Wall clock time and date at job start Tue Mar 31 2020 12:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34834 * 117.00143 * 2 1 4 4 O 1.21549 * 119.99933 * 359.97438 * 3 2 1 5 5 C 1.47140 * 119.99690 * 179.97438 * 3 2 1 6 6 C 1.39522 * 120.45053 * 354.31938 * 5 3 2 7 7 C 1.37804 * 120.19364 * 180.02562 * 6 5 3 8 8 C 1.39746 * 121.15808 * 0.02562 * 7 6 5 9 9 C 1.48282 * 119.54850 * 179.97438 * 8 7 6 10 10 C 1.39416 * 120.08743 * 359.97438 * 9 8 7 11 11 C 1.37959 * 119.94224 * 180.02562 * 10 9 8 12 12 C 1.38525 * 120.12774 * 359.97438 * 11 10 9 13 13 F 1.35102 * 119.91168 * 180.02562 * 12 11 10 14 14 C 1.38761 * 120.18336 * 0.02562 * 12 11 10 15 15 F 1.35097 * 119.97733 * 180.02562 * 14 12 11 16 16 C 1.38170 * 120.05163 * 359.76600 * 14 12 11 17 17 C 1.38744 * 120.90520 * 359.69463 * 8 7 6 18 18 C 1.40553 * 119.72930 * 0.56462 * 17 8 7 19 19 C 1.40909 * 120.54725 * 179.74696 * 18 17 8 20 20 H 1.08003 * 120.00143 * 147.07821 * 19 18 17 21 21 C 1.40282 * 120.00288 * 327.35182 * 19 18 17 22 22 N 1.30626 * 119.99643 * 350.53410 * 21 19 18 23 23 Si 1.86791 * 120.00330 * 170.52738 * 21 19 18 24 24 H 1.48500 * 109.47092 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46993 * 120.00222 * 23 21 19 26 26 H 1.48498 * 109.47518 * 240.00416 * 23 21 19 27 27 H 1.09002 * 109.47081 * 300.00650 * 1 2 3 28 28 H 1.09000 * 109.46690 * 60.00003 * 1 2 3 29 29 H 1.08994 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.90424 * 0.04017 * 6 5 3 31 31 H 1.08001 * 119.42197 * 179.97438 * 7 6 5 32 32 H 1.07997 * 120.02889 * 359.97438 * 10 9 8 33 33 H 1.08006 * 119.93984 * 180.02562 * 11 10 9 34 34 H 1.08002 * 120.06516 * 180.27474 * 16 14 12 35 35 H 1.08000 * 120.14042 * 180.30824 * 17 8 7 36 36 H 0.97001 * 120.00055 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4022 2.2208 -0.0005 5 6 3.5336 1.2783 0.0006 6 6 4.3022 0.1200 0.1202 7 6 5.6780 0.1982 0.1206 8 6 6.3324 1.4274 0.0030 9 6 7.8146 1.4702 0.0082 10 6 8.5474 0.2904 0.1302 11 6 9.9263 0.3338 0.1352 12 6 10.5843 1.5472 0.0187 13 9 11.9348 1.5846 0.0235 14 6 9.8601 2.7246 -0.1031 15 9 10.5060 3.9057 -0.2170 16 6 8.4789 2.6895 -0.1133 17 6 5.6143 2.6077 -0.1243 18 6 4.2092 2.5722 -0.1236 19 6 3.4628 3.7610 -0.2465 20 1 2.5118 3.7511 -0.7585 21 6 3.9574 4.9586 0.2911 22 7 5.0120 4.9421 1.0617 23 14 3.1082 6.5769 -0.0952 24 1 1.9452 6.3258 -0.9838 25 1 2.6399 7.2037 1.1670 26 1 4.0638 7.4875 -0.7753 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.8175 -0.8407 0.2124 31 1 6.2608 -0.7062 0.2143 32 1 8.0361 -0.6564 0.2216 33 1 10.4941 -0.5802 0.2293 34 1 7.9150 3.6053 -0.2125 35 1 6.1328 3.5503 -0.2194 36 1 5.3543 5.7702 1.4332 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239585932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:39 Heat of formation + Delta-G solvation = -146.263832 kcal Electronic energy + Delta-G solvation = -25308.425147 eV Core-core repulsion = 21164.690585 eV Total energy + Delta-G solvation = -4143.734562 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.50284 -49.58090 -41.03924 -40.31584 -38.50595 -36.99060 -35.73944 -33.35249 -32.15953 -31.39056 -29.95224 -28.43209 -27.33440 -25.09985 -24.28701 -22.88540 -22.47274 -21.23822 -19.55901 -18.90023 -18.50129 -17.95520 -17.84383 -17.47131 -17.33284 -17.02205 -16.84851 -16.19488 -16.01480 -15.69228 -15.20319 -15.16647 -14.90518 -14.62845 -14.26089 -14.15554 -13.88564 -13.72240 -13.42447 -13.21764 -13.00098 -12.93743 -12.77175 -12.59176 -12.42401 -12.11711 -11.99543 -11.56067 -11.41792 -11.25659 -10.76173 -10.34635 -9.98787 -9.38620 -8.93094 -8.73605 -6.49961 -0.51577 0.02648 0.55064 0.98570 1.32944 1.46406 1.47660 1.94638 2.14376 2.15139 2.48942 2.75975 2.77450 3.29492 3.55882 3.60977 3.70202 4.05782 4.14642 4.35061 4.40311 4.43669 4.47133 4.58870 4.73402 4.78307 4.84140 4.89410 5.01029 5.08070 5.11356 5.17957 5.32947 5.51056 5.61678 5.76360 5.81014 5.94224 6.03877 6.22219 6.55306 6.69168 6.80352 7.27092 8.12624 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012554 B = 0.004336 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.787377 B = 6455.784212 C = 8595.337968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.371 6.371 3 C 0.501 3.499 4 O -0.551 6.551 5 C -0.284 4.284 6 C -0.027 4.027 7 C -0.227 4.227 8 C -0.022 4.022 9 C -0.018 4.018 10 C -0.083 4.083 11 C -0.105 4.105 12 C 0.049 3.951 13 F -0.136 7.136 14 C 0.052 3.948 15 F -0.142 7.142 16 C -0.130 4.130 17 C -0.159 4.159 18 C 0.120 3.880 19 C -0.440 4.440 20 H 0.085 0.915 21 C 0.035 3.965 22 N -0.802 5.802 23 Si 0.979 3.021 24 H -0.266 1.266 25 H -0.264 1.264 26 H -0.254 1.254 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.135 0.865 30 H 0.135 0.865 31 H 0.147 0.853 32 H 0.175 0.825 33 H 0.186 0.814 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.243 -9.068 -1.007 10.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.289 6.289 3 C 0.353 3.647 4 O -0.445 6.445 5 C -0.287 4.287 6 C -0.045 4.045 7 C -0.245 4.245 8 C -0.023 4.023 9 C -0.018 4.018 10 C -0.100 4.100 11 C -0.124 4.124 12 C 0.029 3.971 13 F -0.115 7.115 14 C 0.032 3.968 15 F -0.121 7.121 16 C -0.149 4.149 17 C -0.177 4.177 18 C 0.116 3.884 19 C -0.467 4.467 20 H 0.103 0.897 21 C -0.183 4.183 22 N -0.426 5.426 23 Si 0.800 3.200 24 H -0.190 1.190 25 H -0.189 1.189 26 H -0.178 1.178 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.165 0.835 32 H 0.192 0.808 33 H 0.203 0.797 34 H 0.150 0.850 35 H 0.134 0.866 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.253 -8.586 -0.864 10.102 hybrid contribution -0.464 1.708 -0.016 1.770 sum 4.789 -6.878 -0.881 8.427 Atomic orbital electron populations 1.23383 0.75906 1.05120 1.01658 1.86541 1.24090 1.32807 1.85432 1.21367 0.89714 0.80770 0.72874 1.90714 1.67613 1.36631 1.49495 1.20134 0.87762 0.95698 1.25084 1.21060 0.93894 0.96292 0.93252 1.20696 0.93614 0.96490 1.13741 1.18736 0.90588 0.94120 0.98868 1.18966 0.92650 0.92778 0.97443 1.21550 0.92656 0.98783 0.97024 1.21337 0.94719 0.96501 0.99800 1.17902 0.77060 0.93970 1.08187 1.91490 1.28410 1.97270 1.94303 1.17705 0.90609 0.80599 1.07848 1.91472 1.81597 1.45147 1.93898 1.21241 0.91399 1.00361 1.01898 1.21432 0.93097 0.97077 1.06135 1.18717 0.92180 0.91020 0.86443 1.20260 1.05149 0.92499 1.28828 0.89666 1.26838 0.94836 1.04105 0.92490 1.69699 1.19810 1.31646 1.21466 0.85181 0.79199 0.76217 0.79415 1.19028 1.18894 1.17778 0.93020 0.92905 0.84683 0.84699 0.83504 0.80765 0.79704 0.84953 0.86589 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 10.57 113.37 1.20 2.13 16 2 O -0.37 -14.05 9.84 -57.46 -0.57 -14.62 16 3 C 0.50 23.53 7.86 70.16 0.55 24.08 16 4 O -0.55 -28.91 13.55 19.67 0.27 -28.64 16 5 C -0.28 -13.53 6.07 -18.48 -0.11 -13.64 16 6 C -0.03 -1.05 9.60 22.48 0.22 -0.83 16 7 C -0.23 -7.98 9.37 22.53 0.21 -7.77 16 8 C -0.02 -0.89 5.86 -20.12 -0.12 -1.00 16 9 C -0.02 -0.59 5.88 -20.05 -0.12 -0.71 16 10 C -0.08 -1.95 9.41 22.49 0.21 -1.74 16 11 C -0.11 -2.20 10.01 22.27 0.22 -1.98 16 12 C 0.05 1.32 7.31 22.46 0.16 1.48 16 13 F -0.14 -3.70 17.18 44.97 0.77 -2.92 16 14 C 0.05 1.68 7.30 22.38 0.16 1.84 16 15 F -0.14 -4.83 17.18 44.97 0.77 -4.06 16 16 C -0.13 -4.50 9.39 22.53 0.21 -4.29 16 17 C -0.16 -7.52 8.00 22.96 0.18 -7.34 16 18 C 0.12 6.24 5.66 -19.91 -0.11 6.13 16 19 C -0.44 -23.79 7.84 23.42 0.18 -23.61 16 20 H 0.09 4.86 5.97 -2.91 -0.02 4.84 16 21 C 0.04 1.74 5.26 85.37 0.45 2.19 16 22 N -0.80 -39.65 11.06 21.88 0.24 -39.40 16 23 Si 0.98 38.88 29.57 68.60 2.03 40.91 16 24 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 25 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 26 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.14 4.44 7.63 -2.91 -0.02 4.42 16 31 H 0.15 3.77 6.09 -2.91 -0.02 3.75 16 32 H 0.18 3.03 6.13 -2.91 -0.02 3.01 16 33 H 0.19 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.13 5.06 6.15 -2.91 -0.02 5.04 16 35 H 0.12 5.68 4.58 -2.91 -0.01 5.67 16 36 H 0.30 13.14 8.29 -92.71 -0.77 12.37 16 Total: -1.00 -63.31 322.38 8.19 -55.12 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 1.16 Total: 18.68 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: 3.51 Total: -25.06 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.24 Total: -39.40 kcal Atomic # 8 Polarization: -42.96 SS G_CDS: -0.30 Total: -43.26 kcal Atomic # 9 Polarization: -8.53 SS G_CDS: 1.54 Total: -6.98 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -63.31 8.19 -55.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239585932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.141 kcal (2) G-P(sol) polarization free energy of solvation -63.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds