Wall clock time and date at job start Tue Mar 31 2020 12:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34837 * 116.99916 * 2 1 4 4 O 1.21547 * 120.00152 * 0.02562 * 3 2 1 5 5 C 1.47118 * 119.99680 * 180.02562 * 3 2 1 6 6 C 1.39539 * 120.44807 * 355.99564 * 5 3 2 7 7 C 1.37792 * 120.19617 * 179.97438 * 6 5 3 8 8 C 1.39771 * 121.15445 * 0.02562 * 7 6 5 9 9 C 1.48217 * 119.54873 * 179.97438 * 8 7 6 10 10 C 1.39607 * 120.15192 * 244.71658 * 9 8 7 11 11 F 1.35097 * 120.07680 * 0.02562 * 10 9 8 12 12 C 1.38248 * 119.84095 * 179.78852 * 10 9 8 13 13 C 1.38304 * 120.15530 * 0.46700 * 12 10 9 14 14 C 1.38297 * 120.31185 * 359.78764 * 13 12 10 15 15 C 1.38251 * 120.15639 * 359.97438 * 14 13 12 16 16 F 1.35102 * 120.07888 * 179.97438 * 15 14 13 17 17 C 1.38776 * 120.90130 * 0.24736 * 8 7 6 18 18 C 1.40533 * 119.72842 * 359.50181 * 17 8 7 19 19 C 1.40922 * 120.54804 * 180.22603 * 18 17 8 20 20 H 1.07999 * 119.99874 * 213.24479 * 19 18 17 21 21 C 1.40276 * 119.99842 * 33.23732 * 19 18 17 22 22 N 1.30625 * 119.99898 * 9.36404 * 21 19 18 23 23 Si 1.86799 * 119.99952 * 189.35807 * 21 19 18 24 24 H 1.48495 * 109.46897 * 60.00359 * 23 21 19 25 25 H 1.48500 * 109.47304 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47238 * 300.00331 * 23 21 19 27 27 H 1.08996 * 109.47353 * 59.99565 * 1 2 3 28 28 H 1.09001 * 109.47263 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46640 * 299.99638 * 1 2 3 30 30 H 1.07997 * 119.90070 * 359.97438 * 6 5 3 31 31 H 1.07998 * 119.42314 * 179.97438 * 7 6 5 32 32 H 1.08002 * 119.92286 * 180.25884 * 12 10 9 33 33 H 1.08001 * 119.83961 * 179.76359 * 13 12 10 34 34 H 1.07999 * 119.92144 * 179.97438 * 14 13 12 35 35 H 1.07995 * 120.13767 * 179.72377 * 17 8 7 36 36 H 0.96997 * 119.99558 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2014 0.0000 4 8 1.4021 2.2208 0.0005 5 6 3.5333 1.2783 -0.0006 6 6 4.3022 0.1169 0.0829 7 6 5.6779 0.1950 0.0814 8 6 6.3322 1.4273 -0.0024 9 6 7.8138 1.4699 -0.0005 10 6 8.4964 2.0801 1.0534 11 9 7.8081 2.6335 2.0757 12 6 9.8785 2.1123 1.0507 13 6 10.5846 1.5504 0.0026 14 6 9.9147 0.9490 -1.0472 15 6 8.5329 0.9051 -1.0554 16 9 7.8801 0.3176 -2.0820 17 6 5.6135 2.6118 -0.0816 18 6 4.2087 2.5755 -0.0884 19 6 3.4618 3.7675 -0.1731 20 1 2.5089 3.8445 0.3294 21 6 3.9561 4.8540 -0.9099 22 7 5.0118 4.7052 -1.6646 23 14 3.1044 6.5137 -0.8120 24 1 3.1200 6.9959 0.5924 25 1 3.8165 7.4874 -1.6781 26 1 1.6993 6.3770 -1.2730 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 3.8177 -0.8460 0.1488 31 1 6.2609 -0.7118 0.1469 32 1 10.4081 2.5803 1.8674 33 1 11.6641 1.5818 0.0039 34 1 10.4723 0.5125 -1.8627 35 1 6.1317 3.5574 -0.1414 36 1 5.3533 5.4564 -2.1743 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239575492.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:37 Heat of formation + Delta-G solvation = -132.485287 kcal Electronic energy + Delta-G solvation = -25942.477453 eV Core-core repulsion = 21799.340373 eV Total energy + Delta-G solvation = -4143.137080 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.55670 -48.53699 -39.25534 -38.61171 -37.05981 -35.25813 -33.97241 -32.03908 -30.11370 -29.83234 -28.76859 -27.00992 -25.54401 -23.59821 -22.51252 -21.43216 -21.05523 -19.57717 -17.92094 -17.48088 -16.77236 -16.59257 -15.97107 -15.85718 -15.49275 -15.35070 -15.25978 -15.11801 -14.85477 -14.18559 -14.02770 -13.63033 -13.39682 -12.87376 -12.58391 -12.50356 -12.47872 -11.88986 -11.81194 -11.69066 -11.67628 -11.41561 -11.22355 -11.09227 -10.74243 -10.60591 -10.33416 -9.96846 -9.88143 -9.44991 -8.87896 -8.66441 -8.54231 -7.63474 -7.44866 -7.01593 -4.60159 1.14603 1.19811 2.02545 2.74584 2.99358 3.04592 3.14643 3.56165 3.74254 3.80540 3.83339 4.17551 4.46934 4.66927 4.82146 5.03645 5.06761 5.29922 5.42090 5.60052 5.67828 5.83581 5.93155 6.05125 6.14169 6.18406 6.21542 6.24014 6.30029 6.42948 6.80070 6.89170 6.96850 7.00276 7.21894 7.37784 7.52542 7.76337 7.77047 7.95967 8.43365 8.56925 8.65384 9.07396 9.91063 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.011451 B = 0.005285 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.633568 B = 5297.141613 C = 6805.578511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.374 6.374 3 C 0.504 3.496 4 O -0.521 6.521 5 C -0.257 4.257 6 C -0.026 4.026 7 C -0.231 4.231 8 C -0.034 4.034 9 C -0.087 4.087 10 C 0.135 3.865 11 F -0.124 7.124 12 C -0.170 4.170 13 C -0.076 4.076 14 C -0.170 4.170 15 C 0.138 3.862 16 F -0.124 7.124 17 C -0.119 4.119 18 C 0.148 3.852 19 C -0.405 4.405 20 H 0.113 0.887 21 C 0.067 3.933 22 N -0.776 5.776 23 Si 0.922 3.078 24 H -0.259 1.259 25 H -0.276 1.276 26 H -0.259 1.259 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.124 0.876 36 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.556 -4.371 1.873 8.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.292 6.292 3 C 0.355 3.645 4 O -0.413 6.413 5 C -0.260 4.260 6 C -0.044 4.044 7 C -0.250 4.250 8 C -0.034 4.034 9 C -0.088 4.088 10 C 0.116 3.884 11 F -0.102 7.102 12 C -0.189 4.189 13 C -0.094 4.094 14 C -0.189 4.189 15 C 0.118 3.882 16 F -0.102 7.102 17 C -0.138 4.138 18 C 0.144 3.856 19 C -0.432 4.432 20 H 0.131 0.869 21 C -0.154 4.154 22 N -0.399 5.399 23 Si 0.745 3.255 24 H -0.184 1.184 25 H -0.201 1.201 26 H -0.183 1.183 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.141 0.859 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.422 -3.945 1.694 8.574 hybrid contribution -0.689 0.706 -0.191 1.005 sum 6.733 -3.239 1.503 7.621 Atomic orbital electron populations 1.22970 0.78635 1.02024 1.01732 1.86589 1.21494 1.34983 1.86160 1.21237 0.89473 0.80203 0.73549 1.90701 1.66945 1.35249 1.48388 1.19733 0.86880 0.94076 1.25313 1.20682 0.93091 0.96230 0.94440 1.20066 0.93732 0.94939 1.16261 1.18208 0.87916 0.94838 1.02484 1.19192 0.95438 1.00352 0.93852 1.17485 0.89232 0.96135 0.85589 1.91543 1.79850 1.82511 1.56290 1.21072 0.91868 1.04556 1.01407 1.20719 0.99979 0.96343 0.92364 1.21070 0.92084 1.04477 1.01309 1.17462 0.89565 0.95889 0.85293 1.91539 1.81649 1.81010 1.55983 1.21318 0.93432 0.95722 1.03288 1.18326 0.90919 0.90236 0.86155 1.20376 1.05399 0.94494 1.22909 0.86910 1.26270 0.94219 1.01493 0.93444 1.69700 1.18750 1.33632 1.17832 0.86108 0.80480 0.79191 0.79676 1.18367 1.20121 1.18347 0.92763 0.89435 0.92835 0.87490 0.88736 0.84437 0.84481 0.84450 0.85871 0.90062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.57 101.05 1.07 1.72 16 2 O -0.37 -7.74 9.84 -40.87 -0.40 -8.15 16 3 C 0.50 12.29 7.87 34.33 0.27 12.56 16 4 O -0.52 -13.64 13.47 -19.30 -0.26 -13.90 16 5 C -0.26 -6.50 6.07 -102.48 -0.62 -7.12 16 6 C -0.03 -0.59 9.60 -39.26 -0.38 -0.97 16 7 C -0.23 -5.11 9.45 -39.17 -0.37 -5.48 16 8 C -0.03 -0.77 4.72 -105.02 -0.50 -1.26 16 9 C -0.09 -1.68 5.28 -104.78 -0.55 -2.24 16 10 C 0.14 2.35 7.23 -39.07 -0.28 2.07 16 11 F -0.12 -2.35 16.63 2.25 0.04 -2.32 16 12 C -0.17 -2.24 10.01 -39.55 -0.40 -2.64 16 13 C -0.08 -0.86 10.03 -39.54 -0.40 -1.26 16 14 C -0.17 -2.24 10.01 -39.55 -0.40 -2.64 16 15 C 0.14 2.39 7.23 -39.07 -0.28 2.10 16 16 F -0.12 -2.34 16.66 2.25 0.04 -2.30 16 17 C -0.12 -3.01 8.06 -38.52 -0.31 -3.32 16 18 C 0.15 3.95 5.66 -104.68 -0.59 3.36 16 19 C -0.41 -10.87 7.96 -37.80 -0.30 -11.17 16 20 H 0.11 3.11 5.76 -52.49 -0.30 2.81 16 21 C 0.07 1.66 5.26 -17.30 -0.09 1.57 16 22 N -0.78 -19.45 11.10 55.56 0.62 -18.83 16 23 Si 0.92 18.90 29.57 -169.99 -5.03 13.87 16 24 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 25 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 26 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.11 2.17 7.62 -52.49 -0.40 1.77 16 31 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.12 3.20 6.55 -52.49 -0.34 2.86 16 36 H 0.29 6.54 8.29 -40.82 -0.34 6.20 16 LS Contribution 328.45 15.07 4.95 4.95 Total: -1.00 -29.69 328.45 -7.31 -37.01 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -3.14 Total: 4.38 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -4.13 Total: -14.72 kcal Atomic # 7 Polarization: -19.45 SS G_CDS: 0.62 Total: -18.83 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.66 Total: -22.04 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.07 Total: -4.62 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.69 -7.31 -37.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239575492.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.476 kcal (2) G-P(sol) polarization free energy of solvation -29.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds