Wall clock time and date at job start Tue Mar 31 2020 11:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47049 * 2 1 4 4 O 1.42898 * 109.47254 * 119.99939 * 2 1 3 5 5 C 1.35556 * 116.99820 * 90.00258 * 4 2 1 6 6 N 1.32131 * 119.78461 * 0.02562 * 5 4 2 7 7 C 1.31969 * 121.81550 * 180.02562 * 6 5 4 8 8 C 1.38446 * 121.16859 * 359.97432 * 7 6 5 9 9 Cl 1.73599 * 120.28817 * 180.02562 * 8 7 6 10 10 C 1.38487 * 119.42733 * 359.76690 * 8 7 6 11 11 C 1.39944 * 118.33706 * 0.47971 * 10 8 7 12 12 C 1.47689 * 120.59071 * 179.80484 * 11 10 8 13 13 C 1.39405 * 120.79829 * 64.71244 * 12 11 10 14 14 N 1.31638 * 120.65207 * 179.97438 * 13 12 11 15 15 C 1.32233 * 122.51382 * 359.97438 * 14 13 12 16 16 C 1.36440 * 121.53022 * 0.02562 * 15 14 13 17 17 C 1.41133 * 119.11767 * 359.97438 * 16 15 14 18 18 C 1.40874 * 121.11466 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00138 * 204.39983 * 18 17 16 20 20 C 1.40156 * 119.99839 * 24.39960 * 18 17 16 21 21 N 1.30696 * 120.00483 * 14.09128 * 20 18 17 22 22 Si 1.86808 * 119.99835 * 194.09092 * 20 18 17 23 23 H 1.48498 * 109.47166 * 95.00804 * 22 20 18 24 24 H 1.48503 * 109.47003 * 215.00454 * 22 20 18 25 25 H 1.48498 * 109.47178 * 335.00254 * 22 20 18 26 26 H 1.09000 * 109.47098 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47237 * 299.99989 * 1 2 3 28 28 H 1.08994 * 109.47634 * 59.99704 * 1 2 3 29 29 H 1.08997 * 109.47301 * 240.00063 * 2 1 3 30 30 H 1.08997 * 109.46992 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.46828 * 300.00185 * 3 2 1 32 32 H 1.08998 * 109.46563 * 60.00163 * 3 2 1 33 33 H 1.08001 * 119.41392 * 179.97438 * 7 6 5 34 34 H 1.07999 * 120.83231 * 180.25420 * 10 8 7 35 35 H 1.08005 * 119.67426 * 359.95691 * 13 12 11 36 36 H 1.08000 * 119.23421 * 180.02562 * 15 14 13 37 37 H 1.08008 * 120.44110 * 179.72709 * 16 15 14 38 38 H 0.97002 * 120.00769 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2115 -2.0097 1.0653 6 7 1.9707 -2.6257 -0.0786 7 6 2.1560 -3.9245 -0.2218 8 6 2.6143 -4.7029 0.8274 9 17 2.8506 -6.4093 0.6134 10 6 2.8878 -4.1075 2.0475 11 6 2.6783 -2.7299 2.1761 12 6 2.9496 -2.0447 3.4561 13 6 4.2446 -1.9738 3.9673 14 7 4.4832 -1.3619 5.1081 15 6 3.5278 -0.7899 5.8212 16 6 2.2267 -0.8020 5.4108 17 6 1.8955 -1.4401 4.1963 18 6 0.5659 -1.4774 3.7324 19 1 0.2511 -2.2596 3.0576 20 6 -0.3485 -0.4993 4.1467 21 7 0.0787 0.5897 4.7296 22 14 -2.1779 -0.7521 3.8658 23 1 -2.7902 -1.3353 5.0866 24 1 -2.8179 0.5541 3.5667 25 1 -2.3799 -1.6760 2.7209 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.9464 -4.3883 -1.1744 34 1 3.2502 -4.6924 2.8799 35 1 5.0601 -2.4256 3.4221 36 1 3.7834 -0.3018 6.7501 37 1 1.4596 -0.3330 6.0094 38 1 -0.5541 1.2666 5.0167 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239323512.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:40 Heat of formation + Delta-G solvation = -6.059478 kcal Electronic energy + Delta-G solvation = -24714.541217 eV Core-core repulsion = 21160.975803 eV Total energy + Delta-G solvation = -3553.565414 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.69103 -39.98734 -39.15272 -37.40602 -36.04482 -34.61938 -33.92988 -32.33275 -31.59686 -29.91839 -28.18763 -27.83243 -25.32660 -24.45375 -23.36069 -22.38043 -21.94647 -19.51608 -19.34488 -17.92440 -17.55952 -17.33037 -16.63221 -16.26918 -16.04402 -15.94172 -15.42445 -15.09061 -14.67966 -14.44665 -14.16763 -14.15474 -14.06494 -13.63604 -13.44064 -13.19812 -13.17149 -13.04985 -12.95891 -12.80542 -12.55233 -12.19347 -12.03835 -11.80970 -11.78566 -11.56553 -11.31065 -10.78299 -10.71544 -9.87472 -9.86260 -9.51668 -9.01702 -8.66559 -6.51450 0.01982 0.17664 0.86247 0.99295 1.13219 1.31626 1.42015 1.50433 2.11475 2.23172 2.69808 2.77473 3.29845 3.69724 3.82399 3.87036 3.96900 4.05451 4.07350 4.15588 4.30327 4.46647 4.68024 4.73243 4.73617 4.83941 4.85140 4.90728 4.94485 5.03992 5.04326 5.22976 5.27034 5.28840 5.38084 5.47859 5.59939 5.90575 6.19513 6.45268 6.52217 6.80111 6.80577 6.87423 7.74061 8.20888 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009886 B = 0.006311 C = 0.005385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.496935 B = 4435.762097 C = 5198.783511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.073 3.927 3 C -0.142 4.142 4 O -0.289 6.289 5 C 0.330 3.670 6 N -0.536 5.536 7 C 0.140 3.860 8 C -0.124 4.124 9 Cl -0.049 7.049 10 C -0.041 4.041 11 C -0.063 4.063 12 C -0.226 4.226 13 C 0.122 3.878 14 N -0.590 5.590 15 C 0.077 3.923 16 C -0.228 4.228 17 C 0.129 3.871 18 C -0.435 4.435 19 H 0.064 0.936 20 C 0.051 3.949 21 N -0.798 5.798 22 Si 0.959 3.041 23 H -0.259 1.259 24 H -0.261 1.261 25 H -0.263 1.263 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.046 0.954 33 H 0.194 0.806 34 H 0.151 0.849 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.118 0.882 38 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.159 -4.233 -10.141 11.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.017 3.983 3 C -0.199 4.199 4 O -0.195 6.195 5 C 0.151 3.849 6 N -0.261 5.261 7 C -0.017 4.017 8 C -0.154 4.154 9 Cl -0.020 7.020 10 C -0.067 4.067 11 C -0.067 4.067 12 C -0.232 4.232 13 C -0.035 4.035 14 N -0.305 5.305 15 C -0.071 4.071 16 C -0.251 4.251 17 C 0.122 3.878 18 C -0.465 4.465 19 H 0.082 0.918 20 C -0.168 4.168 21 N -0.422 5.422 22 Si 0.780 3.220 23 H -0.183 1.183 24 H -0.185 1.185 25 H -0.187 1.187 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.066 0.934 33 H 0.211 0.789 34 H 0.168 0.832 35 H 0.159 0.841 36 H 0.156 0.844 37 H 0.136 0.864 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.621 -3.360 -10.169 10.728 hybrid contribution -1.388 -0.502 0.516 1.564 sum -2.009 -3.862 -9.653 10.589 Atomic orbital electron populations 1.22129 0.94893 1.01867 1.02646 1.22531 0.94755 0.93559 0.87453 1.21865 1.01504 0.93253 1.03297 1.86541 1.78806 1.15540 1.38619 1.20256 0.90476 0.85213 0.88939 1.67382 1.22565 1.12037 1.24072 1.22784 0.93140 0.86937 0.98841 1.21644 1.10105 0.87145 0.96491 1.98340 1.95739 1.10681 1.97255 1.21595 0.95918 0.92227 0.96918 1.18603 1.03110 0.92283 0.92685 1.19295 0.94320 1.13182 0.96438 1.22415 0.94033 0.95090 0.91971 1.67363 1.36746 1.16931 1.09434 1.22013 0.89736 0.96751 0.98555 1.21943 0.97042 1.07572 0.98501 1.17969 0.92792 0.87436 0.89645 1.19366 0.94047 1.09531 1.23577 0.91816 1.26568 1.04861 0.93236 0.92117 1.69768 1.38758 1.05652 1.28059 0.85528 0.77131 0.79405 0.79980 1.18348 1.18539 1.18700 0.93644 0.93848 0.88525 0.89176 0.92368 0.87620 0.93446 0.78893 0.83164 0.84117 0.84356 0.86374 0.89671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.97 9.53 71.98 0.69 -4.29 16 2 C 0.07 2.42 3.11 30.59 0.10 2.52 16 3 C -0.14 -4.06 9.56 71.98 0.69 -3.37 16 4 O -0.29 -12.29 8.41 -88.62 -0.75 -13.04 16 5 C 0.33 13.30 6.84 85.17 0.58 13.88 16 6 N -0.54 -18.39 8.64 -307.74 -2.66 -21.05 16 7 C 0.14 3.97 10.97 84.72 0.93 4.90 16 8 C -0.12 -3.63 6.33 22.38 0.14 -3.49 16 9 Cl -0.05 -1.16 28.98 -2.72 -0.08 -1.24 16 10 C -0.04 -1.41 9.70 22.74 0.22 -1.19 16 11 C -0.06 -2.59 4.50 -19.85 -0.09 -2.68 16 12 C -0.23 -10.65 5.03 -19.49 -0.10 -10.75 16 13 C 0.12 5.58 10.93 85.00 0.93 6.51 16 14 N -0.59 -28.26 10.32 -196.16 -2.02 -30.28 16 15 C 0.08 3.69 11.08 84.21 0.93 4.62 16 16 C -0.23 -11.66 8.72 22.56 0.20 -11.46 16 17 C 0.13 6.66 5.46 -20.92 -0.11 6.55 16 18 C -0.44 -21.99 7.57 23.38 0.18 -21.81 16 19 H 0.06 3.28 7.19 -2.91 -0.02 3.26 16 20 C 0.05 2.42 5.25 85.33 0.45 2.87 16 21 N -0.80 -38.83 10.80 21.86 0.24 -38.59 16 22 Si 0.96 36.55 29.58 68.60 2.03 38.58 16 23 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 24 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 25 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 26 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.09 2.78 6.98 -2.39 -0.02 2.76 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.19 3.98 8.06 -2.91 -0.02 3.95 16 34 H 0.15 4.82 8.06 -2.91 -0.02 4.79 16 35 H 0.14 5.61 8.06 -2.91 -0.02 5.59 16 36 H 0.14 5.80 8.06 -2.91 -0.02 5.78 16 37 H 0.12 6.16 6.14 -2.91 -0.02 6.15 16 38 H 0.29 12.83 8.29 -92.71 -0.77 12.06 16 Total: -1.00 -58.34 342.32 3.57 -54.76 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 1.09 Total: 28.06 kcal Atomic # 6 Polarization: -22.92 SS G_CDS: 5.73 Total: -17.19 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -4.45 Total: -89.93 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.75 Total: -13.04 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -58.34 3.57 -54.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239323512.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.704 kcal (2) G-P(sol) polarization free energy of solvation -58.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds