Wall clock time and date at job start Tue Mar 31 2020 12:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34837 * 116.99916 * 2 1 4 4 O 1.21547 * 120.00152 * 0.02562 * 3 2 1 5 5 C 1.47118 * 119.99680 * 180.02562 * 3 2 1 6 6 C 1.39539 * 120.44807 * 355.99564 * 5 3 2 7 7 C 1.37792 * 120.19617 * 179.97438 * 6 5 3 8 8 C 1.39771 * 121.15445 * 0.02562 * 7 6 5 9 9 C 1.48217 * 119.54873 * 179.97438 * 8 7 6 10 10 C 1.39607 * 120.15192 * 244.71658 * 9 8 7 11 11 F 1.35097 * 120.07680 * 0.02562 * 10 9 8 12 12 C 1.38248 * 119.84095 * 179.78852 * 10 9 8 13 13 C 1.38304 * 120.15530 * 0.46700 * 12 10 9 14 14 C 1.38297 * 120.31185 * 359.78764 * 13 12 10 15 15 C 1.38251 * 120.15639 * 359.97438 * 14 13 12 16 16 F 1.35102 * 120.07888 * 179.97438 * 15 14 13 17 17 C 1.38776 * 120.90130 * 0.24736 * 8 7 6 18 18 C 1.40533 * 119.72842 * 359.50181 * 17 8 7 19 19 C 1.40922 * 120.54804 * 180.22603 * 18 17 8 20 20 H 1.07999 * 119.99874 * 213.24479 * 19 18 17 21 21 C 1.40276 * 119.99842 * 33.23732 * 19 18 17 22 22 N 1.30625 * 119.99898 * 9.36404 * 21 19 18 23 23 Si 1.86799 * 119.99952 * 189.35807 * 21 19 18 24 24 H 1.48495 * 109.46897 * 60.00359 * 23 21 19 25 25 H 1.48500 * 109.47304 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47238 * 300.00331 * 23 21 19 27 27 H 1.08996 * 109.47353 * 59.99565 * 1 2 3 28 28 H 1.09001 * 109.47263 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46640 * 299.99638 * 1 2 3 30 30 H 1.07997 * 119.90070 * 359.97438 * 6 5 3 31 31 H 1.07998 * 119.42314 * 179.97438 * 7 6 5 32 32 H 1.08002 * 119.92286 * 180.25884 * 12 10 9 33 33 H 1.08001 * 119.83961 * 179.76359 * 13 12 10 34 34 H 1.07999 * 119.92144 * 179.97438 * 14 13 12 35 35 H 1.07995 * 120.13767 * 179.72377 * 17 8 7 36 36 H 0.96997 * 119.99558 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2014 0.0000 4 8 1.4021 2.2208 0.0005 5 6 3.5333 1.2783 -0.0006 6 6 4.3022 0.1169 0.0829 7 6 5.6779 0.1950 0.0814 8 6 6.3322 1.4273 -0.0024 9 6 7.8138 1.4699 -0.0005 10 6 8.4964 2.0801 1.0534 11 9 7.8081 2.6335 2.0757 12 6 9.8785 2.1123 1.0507 13 6 10.5846 1.5504 0.0026 14 6 9.9147 0.9490 -1.0472 15 6 8.5329 0.9051 -1.0554 16 9 7.8801 0.3176 -2.0820 17 6 5.6135 2.6118 -0.0816 18 6 4.2087 2.5755 -0.0884 19 6 3.4618 3.7675 -0.1731 20 1 2.5089 3.8445 0.3294 21 6 3.9561 4.8540 -0.9099 22 7 5.0118 4.7052 -1.6646 23 14 3.1044 6.5137 -0.8120 24 1 3.1200 6.9959 0.5924 25 1 3.8165 7.4874 -1.6781 26 1 1.6993 6.3770 -1.2730 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 3.8177 -0.8460 0.1488 31 1 6.2609 -0.7118 0.1469 32 1 10.4081 2.5803 1.8674 33 1 11.6641 1.5818 0.0039 34 1 10.4723 0.5125 -1.8627 35 1 6.1317 3.5574 -0.1414 36 1 5.3533 5.4564 -2.1743 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239575492.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:36 Heat of formation + Delta-G solvation = -147.349777 kcal Electronic energy + Delta-G solvation = -25943.122025 eV Core-core repulsion = 21799.340373 eV Total energy + Delta-G solvation = -4143.781653 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.92514 -49.89766 -41.06017 -39.93003 -38.71120 -37.06020 -35.81438 -33.57368 -31.73651 -31.23353 -30.29057 -28.51050 -27.35897 -25.08453 -23.75371 -22.96591 -22.86200 -21.32784 -19.50731 -18.99741 -18.40389 -18.05814 -17.61263 -17.44174 -17.03832 -16.88350 -16.69325 -16.54637 -16.24123 -15.61493 -15.39411 -15.24208 -15.14588 -14.57361 -14.26265 -14.13641 -13.65658 -13.57366 -13.23670 -13.12002 -12.97826 -12.89964 -12.81724 -12.79874 -12.41218 -12.26720 -11.98614 -11.67533 -11.61001 -11.27461 -10.77839 -10.05186 -9.70854 -9.48540 -9.24676 -8.85570 -6.56960 -0.17243 0.04080 0.29323 0.92090 1.29799 1.42426 1.46147 1.91478 2.10280 2.12221 2.45071 2.60587 2.96520 3.42292 3.51090 3.58290 3.91489 4.01265 4.25440 4.27770 4.37261 4.38272 4.41712 4.57030 4.71708 4.87365 4.93681 4.95649 5.02227 5.07814 5.08994 5.13690 5.22545 5.39964 5.55261 5.66584 5.82233 5.87955 5.92314 6.11793 6.49303 6.63220 6.73711 7.21561 8.09650 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.011451 B = 0.005285 C = 0.004113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.633568 B = 5297.141613 C = 6805.578511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.504 3.496 4 O -0.548 6.548 5 C -0.286 4.286 6 C -0.024 4.024 7 C -0.232 4.232 8 C -0.024 4.024 9 C -0.129 4.129 10 C 0.108 3.892 11 F -0.144 7.144 12 C -0.155 4.155 13 C -0.050 4.050 14 C -0.154 4.154 15 C 0.113 3.887 16 F -0.142 7.142 17 C -0.146 4.146 18 C 0.121 3.879 19 C -0.443 4.443 20 H 0.095 0.905 21 C 0.031 3.969 22 N -0.802 5.802 23 Si 0.987 3.013 24 H -0.255 1.255 25 H -0.254 1.254 26 H -0.266 1.266 27 H 0.051 0.949 28 H 0.135 0.865 29 H 0.055 0.945 30 H 0.133 0.867 31 H 0.119 0.881 32 H 0.172 0.828 33 H 0.194 0.806 34 H 0.173 0.827 35 H 0.106 0.894 36 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.294 -5.245 1.813 11.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.290 6.290 3 C 0.356 3.644 4 O -0.442 6.442 5 C -0.289 4.289 6 C -0.043 4.043 7 C -0.251 4.251 8 C -0.025 4.025 9 C -0.131 4.131 10 C 0.089 3.911 11 F -0.123 7.123 12 C -0.173 4.173 13 C -0.067 4.067 14 C -0.172 4.172 15 C 0.094 3.906 16 F -0.120 7.120 17 C -0.166 4.166 18 C 0.118 3.882 19 C -0.470 4.470 20 H 0.113 0.887 21 C -0.187 4.187 22 N -0.426 5.426 23 Si 0.806 3.194 24 H -0.179 1.179 25 H -0.178 1.178 26 H -0.191 1.191 27 H 0.070 0.930 28 H 0.153 0.847 29 H 0.074 0.926 30 H 0.151 0.849 31 H 0.137 0.863 32 H 0.189 0.811 33 H 0.211 0.789 34 H 0.191 0.809 35 H 0.124 0.876 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.171 -4.856 1.635 11.389 hybrid contribution -1.418 0.765 -0.154 1.618 sum 8.753 -4.091 1.481 9.775 Atomic orbital electron populations 1.23405 0.75687 1.05179 1.01801 1.86541 1.24310 1.32729 1.85458 1.21179 0.89374 0.80837 0.72968 1.90674 1.67491 1.36406 1.49657 1.20075 0.88087 0.94566 1.26134 1.20978 0.93396 0.96524 0.93360 1.20454 0.93869 0.95777 1.15006 1.18574 0.90538 0.94089 0.99291 1.19194 0.93622 1.03851 0.96392 1.17893 0.90952 0.97102 0.85157 1.91488 1.80668 1.83043 1.57080 1.21533 0.89774 1.03257 1.02757 1.21394 1.02416 0.92884 0.89999 1.21539 0.90039 1.03064 1.02590 1.17824 0.91230 0.96907 0.84678 1.91488 1.82362 1.81503 1.56674 1.21161 0.93102 0.96101 1.06188 1.18729 0.91944 0.91105 0.86456 1.20387 1.05383 0.96174 1.25080 0.88726 1.27034 0.94831 1.04385 0.92487 1.69733 1.19739 1.34902 1.18248 0.85182 0.78934 0.75146 0.80130 1.17851 1.17772 1.19086 0.92970 0.84678 0.92616 0.84892 0.86303 0.81097 0.78923 0.80930 0.87639 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.00 10.57 113.37 1.20 2.20 16 2 O -0.37 -15.44 9.84 -57.49 -0.57 -16.01 16 3 C 0.50 25.55 7.87 70.15 0.55 26.11 16 4 O -0.55 -30.15 13.47 19.68 0.27 -29.88 16 5 C -0.29 -15.15 6.07 -18.48 -0.11 -15.27 16 6 C -0.02 -1.13 9.60 22.48 0.22 -0.92 16 7 C -0.23 -10.48 9.45 22.53 0.21 -10.26 16 8 C -0.02 -1.15 4.72 -20.13 -0.09 -1.25 16 9 C -0.13 -5.06 5.28 -19.96 -0.11 -5.16 16 10 C 0.11 3.72 7.23 22.60 0.16 3.88 16 11 F -0.14 -5.66 16.63 44.97 0.75 -4.92 16 12 C -0.15 -3.51 10.01 22.29 0.22 -3.28 16 13 C -0.05 -0.85 10.03 22.30 0.22 -0.62 16 14 C -0.15 -3.41 10.01 22.29 0.22 -3.19 16 15 C 0.11 3.80 7.23 22.60 0.16 3.96 16 16 F -0.14 -5.36 16.66 44.97 0.75 -4.61 16 17 C -0.15 -7.91 8.06 22.96 0.19 -7.72 16 18 C 0.12 6.94 5.66 -19.91 -0.11 6.82 16 19 C -0.44 -25.47 7.96 23.42 0.19 -25.29 16 20 H 0.09 5.63 5.76 -2.91 -0.02 5.61 16 21 C 0.03 1.60 5.26 85.37 0.45 2.05 16 22 N -0.80 -42.20 11.10 21.88 0.24 -41.96 16 23 Si 0.99 40.18 29.57 68.60 2.03 42.21 16 24 H -0.25 -10.04 7.11 99.48 0.71 -9.34 16 25 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.14 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.13 5.32 7.62 -2.91 -0.02 5.30 16 31 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 32 H 0.17 2.73 8.06 -2.91 -0.02 2.70 16 33 H 0.19 1.32 8.06 -2.91 -0.02 1.29 16 34 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 35 H 0.11 5.93 6.55 -2.91 -0.02 5.91 16 36 H 0.30 13.94 8.29 -92.71 -0.77 13.17 16 Total: -1.00 -72.17 328.45 8.18 -63.99 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 1.14 Total: 19.11 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 3.57 Total: -27.94 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.24 Total: -41.96 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -0.30 Total: -45.89 kcal Atomic # 9 Polarization: -11.02 SS G_CDS: 1.50 Total: -9.52 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -72.17 8.18 -63.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239575492.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.361 kcal (2) G-P(sol) polarization free energy of solvation -72.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds