Wall clock time and date at job start Tue Mar 31 2020 11:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47212 * 2 1 4 4 O 1.42906 * 109.46773 * 240.00495 * 2 1 3 5 5 C 1.35539 * 116.99947 * 269.99839 * 4 2 1 6 6 N 1.32147 * 119.78039 * 359.73270 * 5 4 2 7 7 C 1.31961 * 121.80971 * 179.71070 * 6 5 4 8 8 C 1.38436 * 121.15501 * 0.56299 * 7 6 5 9 9 Cl 1.73591 * 120.28737 * 179.74885 * 8 7 6 10 10 C 1.38490 * 119.42374 * 359.72556 * 8 7 6 11 11 C 1.39903 * 118.34053 * 0.02562 * 10 8 7 12 12 C 1.47795 * 120.58611 * 180.02562 * 11 10 8 13 13 C 1.39990 * 119.45521 * 359.97438 * 12 11 10 14 14 C 1.36550 * 119.46156 * 180.02562 * 13 12 11 15 15 C 1.41337 * 118.42329 * 359.97438 * 14 13 12 16 16 C 1.41016 * 120.54437 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00313 * 330.33482 * 16 15 14 18 18 C 1.40006 * 119.99787 * 150.33022 * 16 15 14 19 19 N 1.30807 * 119.99993 * 161.81086 * 18 16 15 20 20 Si 1.86807 * 119.99896 * 341.80714 * 18 16 15 21 21 H 1.48499 * 109.46816 * 95.40806 * 20 18 16 22 22 H 1.48500 * 109.46914 * 215.41054 * 20 18 16 23 23 H 1.48500 * 109.47056 * 335.40833 * 20 18 16 24 24 C 1.40959 * 118.90347 * 359.97438 * 15 14 13 25 25 N 1.31248 * 120.40774 * 359.72550 * 24 15 14 26 26 H 1.08996 * 109.47789 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46833 * 299.99796 * 1 2 3 28 28 H 1.09001 * 109.47622 * 59.99035 * 1 2 3 29 29 H 1.08989 * 109.47221 * 120.00975 * 2 1 3 30 30 H 1.09008 * 109.46692 * 60.00717 * 3 2 1 31 31 H 1.09002 * 109.47002 * 180.02562 * 3 2 1 32 32 H 1.08989 * 109.47824 * 300.00606 * 3 2 1 33 33 H 1.08000 * 119.42039 * 180.28850 * 7 6 5 34 34 H 1.07991 * 120.83110 * 180.02562 * 10 8 7 35 35 H 1.08004 * 120.26713 * 0.02562 * 13 12 11 36 36 H 1.07998 * 120.78265 * 180.02562 * 14 13 12 37 37 H 0.96999 * 119.99767 * 180.02562 * 19 18 16 38 38 H 1.08001 * 119.79182 * 179.97438 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1669 5 6 2.2114 -2.0095 -1.0656 6 7 1.9752 -2.6248 0.0798 7 6 2.1557 -3.9243 0.2214 8 6 2.6144 -4.7022 -0.8278 9 17 2.8501 -6.4088 -0.6146 10 6 2.8832 -4.1072 -2.0491 11 6 2.6789 -2.7290 -2.1757 12 6 2.9493 -2.0431 -3.4566 13 6 3.4143 -2.7842 -4.5495 14 6 3.6647 -2.1506 -5.7329 15 6 3.4421 -0.7570 -5.8101 16 6 3.6864 -0.0576 -7.0100 17 1 4.4481 -0.4052 -7.6922 18 6 2.9415 1.0874 -7.3170 19 7 3.3792 1.9309 -8.2159 20 14 1.3225 1.4106 -6.4428 21 1 1.5555 2.3141 -5.2876 22 1 0.3694 2.0486 -7.3861 23 1 0.7557 0.1258 -5.9599 24 6 2.9718 -0.0778 -4.6679 25 7 2.7402 -0.7325 -3.5542 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 1.8933 -0.5139 0.8898 30 1 1.6767 1.9563 0.8901 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8898 33 1 1.9461 -4.3884 1.1739 34 1 3.2414 -4.6924 -2.8830 35 1 3.5737 -3.8484 -4.4574 36 1 4.0235 -2.7015 -6.5897 37 1 2.8632 2.7243 -8.4283 38 1 2.7971 0.9871 -4.7108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239310240.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:52 Heat of formation + Delta-G solvation = -1.986899 kcal Electronic energy + Delta-G solvation = -23842.564017 eV Core-core repulsion = 20289.175203 eV Total energy + Delta-G solvation = -3553.388814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.77714 -40.27956 -39.20650 -37.44194 -36.08329 -34.41963 -34.01284 -33.18294 -31.95620 -30.70457 -28.16541 -27.42429 -25.36988 -24.54056 -23.65556 -22.47244 -22.00777 -19.72930 -19.40071 -18.21639 -18.00077 -17.26891 -16.71059 -16.48756 -16.26575 -15.64625 -15.38627 -15.25166 -14.96838 -14.73098 -14.46860 -14.18548 -14.10480 -13.68697 -13.45155 -13.42545 -13.15747 -13.09018 -12.99077 -12.81799 -12.57174 -12.41609 -12.17025 -11.94160 -11.80592 -11.59313 -11.43450 -11.01103 -10.73796 -10.44573 -9.91883 -9.79751 -9.08330 -8.94834 -6.59222 -0.33435 0.09058 0.73749 0.84463 1.05866 1.23698 1.35691 1.41028 2.01726 2.18136 2.41476 2.76304 3.21686 3.52019 3.54148 3.73936 3.81197 3.98025 4.07087 4.16383 4.27405 4.33527 4.40326 4.48501 4.68578 4.71654 4.74078 4.83191 4.85666 4.89140 4.94779 5.01290 5.16836 5.23104 5.26614 5.30588 5.55020 5.62754 5.96392 6.08394 6.41256 6.45023 6.58040 6.76706 7.54911 7.97166 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013069 B = 0.004636 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.900037 B = 6037.874274 C = 7808.092865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.065 3.935 3 C -0.143 4.143 4 O -0.276 6.276 5 C 0.320 3.680 6 N -0.532 5.532 7 C 0.141 3.859 8 C -0.120 4.120 9 Cl -0.044 7.044 10 C -0.040 4.040 11 C -0.080 4.080 12 C 0.005 3.995 13 C -0.103 4.103 14 C -0.185 4.185 15 C 0.032 3.968 16 C -0.449 4.449 17 H 0.076 0.924 18 C 0.060 3.940 19 N -0.817 5.817 20 Si 0.957 3.043 21 H -0.259 1.259 22 H -0.266 1.266 23 H -0.268 1.268 24 C -0.045 4.045 25 N -0.426 5.426 26 H 0.048 0.952 27 H 0.095 0.905 28 H 0.048 0.952 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.196 0.804 34 H 0.166 0.834 35 H 0.149 0.851 36 H 0.130 0.870 37 H 0.302 0.698 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.423 -8.531 15.477 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.009 3.991 3 C -0.200 4.200 4 O -0.181 6.181 5 C 0.140 3.860 6 N -0.256 5.256 7 C -0.016 4.016 8 C -0.150 4.150 9 Cl -0.015 7.015 10 C -0.066 4.066 11 C -0.084 4.084 12 C -0.131 4.131 13 C -0.122 4.122 14 C -0.210 4.210 15 C 0.027 3.973 16 C -0.477 4.477 17 H 0.094 0.906 18 C -0.160 4.160 19 N -0.441 5.441 20 Si 0.781 3.219 21 H -0.184 1.184 22 H -0.191 1.191 23 H -0.192 1.192 24 C -0.208 4.208 25 N -0.133 5.133 26 H 0.067 0.933 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.122 0.878 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.213 0.787 34 H 0.183 0.817 35 H 0.166 0.834 36 H 0.148 0.852 37 H 0.113 0.887 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.950 -7.266 16.469 18.669 hybrid contribution 0.207 -0.514 -1.610 1.702 sum -4.743 -7.780 14.859 17.430 Atomic orbital electron populations 1.22142 0.94290 1.02056 1.03067 1.22613 0.95093 0.93634 0.87730 1.21859 1.01403 0.93330 1.03398 1.86725 1.78533 1.14972 1.37879 1.20188 0.91151 0.85606 0.89007 1.67449 1.22536 1.12070 1.23559 1.22852 0.92887 0.86864 0.98999 1.21593 1.09592 0.87461 0.96338 1.98359 1.95690 1.10199 1.97253 1.21504 0.95868 0.91694 0.97580 1.18692 1.04855 0.92780 0.92093 1.19030 1.10792 0.89922 0.93347 1.21608 0.97417 1.00763 0.92459 1.21325 1.07774 0.93283 0.98620 1.18872 0.91249 0.93539 0.93662 1.19504 1.17472 1.06913 1.03798 0.90611 1.26706 1.01715 0.93192 0.94371 1.69658 1.38174 1.09195 1.27070 0.85623 0.78145 0.79838 0.78325 1.18397 1.19126 1.19233 1.22451 1.10536 0.98535 0.89290 1.67132 1.10760 1.09019 1.26413 0.93315 0.88600 0.93253 0.89402 0.87806 0.92827 0.92952 0.78745 0.81703 0.83389 0.85195 0.88720 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 9.53 71.98 0.69 -3.29 16 2 C 0.07 1.88 3.11 30.59 0.10 1.97 16 3 C -0.14 -3.60 9.56 71.98 0.69 -2.91 16 4 O -0.28 -10.41 7.60 -88.44 -0.67 -11.08 16 5 C 0.32 11.41 7.48 85.15 0.64 12.05 16 6 N -0.53 -15.73 8.63 -307.82 -2.66 -18.39 16 7 C 0.14 3.34 10.97 84.72 0.93 4.27 16 8 C -0.12 -2.88 6.33 22.38 0.14 -2.74 16 9 Cl -0.04 -0.84 28.98 -2.72 -0.08 -0.92 16 10 C -0.04 -1.13 9.32 22.73 0.21 -0.92 16 11 C -0.08 -2.90 5.91 -19.84 -0.12 -3.01 16 12 C 0.01 0.23 6.74 41.91 0.28 0.51 16 13 C -0.10 -4.00 9.39 22.30 0.21 -3.79 16 14 C -0.18 -8.04 9.87 22.64 0.22 -7.82 16 15 C 0.03 1.57 5.12 -21.17 -0.11 1.47 16 16 C -0.45 -23.55 9.58 23.38 0.22 -23.32 16 17 H 0.08 4.16 8.06 -2.91 -0.02 4.13 16 18 C 0.06 3.00 5.41 85.27 0.46 3.47 16 19 N -0.82 -41.55 13.93 21.84 0.30 -41.25 16 20 Si 0.96 42.06 24.52 68.60 1.68 43.74 16 21 H -0.26 -11.10 6.71 99.48 0.67 -10.43 16 22 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 23 H -0.27 -12.65 6.86 99.48 0.68 -11.97 16 24 C -0.04 -2.24 8.36 85.45 0.71 -1.53 16 25 N -0.43 -20.44 8.13 -182.76 -1.49 -21.92 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.09 2.39 6.98 -2.39 -0.02 2.37 16 30 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 33 H 0.20 3.14 8.06 -2.91 -0.02 3.12 16 34 H 0.17 3.91 6.27 -2.92 -0.02 3.90 16 35 H 0.15 4.41 6.22 -2.91 -0.02 4.39 16 36 H 0.13 5.08 8.06 -2.91 -0.02 5.06 16 37 H 0.30 13.67 8.30 -92.71 -0.77 12.90 16 38 H 0.13 6.22 4.72 -2.91 -0.01 6.21 16 Total: -1.00 -60.06 334.65 3.40 -56.66 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 1.03 Total: 18.77 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 5.28 Total: -25.61 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -3.84 Total: -81.56 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -0.67 Total: -11.08 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.68 Total: 43.74 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.92 kcal Total: -60.06 3.40 -56.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239310240.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.671 kcal (2) G-P(sol) polarization free energy of solvation -60.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds