Wall clock time and date at job start Tue Mar 31 2020 11:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47388 * 2 1 4 4 O 1.42901 * 109.47062 * 239.99673 * 2 1 3 5 5 C 1.35529 * 117.00211 * 270.00019 * 4 2 1 6 6 N 1.32146 * 119.78639 * 359.73139 * 5 4 2 7 7 C 1.31954 * 121.81585 * 179.74850 * 6 5 4 8 8 C 1.38449 * 121.16979 * 0.52718 * 7 6 5 9 9 Cl 1.73606 * 120.28083 * 179.76527 * 8 7 6 10 10 C 1.38465 * 119.43587 * 359.74010 * 8 7 6 11 11 C 1.39972 * 118.33108 * 0.02562 * 10 8 7 12 12 C 1.47637 * 120.59154 * 179.97438 * 11 10 8 13 13 N 1.32650 * 120.00525 * 229.38290 * 12 11 10 14 14 C 1.31726 * 121.71209 * 179.70145 * 13 12 11 15 15 C 1.38883 * 121.51325 * 0.58460 * 14 13 12 16 16 C 1.36873 * 119.81809 * 359.71176 * 15 14 13 17 17 C 1.41120 * 118.40472 * 0.02562 * 16 15 14 18 18 C 1.40839 * 120.72460 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99987 * 206.62815 * 18 17 16 20 20 C 1.40056 * 120.00003 * 26.63367 * 18 17 16 21 21 N 1.30793 * 119.99853 * 12.21280 * 20 18 17 22 22 Si 1.86792 * 119.99925 * 192.21047 * 20 18 17 23 23 H 1.48498 * 109.47383 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47227 * 120.00172 * 22 20 18 25 25 H 1.48510 * 109.47164 * 240.00166 * 22 20 18 26 26 H 1.08991 * 109.47090 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46996 * 300.00426 * 1 2 3 28 28 H 1.08999 * 109.46591 * 59.99974 * 1 2 3 29 29 H 1.09002 * 109.47071 * 120.00171 * 2 1 3 30 30 H 1.08997 * 109.46935 * 59.99840 * 3 2 1 31 31 H 1.08999 * 109.47372 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47154 * 300.00120 * 3 2 1 33 33 H 1.08000 * 119.41115 * 180.26462 * 7 6 5 34 34 H 1.07995 * 120.83080 * 180.02562 * 10 8 7 35 35 H 1.07999 * 119.24543 * 180.29391 * 14 13 12 36 36 H 1.08001 * 120.08729 * 179.68799 * 15 14 13 37 37 H 1.07998 * 120.79916 * 180.02562 * 16 15 14 38 38 H 0.96997 * 119.99588 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2115 -2.0095 -1.0653 6 7 1.9753 -2.6249 0.0801 7 6 2.1565 -3.9242 0.2220 8 6 2.6153 -4.7025 -0.8270 9 17 2.8514 -6.4091 -0.6129 10 6 2.8839 -4.1083 -2.0485 11 6 2.6792 -2.7295 -2.1758 12 6 2.9501 -2.0447 -3.4554 13 7 3.6857 -0.9410 -3.4743 14 6 3.9531 -0.3063 -4.5972 15 6 3.4671 -0.7553 -5.8183 16 6 2.6964 -1.8852 -5.8702 17 6 2.4179 -2.5638 -4.6646 18 6 1.6296 -3.7309 -4.6614 19 1 1.0689 -4.0014 -3.7789 20 6 1.5729 -4.5408 -5.8026 21 7 2.4233 -4.3555 -6.7790 22 14 0.2829 -5.8857 -5.9303 23 1 -0.5514 -5.8897 -4.7018 24 1 -0.5786 -5.6346 -7.1134 25 1 0.9535 -7.2027 -6.0767 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.9472 -4.3879 1.1747 34 1 3.2422 -4.6941 -2.8821 35 1 4.5603 0.5863 -4.5670 36 1 3.6964 -0.2141 -6.7243 37 1 2.3106 -2.2486 -6.8112 38 1 2.3837 -4.9162 -7.5695 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239309226.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:47 Heat of formation + Delta-G solvation = 6.879780 kcal Electronic energy + Delta-G solvation = -24297.747207 eV Core-core repulsion = 20744.742881 eV Total energy + Delta-G solvation = -3553.004326 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.25794 -38.32231 -37.77452 -36.10155 -34.24437 -33.06811 -32.55880 -30.69210 -30.21751 -28.61340 -27.07493 -25.84838 -23.71580 -23.20338 -21.50499 -20.95490 -20.50014 -18.05283 -17.45613 -16.53713 -16.30021 -15.63132 -15.22049 -14.89714 -14.46347 -14.22350 -13.99188 -13.64853 -13.42462 -12.87806 -12.70467 -12.42950 -12.29361 -12.23386 -12.09888 -11.88604 -11.79503 -11.56336 -11.42532 -11.35264 -11.12284 -10.88005 -10.66419 -10.62231 -10.34590 -10.01346 -9.55198 -9.27244 -9.24141 -8.34011 -8.07600 -8.00789 -7.39611 -6.94968 -4.62422 1.39672 1.65987 2.42202 2.55854 2.88490 2.96172 3.02030 3.12457 3.50930 3.75906 4.15017 4.49088 4.61661 5.07741 5.19210 5.21231 5.25455 5.42604 5.49594 5.62254 5.68416 5.85925 5.91299 5.97775 6.01194 6.18671 6.25290 6.31152 6.36896 6.42578 6.50458 6.68859 6.82393 6.87608 6.97464 7.10568 7.62800 7.72390 7.78933 7.83359 8.19914 8.30090 8.51976 8.59335 9.53889 9.90977 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009466 B = 0.006570 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.330040 B = 4260.976843 C = 6092.608048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.078 3.922 3 C -0.147 4.147 4 O -0.270 6.270 5 C 0.329 3.671 6 N -0.535 5.535 7 C 0.129 3.871 8 C -0.127 4.127 9 Cl -0.074 7.074 10 C -0.017 4.017 11 C -0.024 4.024 12 C 0.017 3.983 13 N -0.436 5.436 14 C -0.028 4.028 15 C -0.148 4.148 16 C -0.128 4.128 17 C 0.088 3.912 18 C -0.440 4.440 19 H 0.084 0.916 20 C 0.076 3.924 21 N -0.785 5.785 22 Si 0.907 3.093 23 H -0.256 1.256 24 H -0.269 1.269 25 H -0.270 1.270 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.130 0.870 38 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.127 1.280 8.369 8.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.021 3.979 3 C -0.204 4.204 4 O -0.176 6.176 5 C 0.149 3.851 6 N -0.258 5.258 7 C -0.028 4.028 8 C -0.157 4.157 9 Cl -0.045 7.045 10 C -0.043 4.043 11 C -0.028 4.028 12 C -0.121 4.121 13 N -0.143 5.143 14 C -0.190 4.190 15 C -0.168 4.168 16 C -0.154 4.154 17 C 0.083 3.917 18 C -0.469 4.469 19 H 0.102 0.898 20 C -0.144 4.144 21 N -0.409 5.409 22 Si 0.731 3.269 23 H -0.180 1.180 24 H -0.194 1.194 25 H -0.195 1.195 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.175 0.825 34 H 0.173 0.827 35 H 0.138 0.862 36 H 0.117 0.883 37 H 0.148 0.852 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.976 2.062 9.406 9.830 hybrid contribution -0.628 -1.624 -1.604 2.367 sum -2.604 0.439 7.802 8.237 Atomic orbital electron populations 1.22207 0.95447 1.02696 1.02079 1.22271 0.94007 0.92969 0.88650 1.21844 1.02097 0.94136 1.02309 1.86490 1.79099 1.15272 1.36711 1.20074 0.91155 0.84882 0.88947 1.67260 1.22875 1.11063 1.24648 1.22102 0.95520 0.87589 0.97616 1.21638 1.10997 0.85892 0.97140 1.98327 1.95927 1.12924 1.97367 1.21567 0.93778 0.93343 0.95635 1.18353 1.00846 0.91362 0.92266 1.18961 1.05428 0.97148 0.90580 1.67030 1.11088 1.05964 1.30193 1.21662 1.07229 1.01938 0.88186 1.21468 0.99878 0.97769 0.97681 1.21451 1.00552 0.94075 0.99323 1.18316 0.90189 0.92347 0.90818 1.19586 1.23238 1.04993 0.99119 0.89757 1.25986 0.95238 0.98634 0.94539 1.69750 1.29720 1.35180 1.06283 0.86231 0.80867 0.79941 0.79863 1.17970 1.19434 1.19454 0.92104 0.91649 0.92096 0.89766 0.91183 0.91778 0.91740 0.82535 0.82670 0.86160 0.88296 0.85220 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 9.53 37.16 0.35 -1.95 16 2 C 0.08 1.21 3.11 -26.73 -0.08 1.12 16 3 C -0.15 -1.91 9.56 37.16 0.36 -1.55 16 4 O -0.27 -5.42 8.77 -18.28 -0.16 -5.58 16 5 C 0.33 6.74 7.46 -16.62 -0.12 6.62 16 6 N -0.53 -9.66 8.63 -12.92 -0.11 -9.77 16 7 C 0.13 2.08 10.97 -17.42 -0.19 1.89 16 8 C -0.13 -2.19 6.33 -39.42 -0.25 -2.44 16 9 Cl -0.07 -1.11 28.98 -51.86 -1.50 -2.61 16 10 C -0.02 -0.34 7.92 -38.85 -0.31 -0.65 16 11 C -0.02 -0.54 5.09 -104.61 -0.53 -1.07 16 12 C 0.02 0.42 6.10 -82.26 -0.50 -0.08 16 13 N -0.44 -10.58 9.70 -9.19 -0.09 -10.67 16 14 C -0.03 -0.64 11.16 -17.36 -0.19 -0.83 16 15 C -0.15 -3.30 10.03 -39.84 -0.40 -3.70 16 16 C -0.13 -3.14 8.73 -38.98 -0.34 -3.48 16 17 C 0.09 2.22 5.58 -106.40 -0.59 1.62 16 18 C -0.44 -10.72 7.17 -37.92 -0.27 -10.99 16 19 H 0.08 2.04 6.62 -52.49 -0.35 1.69 16 20 C 0.08 1.74 5.26 -17.31 -0.09 1.65 16 21 N -0.79 -18.58 10.81 55.55 0.60 -17.98 16 22 Si 0.91 17.59 29.58 -169.99 -5.03 12.56 16 23 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 24 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 25 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 1.29 6.98 -51.93 -0.36 0.93 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.16 2.01 8.06 -52.49 -0.42 1.58 16 34 H 0.16 3.23 7.34 -52.49 -0.39 2.85 16 35 H 0.12 2.37 8.06 -52.49 -0.42 1.94 16 36 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 37 H 0.13 3.21 6.21 -52.49 -0.33 2.89 16 38 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 LS Contribution 340.25 15.07 5.13 5.13 Total: -1.00 -26.63 340.25 -8.69 -35.32 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -4.36 Total: 7.45 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -3.17 Total: -13.84 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.40 Total: -38.42 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.16 Total: -5.58 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.50 Total: -2.61 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -26.63 -8.69 -35.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239309226.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.199 kcal (2) G-P(sol) polarization free energy of solvation -26.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds