Wall clock time and date at job start Tue Mar 31 2020 12:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34834 * 117.00143 * 2 1 4 4 O 1.21549 * 119.99933 * 359.97438 * 3 2 1 5 5 C 1.47140 * 119.99690 * 179.97438 * 3 2 1 6 6 C 1.39522 * 120.45053 * 354.31938 * 5 3 2 7 7 C 1.37804 * 120.19364 * 180.02562 * 6 5 3 8 8 C 1.39746 * 121.15808 * 0.02562 * 7 6 5 9 9 C 1.48282 * 119.54850 * 179.97438 * 8 7 6 10 10 C 1.39416 * 120.08743 * 359.97438 * 9 8 7 11 11 C 1.37959 * 119.94224 * 180.02562 * 10 9 8 12 12 C 1.38525 * 120.12774 * 359.97438 * 11 10 9 13 13 F 1.35102 * 119.91168 * 180.02562 * 12 11 10 14 14 C 1.38761 * 120.18336 * 0.02562 * 12 11 10 15 15 F 1.35097 * 119.97733 * 180.02562 * 14 12 11 16 16 C 1.38170 * 120.05163 * 359.76600 * 14 12 11 17 17 C 1.38744 * 120.90520 * 359.69463 * 8 7 6 18 18 C 1.40553 * 119.72930 * 0.56462 * 17 8 7 19 19 C 1.40909 * 120.54725 * 179.74696 * 18 17 8 20 20 H 1.08003 * 120.00143 * 147.07821 * 19 18 17 21 21 C 1.40282 * 120.00288 * 327.35182 * 19 18 17 22 22 N 1.30626 * 119.99643 * 350.53410 * 21 19 18 23 23 Si 1.86791 * 120.00330 * 170.52738 * 21 19 18 24 24 H 1.48500 * 109.47092 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46993 * 120.00222 * 23 21 19 26 26 H 1.48498 * 109.47518 * 240.00416 * 23 21 19 27 27 H 1.09002 * 109.47081 * 300.00650 * 1 2 3 28 28 H 1.09000 * 109.46690 * 60.00003 * 1 2 3 29 29 H 1.08994 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.90424 * 0.04017 * 6 5 3 31 31 H 1.08001 * 119.42197 * 179.97438 * 7 6 5 32 32 H 1.07997 * 120.02889 * 359.97438 * 10 9 8 33 33 H 1.08006 * 119.93984 * 180.02562 * 11 10 9 34 34 H 1.08002 * 120.06516 * 180.27474 * 16 14 12 35 35 H 1.08000 * 120.14042 * 180.30824 * 17 8 7 36 36 H 0.97001 * 120.00055 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4022 2.2208 -0.0005 5 6 3.5336 1.2783 0.0006 6 6 4.3022 0.1200 0.1202 7 6 5.6780 0.1982 0.1206 8 6 6.3324 1.4274 0.0030 9 6 7.8146 1.4702 0.0082 10 6 8.5474 0.2904 0.1302 11 6 9.9263 0.3338 0.1352 12 6 10.5843 1.5472 0.0187 13 9 11.9348 1.5846 0.0235 14 6 9.8601 2.7246 -0.1031 15 9 10.5060 3.9057 -0.2170 16 6 8.4789 2.6895 -0.1133 17 6 5.6143 2.6077 -0.1243 18 6 4.2092 2.5722 -0.1236 19 6 3.4628 3.7610 -0.2465 20 1 2.5118 3.7511 -0.7585 21 6 3.9574 4.9586 0.2911 22 7 5.0120 4.9421 1.0617 23 14 3.1082 6.5769 -0.0952 24 1 1.9452 6.3258 -0.9838 25 1 2.6399 7.2037 1.1670 26 1 4.0638 7.4875 -0.7753 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.8175 -0.8407 0.2124 31 1 6.2608 -0.7062 0.2143 32 1 8.0361 -0.6564 0.2216 33 1 10.4941 -0.5802 0.2293 34 1 7.9150 3.6053 -0.2125 35 1 6.1328 3.5503 -0.2194 36 1 5.3543 5.7702 1.4332 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239585932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:40 Heat of formation + Delta-G solvation = -134.630632 kcal Electronic energy + Delta-G solvation = -25307.920694 eV Core-core repulsion = 21164.690585 eV Total energy + Delta-G solvation = -4143.230109 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.24988 -48.32567 -39.40455 -38.93709 -36.97455 -35.31408 -34.05288 -31.89311 -30.79706 -29.82128 -28.52442 -27.03711 -25.71100 -23.67076 -22.94742 -21.42331 -20.89356 -19.64205 -18.05658 -17.51409 -17.01168 -16.49594 -16.44768 -16.08246 -15.87403 -15.46025 -15.28018 -14.79560 -14.75735 -14.34251 -13.90191 -13.67889 -13.43378 -13.13443 -12.72548 -12.66293 -12.54879 -12.30933 -11.94133 -11.76976 -11.60906 -11.40585 -11.18629 -11.08557 -10.87227 -10.68119 -10.37957 -10.02762 -9.81828 -9.58327 -9.04671 -8.96659 -8.70885 -7.69419 -7.34759 -7.09376 -4.69854 0.85695 1.23426 2.10868 2.62332 2.95883 3.03595 3.04466 3.47853 3.66737 3.75418 3.98848 3.99924 4.42832 4.52717 4.76414 4.99349 5.20299 5.31827 5.39657 5.54173 5.61800 5.77435 5.87435 5.92320 6.02000 6.07402 6.13247 6.26363 6.37472 6.44181 6.71212 6.83492 6.88776 6.98206 7.14072 7.29392 7.41246 7.65811 7.67316 7.86002 8.32380 8.44680 8.53953 8.98417 9.80073 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012554 B = 0.004336 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.787377 B = 6455.784212 C = 8595.337968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.374 6.374 3 C 0.503 3.497 4 O -0.519 6.519 5 C -0.257 4.257 6 C -0.025 4.025 7 C -0.241 4.241 8 C -0.032 4.032 9 C 0.006 3.994 10 C -0.102 4.102 11 C -0.125 4.125 12 C 0.042 3.958 13 F -0.138 7.138 14 C 0.070 3.930 15 F -0.134 7.134 16 C -0.123 4.123 17 C -0.126 4.126 18 C 0.144 3.856 19 C -0.397 4.397 20 H 0.109 0.891 21 C 0.067 3.933 22 N -0.775 5.775 23 Si 0.921 3.079 24 H -0.254 1.254 25 H -0.270 1.270 26 H -0.269 1.269 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.153 0.847 35 H 0.129 0.871 36 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.698 -5.882 -1.288 7.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.292 6.292 3 C 0.354 3.646 4 O -0.410 6.410 5 C -0.260 4.260 6 C -0.044 4.044 7 C -0.260 4.260 8 C -0.033 4.033 9 C 0.006 3.994 10 C -0.120 4.120 11 C -0.144 4.144 12 C 0.022 3.978 13 F -0.117 7.117 14 C 0.050 3.950 15 F -0.112 7.112 16 C -0.141 4.141 17 C -0.145 4.145 18 C 0.140 3.860 19 C -0.424 4.424 20 H 0.127 0.873 21 C -0.154 4.154 22 N -0.398 5.398 23 Si 0.744 3.256 24 H -0.178 1.178 25 H -0.195 1.195 26 H -0.194 1.194 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.171 0.829 35 H 0.147 0.853 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.697 -5.371 -1.146 6.620 hybrid contribution -0.093 0.984 0.070 0.991 sum 3.604 -4.387 -1.076 5.778 Atomic orbital electron populations 1.22978 0.78556 1.02080 1.01768 1.86588 1.21556 1.34990 1.86113 1.21273 0.89529 0.80257 0.73542 1.90735 1.66906 1.35304 1.48042 1.19761 0.86869 0.94930 1.24411 1.20725 0.93264 0.96254 0.94127 1.20173 0.93737 0.95398 1.16731 1.18413 0.88801 0.94594 1.01446 1.19025 0.94080 0.91449 0.94838 1.21250 0.92230 0.99092 0.99437 1.20926 0.95126 0.95931 1.02403 1.17686 0.77013 0.93812 1.09243 1.91477 1.28481 1.97262 1.94436 1.17591 0.90784 0.80111 1.06551 1.91499 1.81591 1.44454 1.93691 1.21372 0.90942 1.00630 1.01204 1.21501 0.93587 0.96124 1.03291 1.18354 0.91049 0.90366 0.86257 1.20342 1.05236 0.90752 1.26035 0.87312 1.26245 0.94239 1.01967 0.92962 1.69679 1.18786 1.30772 1.20611 0.86011 0.80391 0.79424 0.79732 1.17758 1.19488 1.19412 0.92770 0.92778 0.89391 0.87473 0.88129 0.83936 0.84125 0.82932 0.85343 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.57 101.05 1.07 1.67 16 2 O -0.37 -7.24 9.84 -40.86 -0.40 -7.64 16 3 C 0.50 11.53 7.86 34.34 0.27 11.80 16 4 O -0.52 -12.96 13.55 -19.30 -0.26 -13.22 16 5 C -0.26 -5.99 6.07 -102.48 -0.62 -6.62 16 6 C -0.03 -0.52 9.60 -39.26 -0.38 -0.89 16 7 C -0.24 -4.61 9.37 -39.18 -0.37 -4.98 16 8 C -0.03 -0.64 5.86 -105.02 -0.62 -1.26 16 9 C 0.01 0.11 5.88 -104.90 -0.62 -0.50 16 10 C -0.10 -1.45 9.41 -39.25 -0.37 -1.82 16 11 C -0.13 -1.64 10.01 -39.58 -0.40 -2.03 16 12 C 0.04 0.64 7.31 -39.28 -0.29 0.35 16 13 F -0.14 -2.09 17.18 2.25 0.04 -2.05 16 14 C 0.07 1.14 7.30 -39.41 -0.29 0.86 16 15 F -0.13 -2.26 17.18 2.25 0.04 -2.22 16 16 C -0.12 -2.11 9.39 -39.18 -0.37 -2.48 16 17 C -0.13 -2.87 8.00 -38.52 -0.31 -3.18 16 18 C 0.14 3.55 5.66 -104.69 -0.59 2.96 16 19 C -0.40 -9.99 7.84 -37.80 -0.30 -10.29 16 20 H 0.11 2.84 5.97 -52.48 -0.31 2.53 16 21 C 0.07 1.56 5.26 -17.30 -0.09 1.47 16 22 N -0.77 -18.08 11.06 55.56 0.61 -17.47 16 23 Si 0.92 17.95 29.57 -169.99 -5.03 12.93 16 24 H -0.25 -5.06 7.11 56.52 0.40 -4.66 16 25 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 26 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.11 1.94 7.63 -52.49 -0.40 1.54 16 31 H 0.10 1.60 6.09 -52.49 -0.32 1.28 16 32 H 0.14 1.75 6.13 -52.49 -0.32 1.42 16 33 H 0.14 1.41 8.06 -52.48 -0.42 0.98 16 34 H 0.15 2.71 6.15 -52.49 -0.32 2.39 16 35 H 0.13 2.92 4.58 -52.49 -0.24 2.68 16 36 H 0.29 6.10 8.29 -40.82 -0.34 5.76 16 LS Contribution 322.38 15.07 4.86 4.86 Total: -1.00 -26.86 322.38 -7.14 -34.00 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -2.74 Total: 5.76 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -4.26 Total: -14.95 kcal Atomic # 7 Polarization: -18.08 SS G_CDS: 0.61 Total: -17.47 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.66 Total: -20.86 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.08 Total: -4.27 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.86 -7.14 -34.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239585932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.631 kcal (2) G-P(sol) polarization free energy of solvation -26.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds