Wall clock time and date at job start Tue Mar 31 2020 12:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35879 * 117.00225 * 2 1 4 4 C 1.39489 * 119.77308 * 0.02562 * 3 2 1 5 5 C 1.37917 * 120.61596 * 179.69687 * 4 3 2 6 6 C 1.39203 * 120.16891 * 0.56005 * 5 4 3 7 7 C 1.47793 * 120.22363 * 179.71887 * 6 5 4 8 8 C 1.39752 * 120.09276 * 129.98103 * 7 6 5 9 9 C 1.37951 * 120.02310 * 180.25316 * 8 7 6 10 10 C 1.38455 * 120.20654 * 359.49282 * 9 8 7 11 11 F 1.35102 * 119.91130 * 180.27810 * 10 9 8 12 12 C 1.39338 * 120.18281 * 0.25030 * 10 9 8 13 13 S 1.76209 * 120.00934 * 179.97438 * 12 10 9 14 14 C 1.81396 * 102.99596 * 180.02562 * 13 12 10 15 15 C 1.38550 * 119.98067 * 0.02562 * 12 10 9 16 16 C 1.41917 * 119.55049 * 359.44766 * 6 5 4 17 17 C 1.40872 * 120.30058 * 180.29429 * 16 6 5 18 18 H 1.07994 * 119.99959 * 332.94535 * 17 16 6 19 19 C 1.40031 * 119.99643 * 152.93736 * 17 16 6 20 20 N 1.30795 * 120.00223 * 344.45642 * 19 17 16 21 21 Si 1.86806 * 119.99555 * 164.45372 * 19 17 16 22 22 H 1.48495 * 109.47265 * 60.00407 * 21 19 17 23 23 H 1.48500 * 109.46586 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47067 * 299.99987 * 21 19 17 25 25 C 1.37905 * 119.77901 * 179.97438 * 3 2 1 26 26 H 1.09000 * 109.46734 * 59.99806 * 1 2 3 27 27 H 1.09002 * 109.46840 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46871 * 299.99725 * 1 2 3 29 29 H 1.07996 * 119.69074 * 0.02562 * 4 3 2 30 30 H 1.08012 * 119.91570 * 180.28322 * 5 4 3 31 31 H 1.08005 * 119.98766 * 359.97438 * 8 7 6 32 32 H 1.08002 * 119.90194 * 179.76273 * 9 8 7 33 33 H 1.09003 * 109.47604 * 299.99452 * 14 13 12 34 34 H 1.08996 * 109.47605 * 60.00464 * 14 13 12 35 35 H 1.09005 * 109.46811 * 180.02562 * 14 13 12 36 36 H 1.07998 * 120.10682 * 179.97438 * 15 12 10 37 37 H 0.96996 * 119.99916 * 179.97438 * 20 19 17 38 38 H 1.08000 * 120.08799 * 0.04254 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2107 0.0000 4 6 1.2817 2.3775 0.0005 5 6 1.8897 3.6154 0.0068 6 6 3.2783 3.7128 0.0010 7 6 3.9311 5.0388 0.0014 8 6 4.9417 5.3219 0.9242 9 6 5.5464 6.5618 0.9268 10 6 5.1628 7.5258 0.0100 11 9 5.7630 8.7362 0.0142 12 6 4.1599 7.2509 -0.9174 13 16 3.6748 8.4814 -2.0817 14 6 2.3738 7.6510 -3.0347 15 6 3.5434 6.0102 -0.9231 16 6 4.0629 2.5302 0.0004 17 6 5.4693 2.6104 0.0007 18 1 5.9611 3.4730 -0.4240 19 6 6.2296 1.5717 0.5520 20 7 5.6608 0.6852 1.3275 21 14 8.0562 1.4520 0.1796 22 1 8.7389 2.6844 0.6490 23 1 8.6274 0.2725 0.8780 24 1 8.2542 1.3036 -1.2846 25 6 3.4234 1.2775 0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2038 2.3110 0.0014 30 1 1.2869 4.5117 0.0118 31 1 5.2462 4.5713 1.6386 32 1 6.3246 6.7798 1.6433 33 1 2.7847 6.7614 -3.5121 34 1 1.5619 7.3629 -2.3670 35 1 1.9933 8.3297 -3.7981 36 1 2.7655 5.7951 -1.6407 37 1 6.1874 -0.0345 1.7090 38 1 4.0095 0.3703 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238964994.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:02 Heat of formation + Delta-G solvation = -57.000172 kcal Electronic energy + Delta-G solvation = -23588.348004 eV Core-core repulsion = 20014.697380 eV Total energy + Delta-G solvation = -3573.650624 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.85061 -40.69920 -39.75885 -37.83249 -35.45782 -32.64316 -32.49821 -31.53598 -29.82380 -29.48888 -27.63973 -27.02348 -24.18162 -23.83845 -22.67170 -21.61475 -19.56269 -18.84445 -18.04861 -17.86245 -17.38164 -16.81342 -16.61475 -16.44640 -16.34406 -16.31380 -15.16277 -15.05504 -14.89746 -14.60633 -14.53084 -14.33442 -14.19317 -13.86982 -13.53091 -13.36665 -13.20900 -13.00388 -12.84582 -12.71563 -12.58352 -12.17221 -12.05118 -11.83170 -11.59881 -11.37671 -11.20121 -11.01380 -10.69632 -9.74663 -9.40265 -8.77825 -8.52697 -8.30918 -6.37313 0.03770 0.22419 0.50811 0.96533 1.12771 1.38780 1.43345 1.48192 1.52715 2.18284 2.61333 2.71286 2.78473 3.25478 3.66449 3.83981 4.03867 4.26504 4.26827 4.28249 4.35719 4.39787 4.47391 4.50145 4.56585 4.74661 4.75886 4.85944 4.95377 5.03126 5.07346 5.12165 5.28897 5.30961 5.51180 5.68574 5.80078 5.88982 5.98258 6.11352 6.15227 6.46929 6.87410 6.90807 7.02454 8.28407 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010414 B = 0.005197 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.927210 B = 5386.557693 C = 7481.051844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.131 3.869 4 C -0.313 4.313 5 C -0.040 4.040 6 C -0.217 4.217 7 C 0.017 3.983 8 C -0.085 4.085 9 C -0.133 4.133 10 C 0.075 3.925 11 F -0.140 7.140 12 C -0.125 4.125 13 S -0.130 6.130 14 C -0.138 4.138 15 C -0.115 4.115 16 C 0.134 3.866 17 C -0.469 4.469 18 H 0.083 0.917 19 C 0.043 3.957 20 N -0.811 5.811 21 Si 0.967 3.033 22 H -0.256 1.256 23 H -0.269 1.269 24 H -0.264 1.264 25 C -0.227 4.227 26 H 0.059 0.941 27 H 0.114 0.886 28 H 0.054 0.946 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.154 0.846 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.134 0.866 36 H 0.143 0.857 37 H 0.289 0.711 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.481 7.309 -3.988 9.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.267 6.267 3 C 0.087 3.913 4 C -0.332 4.332 5 C -0.058 4.058 6 C -0.219 4.219 7 C 0.015 3.985 8 C -0.105 4.105 9 C -0.153 4.153 10 C 0.050 3.950 11 F -0.119 7.119 12 C -0.238 4.238 13 S 0.111 5.889 14 C -0.306 4.306 15 C -0.138 4.138 16 C 0.132 3.868 17 C -0.497 4.497 18 H 0.101 0.899 19 C -0.175 4.175 20 N -0.436 5.436 21 Si 0.788 3.212 22 H -0.180 1.180 23 H -0.193 1.193 24 H -0.188 1.188 25 C -0.247 4.247 26 H 0.077 0.923 27 H 0.133 0.867 28 H 0.073 0.927 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.172 0.828 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.100 0.900 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.007 8.122 -4.085 10.378 hybrid contribution 0.318 -1.522 0.357 1.595 sum -4.689 6.600 -3.728 8.913 Atomic orbital electron populations 1.23155 0.77532 1.04541 1.01587 1.85980 1.22856 1.28422 1.89405 1.19140 0.92171 0.83956 0.96043 1.20693 0.98900 0.91681 1.21939 1.20676 0.92899 0.96474 0.95729 1.18713 0.92891 0.91069 1.19195 1.18747 0.94259 0.92207 0.93244 1.21310 0.95332 0.95329 0.98552 1.21108 1.02113 0.92516 0.99530 1.17233 0.96321 0.82017 0.99383 1.91443 1.82271 1.42155 1.96051 1.21722 1.01310 0.99244 1.01515 1.85370 1.47493 1.19857 1.36204 1.23800 0.98799 1.05159 1.02813 1.21250 1.01448 0.91117 0.99993 1.17492 0.93438 0.89570 0.86339 1.19643 0.91317 1.04524 1.34223 0.89934 1.26669 1.05151 0.93549 0.92101 1.69867 1.40345 1.11902 1.21468 0.85461 0.76895 0.79219 0.79633 1.17960 1.19313 1.18803 1.20466 0.90592 0.98538 1.15141 0.92263 0.86736 0.92701 0.85367 0.85942 0.85529 0.82794 0.89466 0.88874 0.84818 0.83971 0.90000 0.88127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 9.80 113.37 1.11 1.86 16 2 O -0.35 -14.72 10.48 -92.19 -0.97 -15.69 16 3 C 0.13 6.07 6.67 22.49 0.15 6.22 16 4 C -0.31 -12.64 9.02 22.50 0.20 -12.44 16 5 C -0.04 -1.59 9.49 22.43 0.21 -1.38 16 6 C -0.22 -9.69 5.52 -19.61 -0.11 -9.80 16 7 C 0.02 0.69 4.93 -20.06 -0.10 0.59 16 8 C -0.08 -3.29 7.98 22.57 0.18 -3.11 16 9 C -0.13 -4.50 10.00 22.25 0.22 -4.27 16 10 C 0.08 2.58 7.28 22.59 0.16 2.75 16 11 F -0.14 -4.72 16.74 44.97 0.75 -3.96 16 12 C -0.13 -4.14 6.11 22.61 0.14 -4.00 16 13 S -0.13 -3.52 22.16 -56.49 -1.25 -4.78 16 14 C -0.14 -2.60 9.15 113.37 1.04 -1.57 16 15 C -0.11 -3.95 8.83 22.67 0.20 -3.75 16 16 C 0.13 6.82 5.55 -21.13 -0.12 6.70 16 17 C -0.47 -23.44 7.07 23.35 0.17 -23.28 16 18 H 0.08 4.05 6.63 -2.91 -0.02 4.03 16 19 C 0.04 2.04 5.17 85.28 0.44 2.48 16 20 N -0.81 -41.07 10.99 21.84 0.24 -40.83 16 21 Si 0.97 37.05 29.59 68.60 2.03 39.08 16 22 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 23 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 24 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 25 C -0.23 -11.85 8.58 22.78 0.20 -11.65 16 26 H 0.06 1.51 7.65 -2.39 -0.02 1.49 16 27 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.05 1.45 7.64 -2.39 -0.02 1.43 16 29 H 0.13 4.30 6.25 -2.91 -0.02 4.28 16 30 H 0.12 4.12 8.04 -2.90 -0.02 4.10 16 31 H 0.13 5.27 7.27 -2.91 -0.02 5.25 16 32 H 0.15 4.38 8.06 -2.91 -0.02 4.35 16 33 H 0.09 1.69 7.75 -2.39 -0.02 1.67 16 34 H 0.09 1.66 7.74 -2.39 -0.02 1.64 16 35 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.14 4.33 5.85 -2.91 -0.02 4.32 16 37 H 0.29 13.40 8.30 -92.71 -0.77 12.64 16 38 H 0.10 5.66 6.26 -2.91 -0.02 5.65 16 Total: -1.00 -58.98 336.16 6.00 -52.98 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 1.10 Total: 27.83 kcal Atomic # 6 Polarization: -58.73 SS G_CDS: 4.10 Total: -54.64 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.24 Total: -40.83 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.97 Total: -15.69 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.75 Total: -3.96 kcal Atomic # 14 Polarization: 37.05 SS G_CDS: 2.03 Total: 39.08 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.25 Total: -4.78 kcal Total: -58.98 6.00 -52.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238964994.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.020 kcal (2) G-P(sol) polarization free energy of solvation -58.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds