Wall clock time and date at job start Tue Mar 31 2020 11:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47212 * 2 1 4 4 O 1.42906 * 109.46773 * 240.00495 * 2 1 3 5 5 C 1.35539 * 116.99947 * 269.99839 * 4 2 1 6 6 N 1.32147 * 119.78039 * 359.73270 * 5 4 2 7 7 C 1.31961 * 121.80971 * 179.71070 * 6 5 4 8 8 C 1.38436 * 121.15501 * 0.56299 * 7 6 5 9 9 Cl 1.73591 * 120.28737 * 179.74885 * 8 7 6 10 10 C 1.38490 * 119.42374 * 359.72556 * 8 7 6 11 11 C 1.39903 * 118.34053 * 0.02562 * 10 8 7 12 12 C 1.47795 * 120.58611 * 180.02562 * 11 10 8 13 13 C 1.39990 * 119.45521 * 359.97438 * 12 11 10 14 14 C 1.36550 * 119.46156 * 180.02562 * 13 12 11 15 15 C 1.41337 * 118.42329 * 359.97438 * 14 13 12 16 16 C 1.41016 * 120.54437 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00313 * 330.33482 * 16 15 14 18 18 C 1.40006 * 119.99787 * 150.33022 * 16 15 14 19 19 N 1.30807 * 119.99993 * 161.81086 * 18 16 15 20 20 Si 1.86807 * 119.99896 * 341.80714 * 18 16 15 21 21 H 1.48499 * 109.46816 * 95.40806 * 20 18 16 22 22 H 1.48500 * 109.46914 * 215.41054 * 20 18 16 23 23 H 1.48500 * 109.47056 * 335.40833 * 20 18 16 24 24 C 1.40959 * 118.90347 * 359.97438 * 15 14 13 25 25 N 1.31248 * 120.40774 * 359.72550 * 24 15 14 26 26 H 1.08996 * 109.47789 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46833 * 299.99796 * 1 2 3 28 28 H 1.09001 * 109.47622 * 59.99035 * 1 2 3 29 29 H 1.08989 * 109.47221 * 120.00975 * 2 1 3 30 30 H 1.09008 * 109.46692 * 60.00717 * 3 2 1 31 31 H 1.09002 * 109.47002 * 180.02562 * 3 2 1 32 32 H 1.08989 * 109.47824 * 300.00606 * 3 2 1 33 33 H 1.08000 * 119.42039 * 180.28850 * 7 6 5 34 34 H 1.07991 * 120.83110 * 180.02562 * 10 8 7 35 35 H 1.08004 * 120.26713 * 0.02562 * 13 12 11 36 36 H 1.07998 * 120.78265 * 180.02562 * 14 13 12 37 37 H 0.96999 * 119.99767 * 180.02562 * 19 18 16 38 38 H 1.08001 * 119.79182 * 179.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2114 -2.0095 -1.0656 6 7 1.9752 -2.6248 0.0798 7 6 2.1557 -3.9243 0.2214 8 6 2.6144 -4.7022 -0.8278 9 17 2.8501 -6.4088 -0.6146 10 6 2.8832 -4.1072 -2.0491 11 6 2.6789 -2.7290 -2.1757 12 6 2.9493 -2.0431 -3.4566 13 6 3.4143 -2.7842 -4.5495 14 6 3.6647 -2.1506 -5.7329 15 6 3.4421 -0.7570 -5.8101 16 6 3.6864 -0.0576 -7.0100 17 1 4.4481 -0.4052 -7.6922 18 6 2.9415 1.0874 -7.3170 19 7 3.3792 1.9309 -8.2159 20 14 1.3225 1.4106 -6.4428 21 1 1.5555 2.3141 -5.2876 22 1 0.3694 2.0486 -7.3861 23 1 0.7557 0.1258 -5.9599 24 6 2.9718 -0.0778 -4.6679 25 7 2.7402 -0.7325 -3.5542 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 1.8933 -0.5139 0.8898 30 1 1.6767 1.9563 0.8901 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8898 33 1 1.9461 -4.3884 1.1739 34 1 3.2414 -4.6924 -2.8830 35 1 3.5737 -3.8484 -4.4574 36 1 4.0235 -2.7015 -6.5897 37 1 2.8632 2.7243 -8.4283 38 1 2.7971 0.9871 -4.7108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239310240.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:53 Heat of formation + Delta-G solvation = 13.004655 kcal Electronic energy + Delta-G solvation = -23841.913934 eV Core-core repulsion = 20289.175203 eV Total energy + Delta-G solvation = -3552.738731 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.45095 -38.59380 -37.94408 -36.36551 -34.37568 -33.05165 -32.71930 -31.47192 -30.46563 -29.27710 -27.10449 -25.81454 -23.98545 -23.02660 -22.06017 -21.03576 -20.63449 -18.22294 -17.87217 -16.73638 -16.64016 -15.66977 -15.43123 -15.11945 -14.61212 -14.32080 -14.00914 -13.83746 -13.60208 -13.18831 -12.87371 -12.78910 -12.68947 -12.33593 -12.20423 -12.10924 -11.95471 -11.84619 -11.48438 -11.26498 -11.16131 -11.05951 -10.71366 -10.65204 -10.42247 -10.21227 -9.83442 -9.50008 -9.41569 -8.72013 -8.40213 -8.16351 -7.41445 -7.30923 -4.75491 1.02445 1.34640 2.17411 2.41331 2.56941 2.98361 3.07979 3.16161 3.40116 3.75000 3.87404 4.41055 4.43915 4.92358 4.96361 5.05297 5.16120 5.19713 5.29496 5.41183 5.60102 5.66744 5.71663 5.81172 5.90823 5.94815 5.97093 6.10698 6.17206 6.27644 6.33276 6.38991 6.43900 6.52923 6.72912 6.96625 7.24831 7.35766 7.66753 7.71631 7.91987 8.04720 8.23282 8.36421 9.30659 9.67576 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013069 B = 0.004636 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.900037 B = 6037.874274 C = 7808.092865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.074 3.926 3 C -0.147 4.147 4 O -0.246 6.246 5 C 0.329 3.671 6 N -0.528 5.528 7 C 0.120 3.880 8 C -0.118 4.118 9 Cl -0.072 7.072 10 C -0.062 4.062 11 C -0.033 4.033 12 C -0.009 4.009 13 C -0.101 4.101 14 C -0.184 4.184 15 C 0.046 3.954 16 C -0.409 4.409 17 H 0.098 0.902 18 C 0.081 3.919 19 N -0.780 5.780 20 Si 0.912 3.088 21 H -0.260 1.260 22 H -0.284 1.284 23 H -0.244 1.244 24 C -0.025 4.025 25 N -0.405 5.405 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.158 0.842 34 H 0.147 0.853 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.293 0.707 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.545 -5.930 12.283 14.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.017 3.983 3 C -0.204 4.204 4 O -0.151 6.151 5 C 0.148 3.852 6 N -0.253 5.253 7 C -0.036 4.036 8 C -0.147 4.147 9 Cl -0.044 7.044 10 C -0.088 4.088 11 C -0.037 4.037 12 C -0.143 4.143 13 C -0.121 4.121 14 C -0.209 4.209 15 C 0.041 3.959 16 C -0.436 4.436 17 H 0.116 0.884 18 C -0.142 4.142 19 N -0.402 5.402 20 Si 0.737 3.263 21 H -0.186 1.186 22 H -0.211 1.211 23 H -0.167 1.167 24 C -0.192 4.192 25 N -0.112 5.112 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.175 0.825 34 H 0.165 0.835 35 H 0.124 0.876 36 H 0.131 0.869 37 H 0.104 0.896 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.071 -4.720 13.302 14.690 hybrid contribution -0.055 -0.893 -1.097 1.415 sum -4.126 -5.613 12.205 14.053 Atomic orbital electron populations 1.22192 0.95441 1.02475 1.02199 1.22319 0.94127 0.93190 0.88713 1.21839 1.01977 0.94101 1.02492 1.86759 1.78262 1.14326 1.35721 1.20040 0.91211 0.85515 0.88425 1.67338 1.22285 1.11030 1.24607 1.22119 0.96084 0.87652 0.97728 1.21553 1.10241 0.85890 0.97019 1.98336 1.95893 1.12722 1.97402 1.21263 0.98267 0.92942 0.96365 1.18656 1.01000 0.91329 0.92755 1.18351 1.13851 0.90338 0.91739 1.21229 0.98440 0.98746 0.93669 1.20991 1.08704 0.93935 0.97251 1.18745 0.90760 0.92366 0.94060 1.19619 1.15893 1.05041 1.03051 0.88389 1.26330 1.00312 0.93495 0.94058 1.69658 1.36903 1.08224 1.25373 0.86291 0.80115 0.81159 0.78765 1.18551 1.21094 1.16719 1.22492 1.09327 0.98528 0.88819 1.67071 1.09670 1.07743 1.26713 0.92335 0.91683 0.91950 0.89953 0.91212 0.91923 0.91437 0.82452 0.83542 0.87576 0.86936 0.89595 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.53 37.16 0.35 -1.86 16 2 C 0.07 1.10 3.11 -26.73 -0.08 1.01 16 3 C -0.15 -1.92 9.56 37.16 0.36 -1.56 16 4 O -0.25 -4.69 7.60 -18.31 -0.14 -4.83 16 5 C 0.33 6.12 7.48 -16.64 -0.12 6.00 16 6 N -0.53 -8.59 8.63 -12.93 -0.11 -8.70 16 7 C 0.12 1.69 10.97 -17.42 -0.19 1.50 16 8 C -0.12 -1.66 6.33 -39.42 -0.25 -1.91 16 9 Cl -0.07 -0.86 28.98 -51.86 -1.50 -2.36 16 10 C -0.06 -0.99 9.32 -38.87 -0.36 -1.35 16 11 C -0.03 -0.63 5.91 -104.59 -0.62 -1.25 16 12 C -0.01 -0.20 6.74 -82.76 -0.56 -0.76 16 13 C -0.10 -2.04 9.39 -39.53 -0.37 -2.41 16 14 C -0.18 -4.01 9.87 -39.01 -0.39 -4.39 16 15 C 0.05 1.11 5.12 -106.64 -0.55 0.56 16 16 C -0.41 -10.12 9.58 -37.87 -0.36 -10.48 16 17 H 0.10 2.50 8.06 -52.49 -0.42 2.07 16 18 C 0.08 1.95 5.41 -17.33 -0.09 1.85 16 19 N -0.78 -18.90 13.93 55.55 0.77 -18.12 16 20 Si 0.91 19.56 24.52 -169.99 -4.17 15.39 16 21 H -0.26 -5.46 6.71 56.52 0.38 -5.08 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.24 -5.57 6.86 56.52 0.39 -5.18 16 24 C -0.02 -0.60 8.36 -16.77 -0.14 -0.74 16 25 N -0.41 -9.56 8.13 -9.12 -0.07 -9.63 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.20 6.98 -51.93 -0.36 0.84 16 30 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.16 1.73 8.06 -52.49 -0.42 1.30 16 34 H 0.15 2.08 6.27 -52.49 -0.33 1.75 16 35 H 0.11 1.78 6.22 -52.48 -0.33 1.45 16 36 H 0.11 2.22 8.06 -52.49 -0.42 1.80 16 37 H 0.29 6.37 8.30 -40.82 -0.34 6.03 16 38 H 0.13 3.13 4.72 -52.49 -0.25 2.88 16 LS Contribution 334.65 15.07 5.04 5.04 Total: -1.00 -26.41 334.65 -7.80 -34.20 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -4.24 Total: 4.81 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -3.38 Total: -15.80 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.59 Total: -36.46 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.14 Total: -4.83 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.17 Total: 15.39 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.41 -7.80 -34.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239310240.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.207 kcal (2) G-P(sol) polarization free energy of solvation -26.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds