Wall clock time and date at job start Tue Mar 31 2020 11:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46945 * 2 1 4 4 O 1.42894 * 109.47476 * 119.99978 * 2 1 3 5 5 C 1.35635 * 116.99902 * 89.99855 * 4 2 1 6 6 N 1.32150 * 119.75586 * 0.02562 * 5 4 2 7 7 C 1.31956 * 121.79026 * 180.02562 * 6 5 4 8 8 C 1.38304 * 121.07929 * 359.97438 * 7 6 5 9 9 Cl 1.73597 * 120.30798 * 179.72742 * 8 7 6 10 10 C 1.38639 * 119.38453 * 0.02562 * 8 7 6 11 11 C 1.39557 * 118.36189 * 359.97438 * 10 8 7 12 12 C 1.48348 * 120.55127 * 180.02562 * 11 10 8 13 13 C 1.39747 * 120.41276 * 130.00269 * 12 11 10 14 14 N 1.31909 * 121.14688 * 180.02562 * 13 12 11 15 15 C 1.31523 * 122.12134 * 359.97438 * 14 13 12 16 16 C 1.40776 * 120.67297 * 359.97215 * 15 14 13 17 17 C 1.41438 * 120.60111 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00261 * 335.76252 * 17 16 15 19 19 C 1.39932 * 120.00026 * 155.76169 * 17 16 15 20 20 N 1.30835 * 119.99856 * 343.28599 * 19 17 16 21 21 Si 1.86803 * 120.00287 * 163.28279 * 19 17 16 22 22 H 1.48495 * 109.47019 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47119 * 119.99840 * 21 19 17 24 24 H 1.48499 * 109.47025 * 240.00055 * 21 19 17 25 25 C 1.39167 * 120.41459 * 309.72566 * 12 11 10 26 26 H 1.08996 * 109.47400 * 59.99941 * 1 2 3 27 27 H 1.09002 * 109.46915 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46946 * 299.99757 * 1 2 3 29 29 H 1.09003 * 109.46946 * 240.00243 * 2 1 3 30 30 H 1.09003 * 109.46949 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46716 * 299.99921 * 3 2 1 32 32 H 1.08994 * 109.46928 * 60.00222 * 3 2 1 33 33 H 1.07996 * 119.46087 * 179.97438 * 7 6 5 34 34 H 1.07994 * 120.82445 * 179.97438 * 10 8 7 35 35 H 1.08003 * 119.42774 * 359.97438 * 13 12 11 36 36 H 1.07998 * 119.66317 * 180.02562 * 15 14 13 37 37 H 0.96999 * 119.99957 * 180.02562 * 20 19 17 38 38 H 1.07996 * 120.95423 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.2116 -2.0105 1.0652 6 7 1.9706 -2.6260 -0.0791 7 6 2.1557 -3.9246 -0.2223 8 6 2.6137 -4.7006 0.8270 9 17 2.8435 -6.4086 0.6184 10 6 2.8816 -4.1027 2.0488 11 6 2.6772 -2.7278 2.1731 12 6 2.9488 -2.0381 3.4581 13 6 3.7333 -0.8820 3.4885 14 7 3.9844 -0.2575 4.6229 15 6 3.5146 -0.6842 5.7750 16 6 2.7140 -1.8403 5.8402 17 6 2.2091 -2.2974 7.0798 18 1 2.7142 -2.0363 7.9980 19 6 1.0552 -3.0881 7.1166 20 7 0.2631 -3.1382 6.0764 21 14 0.6455 -4.0720 8.6507 22 1 1.6932 -3.8456 9.6784 23 1 -0.6713 -3.6363 9.1812 24 1 0.5893 -5.5167 8.3118 25 6 2.4208 -2.5311 4.6476 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.9463 -4.3892 -1.1745 34 1 3.2396 -4.6864 2.8838 35 1 4.1418 -0.4936 2.5673 36 1 3.7448 -0.1416 6.6800 37 1 -0.5370 -3.6860 6.1020 38 1 1.8068 -3.4195 4.6568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239323388.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:17 Heat of formation + Delta-G solvation = -10.281944 kcal Electronic energy + Delta-G solvation = -23873.486711 eV Core-core repulsion = 20319.738197 eV Total energy + Delta-G solvation = -3553.748514 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.90922 -40.06390 -39.34387 -37.51837 -35.99037 -34.87497 -34.06735 -32.28858 -31.98400 -30.02008 -28.17428 -27.55606 -25.55685 -24.65835 -23.47143 -22.52699 -22.04135 -19.65285 -19.21341 -18.02701 -17.67405 -17.22227 -16.96696 -16.75220 -16.25081 -15.77953 -15.55334 -15.14461 -14.86684 -14.45943 -14.25852 -14.21132 -13.82887 -13.49199 -13.47710 -13.33755 -13.22051 -13.11800 -13.04555 -12.77298 -12.62972 -12.31160 -12.23656 -11.88189 -11.83866 -11.66880 -11.26540 -11.13161 -10.75120 -10.14717 -10.01854 -9.65745 -9.05032 -8.70911 -6.46538 -0.24631 -0.02100 0.78168 0.95875 1.06056 1.39424 1.49898 1.54975 2.01116 2.17889 2.50992 2.71310 3.12774 3.62151 3.63892 3.67897 3.87756 3.97511 4.03058 4.14198 4.25607 4.34791 4.55388 4.64423 4.68273 4.75521 4.79040 4.83113 4.84124 4.88285 5.08865 5.13175 5.19806 5.24231 5.25799 5.29889 5.73765 5.88278 5.97224 6.23350 6.45157 6.62247 6.73947 6.75379 7.66991 8.22887 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009783 B = 0.005132 C = 0.003927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.411931 B = 5454.138358 C = 7128.860996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.071 3.929 3 C -0.145 4.145 4 O -0.303 6.303 5 C 0.330 3.670 6 N -0.525 5.525 7 C 0.154 3.846 8 C -0.123 4.123 9 Cl -0.043 7.043 10 C -0.029 4.029 11 C -0.099 4.099 12 C -0.074 4.074 13 C -0.008 4.008 14 N -0.480 5.480 15 C -0.034 4.034 16 C 0.038 3.962 17 C -0.478 4.478 18 H 0.088 0.912 19 C 0.037 3.963 20 N -0.819 5.819 21 Si 0.985 3.015 22 H -0.254 1.254 23 H -0.267 1.267 24 H -0.264 1.264 25 C -0.132 4.132 26 H 0.100 0.900 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.053 0.947 33 H 0.204 0.796 34 H 0.146 0.854 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.291 0.709 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.641 -3.072 -12.983 13.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.015 3.985 3 C -0.202 4.202 4 O -0.210 6.210 5 C 0.151 3.849 6 N -0.248 5.248 7 C -0.003 4.003 8 C -0.152 4.152 9 Cl -0.014 7.014 10 C -0.055 4.055 11 C -0.103 4.103 12 C -0.077 4.077 13 C -0.166 4.166 14 N -0.187 5.187 15 C -0.194 4.194 16 C 0.034 3.966 17 C -0.507 4.507 18 H 0.106 0.894 19 C -0.179 4.179 20 N -0.444 5.444 21 Si 0.805 3.195 22 H -0.177 1.177 23 H -0.192 1.192 24 H -0.188 1.188 25 C -0.158 4.158 26 H 0.118 0.882 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.125 0.875 32 H 0.072 0.928 33 H 0.220 0.780 34 H 0.164 0.836 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.102 0.898 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.602 -1.834 -13.590 13.726 hybrid contribution -0.592 -1.666 1.423 2.270 sum -1.194 -3.500 -12.167 12.716 Atomic orbital electron populations 1.22185 0.94394 1.02104 1.03311 1.22680 0.94994 0.93734 0.87078 1.21912 1.01868 0.92705 1.03746 1.86473 1.79339 1.15327 1.39837 1.19901 0.90748 0.85304 0.88899 1.67450 1.22207 1.11959 1.23203 1.22912 0.91697 0.86796 0.98898 1.21682 1.09677 0.87605 0.96254 1.98358 1.95762 1.10042 1.97259 1.21501 0.94588 0.92277 0.97117 1.18823 1.05334 0.93013 0.93166 1.19250 0.99659 0.97232 0.91590 1.21918 1.03925 0.95735 0.95060 1.66957 1.20874 1.31728 0.99137 1.22730 1.04969 0.96881 0.94863 1.18767 0.91901 0.91312 0.94604 1.19847 1.08931 1.28177 0.93737 0.89436 1.26817 0.94444 0.95453 1.01172 1.69851 1.10547 1.31612 1.32426 0.85100 0.79003 0.77988 0.77366 1.17748 1.19155 1.18813 1.21721 1.02021 1.00733 0.91278 0.88177 0.93541 0.93225 0.88814 0.92081 0.87523 0.92753 0.77975 0.83579 0.85015 0.84574 0.89826 0.86329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 9.53 71.98 0.69 -3.37 16 2 C 0.07 1.92 3.11 30.60 0.10 2.01 16 3 C -0.15 -3.27 9.56 71.98 0.69 -2.58 16 4 O -0.30 -11.08 8.15 -89.49 -0.73 -11.81 16 5 C 0.33 11.96 7.39 85.06 0.63 12.59 16 6 N -0.52 -15.81 8.64 -308.09 -2.66 -18.47 16 7 C 0.15 3.88 10.97 84.69 0.93 4.81 16 8 C -0.12 -3.40 6.34 22.38 0.14 -3.25 16 9 Cl -0.04 -0.99 28.98 -2.72 -0.08 -1.07 16 10 C -0.03 -1.00 9.49 22.68 0.22 -0.78 16 11 C -0.10 -3.94 5.51 -19.85 -0.11 -4.05 16 12 C -0.07 -3.50 5.29 -20.00 -0.11 -3.61 16 13 C -0.01 -0.40 9.98 85.05 0.85 0.45 16 14 N -0.48 -24.26 10.32 -192.74 -1.99 -26.25 16 15 C -0.03 -1.75 10.96 85.36 0.94 -0.82 16 16 C 0.04 2.05 5.59 -21.22 -0.12 1.93 16 17 C -0.48 -24.64 9.09 23.47 0.21 -24.43 16 18 H 0.09 4.29 7.90 -2.91 -0.02 4.27 16 19 C 0.04 1.79 5.19 85.25 0.44 2.23 16 20 N -0.82 -41.24 10.90 21.82 0.24 -41.00 16 21 Si 0.99 36.32 29.59 68.60 2.03 38.35 16 22 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 23 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 24 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 25 C -0.13 -6.79 8.32 23.15 0.19 -6.59 16 26 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 2.38 6.98 -2.39 -0.02 2.36 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.20 3.41 8.06 -2.91 -0.02 3.39 16 34 H 0.15 4.95 8.06 -2.91 -0.02 4.93 16 35 H 0.13 5.82 7.70 -2.91 -0.02 5.79 16 36 H 0.14 6.49 8.06 -2.91 -0.02 6.46 16 37 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 38 H 0.12 6.28 6.19 -2.91 -0.02 6.27 16 Total: -1.00 -60.48 344.30 3.58 -56.91 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 1.08 Total: 28.80 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: 5.68 Total: -25.46 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -4.41 Total: -85.72 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -0.73 Total: -11.81 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -60.48 3.58 -56.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239323388.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.625 kcal (2) G-P(sol) polarization free energy of solvation -60.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds