Wall clock time and date at job start Tue Mar 31 2020 12:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35879 * 117.00225 * 2 1 4 4 C 1.39489 * 119.77308 * 0.02562 * 3 2 1 5 5 C 1.37917 * 120.61596 * 179.69687 * 4 3 2 6 6 C 1.39203 * 120.16891 * 0.56005 * 5 4 3 7 7 C 1.47793 * 120.22363 * 179.71887 * 6 5 4 8 8 C 1.39752 * 120.09276 * 129.98103 * 7 6 5 9 9 C 1.37951 * 120.02310 * 180.25316 * 8 7 6 10 10 C 1.38455 * 120.20654 * 359.49282 * 9 8 7 11 11 F 1.35102 * 119.91130 * 180.27810 * 10 9 8 12 12 C 1.39338 * 120.18281 * 0.25030 * 10 9 8 13 13 S 1.76209 * 120.00934 * 179.97438 * 12 10 9 14 14 C 1.81396 * 102.99596 * 180.02562 * 13 12 10 15 15 C 1.38550 * 119.98067 * 0.02562 * 12 10 9 16 16 C 1.41917 * 119.55049 * 359.44766 * 6 5 4 17 17 C 1.40872 * 120.30058 * 180.29429 * 16 6 5 18 18 H 1.07994 * 119.99959 * 332.94535 * 17 16 6 19 19 C 1.40031 * 119.99643 * 152.93736 * 17 16 6 20 20 N 1.30795 * 120.00223 * 344.45642 * 19 17 16 21 21 Si 1.86806 * 119.99555 * 164.45372 * 19 17 16 22 22 H 1.48495 * 109.47265 * 60.00407 * 21 19 17 23 23 H 1.48500 * 109.46586 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47067 * 299.99987 * 21 19 17 25 25 C 1.37905 * 119.77901 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.46734 * 59.99806 * 1 2 3 27 27 H 1.09002 * 109.46840 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46871 * 299.99725 * 1 2 3 29 29 H 1.07996 * 119.69074 * 0.02562 * 4 3 2 30 30 H 1.08012 * 119.91570 * 180.28322 * 5 4 3 31 31 H 1.08005 * 119.98766 * 359.97438 * 8 7 6 32 32 H 1.08002 * 119.90194 * 179.76273 * 9 8 7 33 33 H 1.09003 * 109.47604 * 299.99452 * 14 13 12 34 34 H 1.08996 * 109.47605 * 60.00464 * 14 13 12 35 35 H 1.09005 * 109.46811 * 180.02562 * 14 13 12 36 36 H 1.07998 * 120.10682 * 179.97438 * 15 12 10 37 37 H 0.96996 * 119.99916 * 179.97438 * 20 19 17 38 38 H 1.08000 * 120.08799 * 0.04254 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 1.2817 2.3775 0.0005 5 6 1.8897 3.6154 0.0068 6 6 3.2783 3.7128 0.0010 7 6 3.9311 5.0388 0.0014 8 6 4.9417 5.3219 0.9242 9 6 5.5464 6.5618 0.9268 10 6 5.1628 7.5258 0.0100 11 9 5.7630 8.7362 0.0142 12 6 4.1599 7.2509 -0.9174 13 16 3.6748 8.4814 -2.0817 14 6 2.3738 7.6510 -3.0347 15 6 3.5434 6.0102 -0.9231 16 6 4.0629 2.5302 0.0004 17 6 5.4693 2.6104 0.0007 18 1 5.9611 3.4730 -0.4240 19 6 6.2296 1.5717 0.5520 20 7 5.6608 0.6852 1.3275 21 14 8.0562 1.4520 0.1796 22 1 8.7389 2.6844 0.6490 23 1 8.6274 0.2725 0.8780 24 1 8.2542 1.3036 -1.2846 25 6 3.4234 1.2775 0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2038 2.3110 0.0014 30 1 1.2869 4.5117 0.0118 31 1 5.2462 4.5713 1.6386 32 1 6.3246 6.7798 1.6433 33 1 2.7847 6.7614 -3.5121 34 1 1.5619 7.3629 -2.3670 35 1 1.9933 8.3297 -3.7981 36 1 2.7655 5.7951 -1.6407 37 1 6.1874 -0.0345 1.7090 38 1 4.0095 0.3703 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238964994.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:03 Heat of formation + Delta-G solvation = -46.120700 kcal Electronic energy + Delta-G solvation = -23587.876235 eV Core-core repulsion = 20014.697380 eV Total energy + Delta-G solvation = -3573.178854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.46112 -39.10747 -38.27397 -36.22960 -33.74318 -31.14928 -31.07523 -29.84617 -28.81037 -28.04868 -26.20095 -25.34654 -22.73885 -22.34044 -21.00125 -20.04950 -17.90412 -17.46270 -16.59436 -16.25898 -15.92915 -15.27901 -15.16086 -15.02930 -14.90830 -14.77933 -13.96962 -13.69200 -13.63658 -13.34354 -13.00549 -12.87566 -12.64289 -12.40913 -12.32149 -11.96273 -11.72840 -11.48461 -11.29122 -11.20880 -11.06189 -10.70418 -10.62097 -10.31384 -10.06150 -9.89419 -9.70469 -9.35772 -9.27158 -8.28399 -7.64712 -7.21491 -7.03460 -6.74659 -4.57994 1.50591 1.62887 1.66012 2.51968 2.64782 2.83213 2.99385 3.02049 3.11332 3.80550 4.09954 4.20323 4.45422 4.64488 5.08454 5.11851 5.18080 5.41694 5.51107 5.57902 5.64014 5.65040 5.74964 5.82775 5.83276 5.96184 6.17832 6.22096 6.37625 6.52630 6.67171 6.76806 6.86183 7.01241 7.19162 7.26113 7.33858 7.54101 7.64755 7.81224 7.89002 8.21283 8.58441 8.66422 8.74053 9.98217 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010414 B = 0.005197 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.927210 B = 5386.557693 C = 7481.051844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.136 3.864 4 C -0.316 4.316 5 C -0.037 4.037 6 C -0.213 4.213 7 C 0.037 3.963 8 C -0.073 4.073 9 C -0.140 4.140 10 C 0.083 3.917 11 F -0.142 7.142 12 C -0.122 4.122 13 S -0.122 6.122 14 C -0.143 4.143 15 C -0.120 4.120 16 C 0.159 3.841 17 C -0.448 4.448 18 H 0.087 0.913 19 C 0.077 3.923 20 N -0.776 5.776 21 Si 0.906 3.094 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.262 1.262 25 C -0.192 4.192 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.144 0.856 32 H 0.132 0.868 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.127 0.873 37 H 0.286 0.714 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.263 5.781 -3.045 7.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C 0.092 3.908 4 C -0.336 4.336 5 C -0.056 4.056 6 C -0.215 4.215 7 C 0.035 3.965 8 C -0.093 4.093 9 C -0.160 4.160 10 C 0.058 3.942 11 F -0.121 7.121 12 C -0.235 4.235 13 S 0.118 5.882 14 C -0.312 4.312 15 C -0.143 4.143 16 C 0.156 3.844 17 C -0.476 4.476 18 H 0.105 0.895 19 C -0.143 4.143 20 N -0.400 5.400 21 Si 0.730 3.270 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.186 1.186 25 C -0.211 4.211 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.161 0.839 32 H 0.150 0.850 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.144 0.856 37 H 0.097 0.903 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.767 6.586 -3.139 8.211 hybrid contribution 0.130 -1.127 0.123 1.141 sum -3.637 5.459 -3.015 7.219 Atomic orbital electron populations 1.22775 0.80638 1.01983 1.00554 1.86015 1.19616 1.29032 1.89648 1.19019 0.92468 0.82532 0.96771 1.20367 0.97443 0.92431 1.23322 1.20322 0.93151 0.95322 0.96771 1.18448 0.92102 0.90728 1.20195 1.18738 0.93394 0.92484 0.91888 1.21444 0.94712 0.94836 0.98339 1.20962 1.02199 0.93472 0.99398 1.17076 0.96048 0.81913 0.99120 1.91440 1.82298 1.42319 1.96051 1.21495 1.01949 0.98783 1.01239 1.85314 1.45984 1.20229 1.36650 1.23650 1.00110 1.04765 1.02650 1.21187 1.01248 0.91508 1.00365 1.17188 0.92719 0.88803 0.85710 1.19559 0.90966 1.03966 1.33110 0.89543 1.25975 1.01462 0.94167 0.92715 1.69797 1.38821 1.11089 1.20284 0.86378 0.81582 0.78936 0.80151 1.18605 1.20128 1.18592 1.20530 0.89365 0.99104 1.12150 0.93669 0.89828 0.93580 0.88442 0.88904 0.83863 0.85029 0.89560 0.89731 0.87732 0.85554 0.90326 0.85478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 9.80 101.05 0.99 1.54 16 2 O -0.33 -6.89 10.48 -19.36 -0.20 -7.09 16 3 C 0.14 3.12 6.67 -39.24 -0.26 2.85 16 4 C -0.32 -6.61 9.02 -39.23 -0.35 -6.96 16 5 C -0.04 -0.77 9.49 -39.34 -0.37 -1.15 16 6 C -0.21 -4.72 5.52 -104.22 -0.58 -5.30 16 7 C 0.04 0.74 4.93 -104.92 -0.52 0.22 16 8 C -0.07 -1.41 7.98 -39.12 -0.31 -1.72 16 9 C -0.14 -2.42 10.00 -39.61 -0.40 -2.82 16 10 C 0.08 1.48 7.28 -39.09 -0.28 1.20 16 11 F -0.14 -2.51 16.74 2.25 0.04 -2.47 16 12 C -0.12 -2.12 6.11 -39.06 -0.24 -2.36 16 13 S -0.12 -1.81 22.16 -107.50 -2.38 -4.19 16 14 C -0.14 -1.60 9.15 101.05 0.92 -0.68 16 15 C -0.12 -2.15 8.83 -38.96 -0.34 -2.50 16 16 C 0.16 3.88 5.55 -106.58 -0.59 3.29 16 17 C -0.45 -10.73 7.07 -37.91 -0.27 -11.00 16 18 H 0.09 2.04 6.63 -52.49 -0.35 1.69 16 19 C 0.08 1.79 5.17 -17.32 -0.09 1.70 16 20 N -0.78 -18.70 10.99 55.55 0.61 -18.09 16 21 Si 0.91 17.61 29.59 -169.99 -5.03 12.58 16 22 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 23 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 25 C -0.19 -4.77 8.58 -38.79 -0.33 -5.11 16 26 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.05 0.67 7.64 -51.93 -0.40 0.27 16 29 H 0.10 1.78 6.25 -52.49 -0.33 1.46 16 30 H 0.09 1.70 8.04 -52.48 -0.42 1.28 16 31 H 0.14 2.85 7.27 -52.48 -0.38 2.47 16 32 H 0.13 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.09 0.97 7.75 -51.92 -0.40 0.57 16 34 H 0.08 0.91 7.74 -51.93 -0.40 0.51 16 35 H 0.10 0.92 8.14 -51.92 -0.42 0.49 16 36 H 0.13 2.08 5.85 -52.49 -0.31 1.77 16 37 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 38 H 0.13 3.34 6.26 -52.49 -0.33 3.01 16 LS Contribution 336.16 15.07 5.07 5.07 Total: -1.00 -26.31 336.16 -9.04 -35.35 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.12 Total: 7.63 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -3.02 Total: -28.79 kcal Atomic # 7 Polarization: -18.70 SS G_CDS: 0.61 Total: -18.09 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.20 Total: -7.09 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Atomic # 16 Polarization: -1.81 SS G_CDS: -2.38 Total: -4.19 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -26.31 -9.04 -35.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238964994.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.768 kcal (2) G-P(sol) polarization free energy of solvation -26.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds