309 4.309 14 C -0.155 4.155 15 C -0.101 4.101 16 C -0.241 4.241 17 C 0.056 3.944 18 C -0.546 4.546 19 H 0.091 0.909 20 C -0.213 4.213 21 N -0.425 5.425 22 Si 0.932 3.068 23 H -0.193 1.193 24 H -0.187 1.187 25 H -0.184 1.184 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.130 0.870 29 H 0.153 0.847 30 H 0.165 0.835 31 H 0.183 0.817 32 H 0.152 0.848 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.156 0.844 36 H 0.133 0.867 37 H 0.117 0.883 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.943 8.305 2.124 10.431 hybrid contribution -1.383 -0.459 -0.011 1.457 sum -7.326 7.846 2.112 10.940 Atomic orbital electron populations 1.23135 0.78359 1.04477 1.01162 1.85928 1.21706 1.27551 1.90264 1.19147 0.91952 0.84155 1.09537 1.20997 0.99091 0.91081 1.05094 1.17971 0.92142 0.91112 1.16500 1.18858 0.93411 0.91680 0.95438 1.21265 0.92343 0.98892 1.01190 1.21165 1.01927 0.89442 1.00860 1.17283 0.87157 0.82946 1.08592 1.91455 1.76495 1.49638 1.94312 1.21794 0.95126 0.98501 1.07636 1.85425 1.04841 1.05614 1.92527 1.23820 0.92704 1.08016 1.06353 1.21165 1.00062 0.90210 1.04071 1.20590 0.93173 0.97216 0.99077 1.20543 0.98475 0.91833 1.13296 1.17572 0.89685 0.94262 0.92910 1.20669 1.00825 0.97377 1.35707 0.90919 1.28465 1.00583 1.00117 0.92119 1.70582 1.39330 1.15054 1.17568 0.83027 0.73115 0.73391 0.77300 1.19278 1.18716 1.18414 0.92619 0.92897 0.86979 0.84692 0.83539 0.81664 0.84783 0.89230 0.89357 0.84412 0.86668 0.88265 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 9.81 113.37 1.11 1.81 16 2 O -0.34 -14.86 9.78 -89.97 -0.88 -15.74 16 3 C 0.00 -0.17 6.71 23.01 0.15 -0.01 16 4 C -0.14 -5.82 8.40 22.54 0.19 -5.63 16 5 C -0.18 -7.05 5.89 -19.90 -0.12 -7.17 16 6 C 0.01 0.28 5.88 -20.04 -0.12 0.16 16 7 C -0.12 -3.34 9.42 22.55 0.21 -3.13 16 8 C -0.11 -2.94 10.00 22.25 0.22 -2.72 16 9 C 0.07 1.91 7.28 22.57 0.16 2.08 16 10 F -0.14 -4.13 16.74 44.97 0.75 -3.38 16 11 C -0.12 -3.53 6.11 22.61 0.14 -3.39 16 12 S -0.13 -3.23 22.16 -56.49 -1.25 -4.49 16 13 C -0.14 -2.70 9.15 113.37 1.04 -1.67 16 14 C -0.13 -4.15 8.74 22.66 0.20 -3.96 16 15 C -0.08 -3.51 9.34 22.22 0.21 -3.31 16 16 C -0.22 -10.86 7.87 22.43 0.18 -10.69 16 17 C 0.06 3.06 5.31 -21.18 -0.11 2.95 16 18 C -0.52 -27.43 8.62 23.33 0.20 -27.23 16 19 H 0.07 3.88 7.71 -2.91 -0.02 3.86 16 20 C 0.00 0.23 4.93 85.26 0.42 0.65 16 21 N -0.80 -41.59 12.30 21.83 0.27 -41.33 16 22 Si 1.11 41.63 30.00 68.60 2.06 43.69 16 23 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 24 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 25 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 26 H 0.06 1.48 7.65 -2.39 -0.02 1.46 16 27 H 0.05 1.44 7.67 -2.38 -0.02 1.42 16 28 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 29 H 0.14 4.47 4.40 -2.91 -0.01 4.46 16 30 H 0.15 3.62 6.17 -2.91 -0.02 3.60 16 31 H 0.17 3.15 8.06 -2.91 -0.02 3.12 16 32 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 1.70 7.73 -2.39 -0.02 1.69 16 34 H 0.09 1.71 7.76 -2.39 -0.02 1.69 16 35 H 0.14 4.08 3.98 -2.91 -0.01 4.07 16 36 H 0.12 4.27 6.16 -2.91 -0.02 4.25 16 37 H 0.10 5.04 6.47 -2.91 -0.02 5.03 16 38 H 0.29 15.42 6.69 -92.70 -0.62 14.80 16 Total: -1.00 -60.81 332.52 6.30 -54.52 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 1.26 Total: 27.98 kcal Atomic # 6 Polarization: -65.34 SS G_CDS: 4.09 Total: -61.26 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.27 Total: -41.33 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.88 Total: -15.74 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.75 Total: -3.38 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.06 Total: 43.69 kcal Atomic # 16 Polarization: -3.23 SS G_CDS: -1.25 Total: -4.49 kcal Total: -60.81 6.30 -54.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238963071.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.835 kcal (2) G-P(sol) polarization free energy of solvation -60.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds