Wall clock time and date at job start Tue Mar 31 2020 11:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47049 * 2 1 4 4 O 1.42898 * 109.47254 * 119.99939 * 2 1 3 5 5 C 1.35556 * 116.99820 * 90.00258 * 4 2 1 6 6 N 1.32131 * 119.78461 * 0.02562 * 5 4 2 7 7 C 1.31969 * 121.81550 * 180.02562 * 6 5 4 8 8 C 1.38446 * 121.16859 * 359.97432 * 7 6 5 9 9 Cl 1.73599 * 120.28817 * 180.02562 * 8 7 6 10 10 C 1.38487 * 119.42733 * 359.76690 * 8 7 6 11 11 C 1.39944 * 118.33706 * 0.47971 * 10 8 7 12 12 C 1.47689 * 120.59071 * 179.80484 * 11 10 8 13 13 C 1.39405 * 120.79829 * 64.71244 * 12 11 10 14 14 N 1.31638 * 120.65207 * 179.97438 * 13 12 11 15 15 C 1.32233 * 122.51382 * 359.97438 * 14 13 12 16 16 C 1.36440 * 121.53022 * 0.02562 * 15 14 13 17 17 C 1.41133 * 119.11767 * 359.97438 * 16 15 14 18 18 C 1.40874 * 121.11466 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00138 * 204.39983 * 18 17 16 20 20 C 1.40156 * 119.99839 * 24.39960 * 18 17 16 21 21 N 1.30696 * 120.00483 * 14.09128 * 20 18 17 22 22 Si 1.86808 * 119.99835 * 194.09092 * 20 18 17 23 23 H 1.48498 * 109.47166 * 95.00804 * 22 20 18 24 24 H 1.48503 * 109.47003 * 215.00454 * 22 20 18 25 25 H 1.48498 * 109.47178 * 335.00254 * 22 20 18 26 26 H 1.09000 * 109.47098 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47237 * 299.99989 * 1 2 3 28 28 H 1.08994 * 109.47634 * 59.99704 * 1 2 3 29 29 H 1.08997 * 109.47301 * 240.00063 * 2 1 3 30 30 H 1.08997 * 109.46992 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46828 * 300.00185 * 3 2 1 32 32 H 1.08998 * 109.46563 * 60.00163 * 3 2 1 33 33 H 1.08001 * 119.41392 * 179.97438 * 7 6 5 34 34 H 1.07999 * 120.83231 * 180.25420 * 10 8 7 35 35 H 1.08005 * 119.67426 * 359.95691 * 13 12 11 36 36 H 1.08000 * 119.23421 * 180.02562 * 15 14 13 37 37 H 1.08008 * 120.44110 * 179.72709 * 16 15 14 38 38 H 0.97002 * 120.00769 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2115 -2.0097 1.0653 6 7 1.9707 -2.6257 -0.0786 7 6 2.1560 -3.9245 -0.2218 8 6 2.6143 -4.7029 0.8274 9 17 2.8506 -6.4093 0.6134 10 6 2.8878 -4.1075 2.0475 11 6 2.6783 -2.7299 2.1761 12 6 2.9496 -2.0447 3.4561 13 6 4.2446 -1.9738 3.9673 14 7 4.4832 -1.3619 5.1081 15 6 3.5278 -0.7899 5.8212 16 6 2.2267 -0.8020 5.4108 17 6 1.8955 -1.4401 4.1963 18 6 0.5659 -1.4774 3.7324 19 1 0.2511 -2.2596 3.0576 20 6 -0.3485 -0.4993 4.1467 21 7 0.0787 0.5897 4.7296 22 14 -2.1779 -0.7521 3.8658 23 1 -2.7902 -1.3353 5.0866 24 1 -2.8179 0.5541 3.5667 25 1 -2.3799 -1.6760 2.7209 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.9464 -4.3883 -1.1744 34 1 3.2502 -4.6924 2.8799 35 1 5.0601 -2.4256 3.4221 36 1 3.7834 -0.3018 6.7501 37 1 1.4596 -0.3330 6.0094 38 1 -0.5541 1.2666 5.0167 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239323512.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:41 Heat of formation + Delta-G solvation = 7.660503 kcal Electronic energy + Delta-G solvation = -24713.946274 eV Core-core repulsion = 21160.975803 eV Total energy + Delta-G solvation = -3552.970471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.26836 -38.24082 -37.76745 -36.20101 -34.25721 -33.13654 -32.57672 -30.66350 -29.98762 -28.34607 -26.93613 -26.05362 -23.87633 -22.99157 -21.57169 -20.88696 -20.45705 -18.01443 -17.65769 -16.52931 -16.05190 -15.70661 -15.14673 -14.61297 -14.50385 -14.32892 -14.07612 -13.67665 -13.28574 -12.80357 -12.79039 -12.58579 -12.31263 -12.19540 -12.11030 -11.96336 -11.76292 -11.49143 -11.33963 -11.31685 -11.12388 -10.99255 -10.51177 -10.40832 -10.25933 -10.00429 -9.58858 -9.32616 -9.29487 -8.18054 -8.04952 -7.79548 -7.44309 -6.92483 -4.67763 1.41717 1.57129 2.31979 2.63028 2.76125 2.94123 2.97640 3.18456 3.57568 3.75473 4.10044 4.56864 4.61209 5.10659 5.20312 5.32362 5.33488 5.42213 5.56873 5.60623 5.77016 5.82590 6.01485 6.06067 6.08661 6.13880 6.23650 6.32532 6.38602 6.47781 6.57646 6.78272 6.80829 6.83580 7.07510 7.27239 7.42440 7.72863 7.84083 8.01116 8.21813 8.35487 8.62045 8.66629 9.56815 9.93534 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009886 B = 0.006311 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.496935 B = 4435.762097 C = 5198.783511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.081 3.919 3 C -0.148 4.148 4 O -0.258 6.258 5 C 0.343 3.657 6 N -0.535 5.535 7 C 0.129 3.871 8 C -0.127 4.127 9 Cl -0.077 7.077 10 C -0.048 4.048 11 C -0.027 4.027 12 C -0.231 4.231 13 C 0.134 3.866 14 N -0.578 5.578 15 C 0.082 3.918 16 C -0.207 4.207 17 C 0.155 3.845 18 C -0.422 4.422 19 H 0.075 0.925 20 C 0.083 3.917 21 N -0.773 5.773 22 Si 0.901 3.099 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.259 1.259 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.157 0.843 34 H 0.143 0.857 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.129 0.871 38 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 -3.200 -8.145 8.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.024 3.976 3 C -0.206 4.206 4 O -0.162 6.162 5 C 0.163 3.837 6 N -0.259 5.259 7 C -0.027 4.027 8 C -0.157 4.157 9 Cl -0.049 7.049 10 C -0.073 4.073 11 C -0.031 4.031 12 C -0.238 4.238 13 C -0.025 4.025 14 N -0.293 5.293 15 C -0.066 4.066 16 C -0.229 4.229 17 C 0.147 3.853 18 C -0.452 4.452 19 H 0.094 0.906 20 C -0.138 4.138 21 N -0.397 5.397 22 Si 0.724 3.276 23 H -0.190 1.190 24 H -0.198 1.198 25 H -0.183 1.183 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.174 0.826 34 H 0.161 0.839 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.146 0.854 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.079 -2.326 -8.168 8.493 hybrid contribution -1.627 -0.700 0.010 1.771 sum -1.706 -3.026 -8.158 8.867 Atomic orbital electron populations 1.22177 0.95297 1.02704 1.02091 1.22241 0.94351 0.92798 0.88199 1.21860 1.01643 0.94414 1.02640 1.86580 1.78370 1.14809 1.36489 1.20228 0.89936 0.85211 0.88359 1.67312 1.22519 1.10999 1.25109 1.22116 0.95317 0.87707 0.97574 1.21642 1.11093 0.85635 0.97299 1.98325 1.95943 1.13170 1.97414 1.21507 0.96807 0.93174 0.95796 1.18612 1.00151 0.91037 0.93306 1.19072 0.94720 1.14243 0.95745 1.22024 0.93284 0.95164 0.91996 1.67310 1.36701 1.16463 1.08805 1.21709 0.90105 0.96929 0.97807 1.21949 0.96656 1.06216 0.98042 1.17624 0.91834 0.86656 0.89180 1.19398 0.93555 1.09203 1.23046 0.90640 1.25930 1.01428 0.93862 0.92623 1.69737 1.37247 1.05091 1.27631 0.86390 0.81759 0.79185 0.80222 1.19011 1.19796 1.18263 0.92185 0.91615 0.92012 0.90102 0.92161 0.91215 0.91304 0.82626 0.83893 0.86368 0.86492 0.85355 0.90462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.66 9.53 37.15 0.35 -2.31 16 2 C 0.08 1.36 3.11 -26.73 -0.08 1.28 16 3 C -0.15 -2.17 9.56 37.16 0.36 -1.82 16 4 O -0.26 -5.38 8.41 -18.36 -0.15 -5.54 16 5 C 0.34 6.91 6.84 -16.62 -0.11 6.79 16 6 N -0.54 -9.57 8.64 -12.91 -0.11 -9.68 16 7 C 0.13 2.01 10.97 -17.42 -0.19 1.82 16 8 C -0.13 -2.00 6.33 -39.41 -0.25 -2.25 16 9 Cl -0.08 -1.03 28.98 -51.86 -1.50 -2.53 16 10 C -0.05 -0.84 9.70 -38.85 -0.38 -1.22 16 11 C -0.03 -0.55 4.50 -104.59 -0.47 -1.02 16 12 C -0.23 -5.33 5.03 -104.05 -0.52 -5.85 16 13 C 0.13 3.03 10.93 -17.20 -0.19 2.84 16 14 N -0.58 -13.71 10.32 -13.35 -0.14 -13.85 16 15 C 0.08 1.91 11.08 -18.03 -0.20 1.71 16 16 C -0.21 -5.09 8.72 -39.13 -0.34 -5.43 16 17 C 0.15 3.86 5.46 -106.25 -0.58 3.28 16 18 C -0.42 -10.33 7.57 -37.87 -0.29 -10.62 16 19 H 0.08 1.88 7.19 -52.48 -0.38 1.50 16 20 C 0.08 1.92 5.25 -17.32 -0.09 1.83 16 21 N -0.77 -18.33 10.80 55.56 0.60 -17.73 16 22 Si 0.90 17.73 29.58 -169.99 -5.03 12.70 16 23 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 24 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 25 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.30 6.98 -51.93 -0.36 0.94 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.14 2.36 8.06 -52.49 -0.42 1.93 16 35 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 36 H 0.12 2.43 8.06 -52.49 -0.42 2.00 16 37 H 0.13 3.20 6.14 -52.48 -0.32 2.88 16 38 H 0.28 6.13 8.29 -40.82 -0.34 5.79 16 LS Contribution 342.32 15.07 5.16 5.16 Total: -1.00 -26.44 342.32 -8.59 -35.03 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -4.42 Total: 7.42 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -2.99 Total: -10.98 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.35 Total: -41.26 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.15 Total: -5.54 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.50 Total: -2.53 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -26.44 -8.59 -35.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239323512.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.690 kcal (2) G-P(sol) polarization free energy of solvation -26.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds