Wall clock time and date at job start Tue Mar 31 2020 11:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47388 * 2 1 4 4 O 1.42901 * 109.47062 * 239.99673 * 2 1 3 5 5 C 1.35529 * 117.00211 * 270.00019 * 4 2 1 6 6 N 1.32146 * 119.78639 * 359.73139 * 5 4 2 7 7 C 1.31954 * 121.81585 * 179.74850 * 6 5 4 8 8 C 1.38449 * 121.16979 * 0.52718 * 7 6 5 9 9 Cl 1.73606 * 120.28083 * 179.76527 * 8 7 6 10 10 C 1.38465 * 119.43587 * 359.74010 * 8 7 6 11 11 C 1.39972 * 118.33108 * 0.02562 * 10 8 7 12 12 C 1.47637 * 120.59154 * 179.97438 * 11 10 8 13 13 N 1.32650 * 120.00525 * 229.38290 * 12 11 10 14 14 C 1.31726 * 121.71209 * 179.70145 * 13 12 11 15 15 C 1.38883 * 121.51325 * 0.58460 * 14 13 12 16 16 C 1.36873 * 119.81809 * 359.71176 * 15 14 13 17 17 C 1.41120 * 118.40472 * 0.02562 * 16 15 14 18 18 C 1.40839 * 120.72460 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99987 * 206.62815 * 18 17 16 20 20 C 1.40056 * 120.00003 * 26.63367 * 18 17 16 21 21 N 1.30793 * 119.99853 * 12.21280 * 20 18 17 22 22 Si 1.86792 * 119.99925 * 192.21047 * 20 18 17 23 23 H 1.48498 * 109.47383 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47227 * 120.00172 * 22 20 18 25 25 H 1.48510 * 109.47164 * 240.00166 * 22 20 18 26 26 H 1.08991 * 109.47090 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46996 * 300.00426 * 1 2 3 28 28 H 1.08999 * 109.46591 * 59.99974 * 1 2 3 29 29 H 1.09002 * 109.47071 * 120.00171 * 2 1 3 30 30 H 1.08997 * 109.46935 * 59.99840 * 3 2 1 31 31 H 1.08999 * 109.47372 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47154 * 300.00120 * 3 2 1 33 33 H 1.08000 * 119.41115 * 180.26462 * 7 6 5 34 34 H 1.07995 * 120.83080 * 180.02562 * 10 8 7 35 35 H 1.07999 * 119.24543 * 180.29391 * 14 13 12 36 36 H 1.08001 * 120.08729 * 179.68799 * 15 14 13 37 37 H 1.07998 * 120.79916 * 180.02562 * 16 15 14 38 38 H 0.96997 * 119.99588 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.2115 -2.0095 -1.0653 6 7 1.9753 -2.6249 0.0801 7 6 2.1565 -3.9242 0.2220 8 6 2.6153 -4.7025 -0.8270 9 17 2.8514 -6.4091 -0.6129 10 6 2.8839 -4.1083 -2.0485 11 6 2.6792 -2.7295 -2.1758 12 6 2.9501 -2.0447 -3.4554 13 7 3.6857 -0.9410 -3.4743 14 6 3.9531 -0.3063 -4.5972 15 6 3.4671 -0.7553 -5.8183 16 6 2.6964 -1.8852 -5.8702 17 6 2.4179 -2.5638 -4.6646 18 6 1.6296 -3.7309 -4.6614 19 1 1.0689 -4.0014 -3.7789 20 6 1.5729 -4.5408 -5.8026 21 7 2.4233 -4.3555 -6.7790 22 14 0.2829 -5.8857 -5.9303 23 1 -0.5514 -5.8897 -4.7018 24 1 -0.5786 -5.6346 -7.1134 25 1 0.9535 -7.2027 -6.0767 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.9472 -4.3879 1.1747 34 1 3.2422 -4.6941 -2.8821 35 1 4.5603 0.5863 -4.5670 36 1 3.6964 -0.2141 -6.7243 37 1 2.3106 -2.2486 -6.8112 38 1 2.3837 -4.9162 -7.5695 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239309226.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:46 Heat of formation + Delta-G solvation = -7.171515 kcal Electronic energy + Delta-G solvation = -24298.356517 eV Core-core repulsion = 20744.742881 eV Total energy + Delta-G solvation = -3553.613636 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.72834 -40.04280 -39.18820 -37.41387 -36.01954 -34.48139 -33.94255 -32.48092 -31.78466 -30.20467 -28.14698 -27.61530 -25.24348 -24.70912 -23.27329 -22.44158 -21.97409 -19.49111 -19.21334 -18.00258 -17.88793 -17.26747 -16.64713 -16.39235 -16.14084 -15.62296 -15.47362 -15.07758 -14.83462 -14.38778 -14.14476 -14.13530 -13.87295 -13.44735 -13.43321 -13.23952 -13.18226 -13.16150 -13.00287 -12.77811 -12.56775 -12.27111 -12.16352 -11.83299 -11.73553 -11.58363 -11.27114 -10.83278 -10.72241 -10.09995 -9.87855 -9.65632 -9.02763 -8.68157 -6.45352 -0.09293 0.15336 0.81452 1.05657 1.16131 1.36514 1.48118 1.49982 2.14615 2.15733 2.64862 2.73501 3.25682 3.63820 3.73519 3.83378 3.95343 4.07944 4.12219 4.29041 4.37732 4.48949 4.59866 4.70196 4.77481 4.84443 4.85422 4.88130 4.93088 5.04402 5.06460 5.18951 5.23684 5.28202 5.29176 5.40788 5.82303 5.92270 6.01727 6.37558 6.47262 6.71212 6.74095 6.80979 7.73011 8.20074 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009466 B = 0.006570 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.330040 B = 4260.976843 C = 6092.608048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.067 3.933 3 C -0.141 4.141 4 O -0.295 6.295 5 C 0.324 3.676 6 N -0.530 5.530 7 C 0.146 3.854 8 C -0.128 4.128 9 Cl -0.049 7.049 10 C -0.019 4.019 11 C -0.063 4.063 12 C 0.009 3.991 13 N -0.453 5.453 14 C -0.037 4.037 15 C -0.146 4.146 16 C -0.152 4.152 17 C 0.060 3.940 18 C -0.457 4.457 19 H 0.077 0.923 20 C 0.043 3.957 21 N -0.812 5.812 22 Si 0.970 3.030 23 H -0.259 1.259 24 H -0.261 1.261 25 H -0.261 1.261 26 H 0.044 0.956 27 H 0.099 0.901 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.200 0.800 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.853 0.885 10.092 10.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.011 3.989 3 C -0.198 4.198 4 O -0.202 6.202 5 C 0.145 3.855 6 N -0.254 5.254 7 C -0.012 4.012 8 C -0.157 4.157 9 Cl -0.021 7.021 10 C -0.046 4.046 11 C -0.067 4.067 12 C -0.129 4.129 13 N -0.161 5.161 14 C -0.198 4.198 15 C -0.166 4.166 16 C -0.178 4.178 17 C 0.055 3.945 18 C -0.486 4.486 19 H 0.095 0.905 20 C -0.174 4.174 21 N -0.436 5.436 22 Si 0.791 3.209 23 H -0.183 1.183 24 H -0.186 1.186 25 H -0.185 1.185 26 H 0.063 0.937 27 H 0.117 0.883 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.124 0.876 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.217 0.783 34 H 0.156 0.844 35 H 0.167 0.833 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.690 1.693 11.125 11.570 hybrid contribution -0.350 -1.492 -2.026 2.541 sum -3.040 0.201 9.098 9.595 Atomic orbital electron populations 1.22166 0.94198 1.02036 1.03317 1.22653 0.95089 0.93793 0.87321 1.21858 1.01537 0.92730 1.03637 1.86458 1.79298 1.15277 1.39154 1.20067 0.91095 0.85255 0.89051 1.67393 1.22749 1.11815 1.23396 1.22818 0.92813 0.86864 0.98665 1.21655 1.10479 0.87281 0.96298 1.98334 1.95780 1.10793 1.97191 1.21454 0.94001 0.92749 0.96364 1.18423 1.03681 0.92329 0.92296 1.19339 1.04851 0.97150 0.91589 1.67102 1.11596 1.06402 1.30985 1.22205 1.07081 1.02594 0.87943 1.21746 0.98809 0.97131 0.98952 1.21502 1.02057 0.95297 0.98920 1.18659 0.91029 0.93222 0.91552 1.19616 1.23850 1.05493 0.99668 0.90486 1.26681 0.96634 1.00312 0.93791 1.69781 1.30736 1.36263 1.06862 0.85303 0.78396 0.77499 0.79722 1.18303 1.18592 1.18526 0.93665 0.88263 0.92936 0.89536 0.87622 0.92652 0.92549 0.78289 0.84366 0.83321 0.85275 0.86149 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 9.53 71.98 0.69 -3.51 16 2 C 0.07 2.02 3.11 30.59 0.10 2.11 16 3 C -0.14 -3.45 9.56 71.98 0.69 -2.76 16 4 O -0.30 -11.98 8.77 -88.33 -0.77 -12.76 16 5 C 0.32 13.38 7.46 85.16 0.63 14.01 16 6 N -0.53 -18.45 8.63 -307.78 -2.66 -21.11 16 7 C 0.15 4.39 10.97 84.72 0.93 5.32 16 8 C -0.13 -4.26 6.33 22.37 0.14 -4.12 16 9 Cl -0.05 -1.39 28.98 -2.72 -0.08 -1.47 16 10 C -0.02 -0.79 7.92 22.74 0.18 -0.61 16 11 C -0.06 -2.87 5.09 -19.86 -0.10 -2.97 16 12 C 0.01 0.46 6.10 42.42 0.26 0.72 16 13 N -0.45 -22.55 9.70 -182.98 -1.77 -24.33 16 14 C -0.04 -1.69 11.16 84.86 0.95 -0.74 16 15 C -0.15 -6.61 10.03 22.10 0.22 -6.39 16 16 C -0.15 -7.69 8.73 22.66 0.20 -7.49 16 17 C 0.06 3.15 5.58 -21.02 -0.12 3.03 16 18 C -0.46 -23.10 7.17 23.35 0.17 -22.93 16 19 H 0.08 3.88 6.62 -2.91 -0.02 3.86 16 20 C 0.04 2.02 5.26 85.29 0.45 2.47 16 21 N -0.81 -39.28 10.81 21.85 0.24 -39.04 16 22 Si 0.97 36.14 29.58 68.60 2.03 38.17 16 23 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 24 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 25 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 26 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.09 2.53 6.98 -2.39 -0.02 2.51 16 30 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.20 4.26 8.06 -2.91 -0.02 4.24 16 34 H 0.14 6.02 7.34 -2.91 -0.02 6.00 16 35 H 0.15 5.71 8.06 -2.91 -0.02 5.69 16 36 H 0.13 4.88 8.06 -2.91 -0.02 4.86 16 37 H 0.12 6.21 6.21 -2.91 -0.02 6.19 16 38 H 0.29 12.76 8.29 -92.71 -0.77 11.99 16 Total: -1.00 -59.46 340.25 3.45 -56.01 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 1.09 Total: 28.38 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: 5.38 Total: -23.86 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -4.20 Total: -84.48 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.77 Total: -12.76 kcal Atomic # 14 Polarization: 36.14 SS G_CDS: 2.03 Total: 38.17 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -59.46 3.45 -56.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239309226.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.841 kcal (2) G-P(sol) polarization free energy of solvation -59.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds