Wall clock time and date at job start Tue Mar 31 2020 11:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46945 * 2 1 4 4 O 1.42894 * 109.47476 * 119.99978 * 2 1 3 5 5 C 1.35635 * 116.99902 * 89.99855 * 4 2 1 6 6 N 1.32150 * 119.75586 * 0.02562 * 5 4 2 7 7 C 1.31956 * 121.79026 * 180.02562 * 6 5 4 8 8 C 1.38304 * 121.07929 * 359.97438 * 7 6 5 9 9 Cl 1.73597 * 120.30798 * 179.72742 * 8 7 6 10 10 C 1.38639 * 119.38453 * 0.02562 * 8 7 6 11 11 C 1.39557 * 118.36189 * 359.97438 * 10 8 7 12 12 C 1.48348 * 120.55127 * 180.02562 * 11 10 8 13 13 C 1.39747 * 120.41276 * 130.00269 * 12 11 10 14 14 N 1.31909 * 121.14688 * 180.02562 * 13 12 11 15 15 C 1.31523 * 122.12134 * 359.97438 * 14 13 12 16 16 C 1.40776 * 120.67297 * 359.97215 * 15 14 13 17 17 C 1.41438 * 120.60111 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00261 * 335.76252 * 17 16 15 19 19 C 1.39932 * 120.00026 * 155.76169 * 17 16 15 20 20 N 1.30835 * 119.99856 * 343.28599 * 19 17 16 21 21 Si 1.86803 * 120.00287 * 163.28279 * 19 17 16 22 22 H 1.48495 * 109.47019 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47119 * 119.99840 * 21 19 17 24 24 H 1.48499 * 109.47025 * 240.00055 * 21 19 17 25 25 C 1.39167 * 120.41459 * 309.72566 * 12 11 10 26 26 H 1.08996 * 109.47400 * 59.99941 * 1 2 3 27 27 H 1.09002 * 109.46915 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46946 * 299.99757 * 1 2 3 29 29 H 1.09003 * 109.46946 * 240.00243 * 2 1 3 30 30 H 1.09003 * 109.46949 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46716 * 299.99921 * 3 2 1 32 32 H 1.08994 * 109.46928 * 60.00222 * 3 2 1 33 33 H 1.07996 * 119.46087 * 179.97438 * 7 6 5 34 34 H 1.07994 * 120.82445 * 179.97438 * 10 8 7 35 35 H 1.08003 * 119.42774 * 359.97438 * 13 12 11 36 36 H 1.07998 * 119.66317 * 180.02562 * 15 14 13 37 37 H 0.96999 * 119.99957 * 180.02562 * 20 19 17 38 38 H 1.07996 * 120.95423 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2116 -2.0105 1.0652 6 7 1.9706 -2.6260 -0.0791 7 6 2.1557 -3.9246 -0.2223 8 6 2.6137 -4.7006 0.8270 9 17 2.8435 -6.4086 0.6184 10 6 2.8816 -4.1027 2.0488 11 6 2.6772 -2.7278 2.1731 12 6 2.9488 -2.0381 3.4581 13 6 3.7333 -0.8820 3.4885 14 7 3.9844 -0.2575 4.6229 15 6 3.5146 -0.6842 5.7750 16 6 2.7140 -1.8403 5.8402 17 6 2.2091 -2.2974 7.0798 18 1 2.7142 -2.0363 7.9980 19 6 1.0552 -3.0881 7.1166 20 7 0.2631 -3.1382 6.0764 21 14 0.6455 -4.0720 8.6507 22 1 1.6932 -3.8456 9.6784 23 1 -0.6713 -3.6363 9.1812 24 1 0.5893 -5.5167 8.3118 25 6 2.4208 -2.5311 4.6476 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.9463 -4.3892 -1.1745 34 1 3.2396 -4.6864 2.8838 35 1 4.1418 -0.4936 2.5673 36 1 3.7448 -0.1416 6.6800 37 1 -0.5370 -3.6860 6.1020 38 1 1.8068 -3.4195 4.6568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239323388.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:18 Heat of formation + Delta-G solvation = 4.150512 kcal Electronic energy + Delta-G solvation = -23872.860873 eV Core-core repulsion = 20319.738197 eV Total energy + Delta-G solvation = -3553.122676 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.58722 -38.31478 -38.04069 -36.38260 -34.15882 -33.43648 -32.88115 -30.62855 -30.35966 -28.51068 -27.17480 -25.69105 -24.15565 -23.27756 -21.66043 -21.13466 -20.58651 -18.33580 -17.52077 -16.70640 -16.09974 -15.68983 -15.38495 -15.19353 -14.73200 -14.41616 -14.19124 -13.85880 -13.50755 -13.05386 -12.96461 -12.46338 -12.41916 -12.33612 -12.20977 -12.03584 -11.69630 -11.57712 -11.55380 -11.30612 -11.15525 -11.10817 -10.78328 -10.64047 -10.54271 -10.14576 -9.76698 -9.44166 -9.39666 -8.49994 -8.22857 -7.86956 -7.45088 -6.90075 -4.54628 1.10348 1.29758 2.14812 2.55617 2.82540 3.00042 3.04953 3.12953 3.24616 3.81547 3.84535 4.33799 4.52842 4.88487 4.93667 5.03440 5.06903 5.21498 5.32630 5.53483 5.60076 5.72101 5.75812 5.83460 5.88150 6.00027 6.02226 6.08583 6.22833 6.27853 6.41727 6.55997 6.68315 6.89354 7.02401 7.11063 7.47600 7.58559 7.78109 7.83276 7.90990 8.34621 8.61451 8.63711 9.56835 10.01104 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009783 B = 0.005132 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.411931 B = 5454.138358 C = 7128.860996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.277 6.277 5 C 0.334 3.666 6 N -0.528 5.528 7 C 0.136 3.864 8 C -0.124 4.124 9 Cl -0.067 7.067 10 C -0.031 4.031 11 C -0.059 4.059 12 C -0.088 4.088 13 C 0.000 4.000 14 N -0.470 5.470 15 C -0.013 4.013 16 C 0.061 3.939 17 C -0.450 4.450 18 H 0.084 0.916 19 C 0.074 3.926 20 N -0.790 5.790 21 Si 0.911 3.089 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.271 1.271 25 C -0.111 4.111 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.162 0.838 34 H 0.150 0.850 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.283 0.717 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.002 -1.886 -11.356 11.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.022 3.978 3 C -0.207 4.207 4 O -0.183 6.183 5 C 0.154 3.846 6 N -0.252 5.252 7 C -0.020 4.020 8 C -0.153 4.153 9 Cl -0.038 7.038 10 C -0.057 4.057 11 C -0.063 4.063 12 C -0.091 4.091 13 C -0.158 4.158 14 N -0.177 5.177 15 C -0.174 4.174 16 C 0.056 3.944 17 C -0.480 4.480 18 H 0.102 0.898 19 C -0.144 4.144 20 N -0.415 5.415 21 Si 0.735 3.265 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.196 1.196 25 C -0.137 4.137 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.179 0.821 34 H 0.167 0.833 35 H 0.137 0.863 36 H 0.145 0.855 37 H 0.094 0.906 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.031 -0.671 -11.953 11.971 hybrid contribution -0.780 -1.979 1.109 2.399 sum -0.749 -2.650 -10.843 11.187 Atomic orbital electron populations 1.22209 0.95092 1.02815 1.02424 1.22341 0.94370 0.92970 0.88069 1.21886 1.02050 0.93953 1.02802 1.86502 1.79133 1.15089 1.37564 1.19921 0.90804 0.85095 0.88743 1.67321 1.22267 1.11130 1.24475 1.22191 0.94453 0.87552 0.97794 1.21678 1.10289 0.86271 0.97079 1.98345 1.95922 1.12138 1.97424 1.21476 0.95062 0.93083 0.96058 1.18917 1.01731 0.91868 0.93831 1.19087 1.01590 0.97860 0.90585 1.21650 1.03774 0.95335 0.95016 1.66971 1.20630 1.31324 0.98794 1.22563 1.04081 0.96444 0.94292 1.18438 0.91378 0.90804 0.93733 1.19572 1.07907 1.26718 0.93758 0.89757 1.25964 0.95237 0.95244 0.97975 1.69795 1.10058 1.31183 1.30467 0.86210 0.79186 0.79626 0.81514 1.18182 1.19842 1.19586 1.21761 1.00972 1.00490 0.90476 0.91434 0.92099 0.91792 0.89593 0.91768 0.90860 0.91389 0.82069 0.83263 0.86314 0.85546 0.90608 0.85248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 9.53 37.16 0.35 -1.84 16 2 C 0.08 1.11 3.11 -26.73 -0.08 1.03 16 3 C -0.15 -1.78 9.56 37.16 0.36 -1.43 16 4 O -0.28 -5.04 8.15 -18.60 -0.15 -5.19 16 5 C 0.33 6.09 7.39 -16.77 -0.12 5.97 16 6 N -0.53 -8.45 8.64 -13.04 -0.11 -8.56 16 7 C 0.14 1.92 10.97 -17.47 -0.19 1.73 16 8 C -0.12 -1.83 6.34 -39.41 -0.25 -2.08 16 9 Cl -0.07 -0.86 28.98 -51.86 -1.50 -2.36 16 10 C -0.03 -0.54 9.49 -38.94 -0.37 -0.91 16 11 C -0.06 -1.16 5.51 -104.60 -0.58 -1.74 16 12 C -0.09 -2.00 5.29 -104.83 -0.55 -2.56 16 13 C 0.00 0.01 9.98 -16.95 -0.17 -0.16 16 14 N -0.47 -11.51 10.32 -12.27 -0.13 -11.64 16 15 C -0.01 -0.32 10.96 -16.73 -0.18 -0.50 16 16 C 0.06 1.56 5.59 -106.71 -0.60 0.96 16 17 C -0.45 -11.26 9.09 -37.73 -0.34 -11.61 16 18 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 19 C 0.07 1.77 5.19 -17.34 -0.09 1.68 16 20 N -0.79 -19.51 10.90 55.55 0.61 -18.90 16 21 Si 0.91 17.77 29.59 -169.99 -5.03 12.74 16 22 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 23 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 25 C -0.11 -2.75 8.32 -38.23 -0.32 -3.07 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.17 6.98 -51.93 -0.36 0.81 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.15 2.49 8.06 -52.49 -0.42 2.06 16 35 H 0.12 2.56 7.70 -52.48 -0.40 2.16 16 36 H 0.13 2.89 8.06 -52.49 -0.42 2.46 16 37 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 38 H 0.13 3.27 6.19 -52.49 -0.32 2.95 16 LS Contribution 344.30 15.07 5.19 5.19 Total: -1.00 -27.22 344.30 -8.71 -35.94 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -4.45 Total: 7.31 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -3.14 Total: -14.52 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.37 Total: -39.10 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.15 Total: -5.19 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.22 -8.71 -35.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239323388.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.087 kcal (2) G-P(sol) polarization free energy of solvation -27.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds