Wall clock time and date at job start Tue Mar 31 2020 12:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34819 * 117.00652 * 2 1 4 4 O 1.21556 * 119.99597 * 0.02562 * 3 2 1 5 5 C 1.47161 * 120.00545 * 179.97438 * 3 2 1 6 6 C 1.39512 * 120.44569 * 354.35816 * 5 3 2 7 7 C 1.37821 * 120.19087 * 180.02562 * 6 5 3 8 8 C 1.39728 * 121.15736 * 0.02562 * 7 6 5 9 9 C 1.48319 * 119.54632 * 179.97438 * 8 7 6 10 10 C 1.39361 * 120.10084 * 185.08900 * 9 8 7 11 11 C 1.38244 * 119.89462 * 179.72073 * 10 9 8 12 12 F 1.35099 * 119.95066 * 180.29785 * 11 10 9 13 13 C 1.38513 * 120.10529 * 0.54773 * 11 10 9 14 14 C 1.38511 * 120.19897 * 359.72684 * 13 11 10 15 15 F 1.35103 * 119.95154 * 179.97438 * 14 13 11 16 16 C 1.38251 * 120.10219 * 359.97438 * 14 13 11 17 17 C 1.38717 * 120.91115 * 359.73554 * 8 7 6 18 18 C 1.40566 * 119.72743 * 0.51999 * 17 8 7 19 19 C 1.40918 * 120.54775 * 179.76347 * 18 17 8 20 20 H 1.07998 * 119.99833 * 146.34725 * 19 18 17 21 21 C 1.40281 * 119.99889 * 326.62887 * 19 18 17 22 22 N 1.30622 * 120.00127 * 167.26062 * 21 19 18 23 23 Si 1.86801 * 120.00093 * 347.25571 * 21 19 18 24 24 H 1.48500 * 109.47030 * 92.63168 * 23 21 19 25 25 H 1.48500 * 109.47367 * 212.63168 * 23 21 19 26 26 H 1.48503 * 109.47107 * 332.63352 * 23 21 19 27 27 H 1.09010 * 109.46806 * 59.99638 * 1 2 3 28 28 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47115 * 300.00023 * 1 2 3 30 30 H 1.08006 * 119.90398 * 0.04570 * 6 5 3 31 31 H 1.08001 * 119.41844 * 179.97438 * 7 6 5 32 32 H 1.07997 * 120.05282 * 359.97438 * 10 9 8 33 33 H 1.07993 * 119.89994 * 179.74406 * 13 11 10 34 34 H 1.08003 * 120.04999 * 179.97438 * 16 14 13 35 35 H 1.07999 * 120.14040 * 180.28324 * 17 8 7 36 36 H 0.96996 * 119.99887 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2012 0.0000 4 8 1.4022 2.2207 0.0005 5 6 3.5337 1.2782 0.0006 6 6 4.3023 0.1199 0.1194 7 6 5.6783 0.1981 0.1198 8 6 6.3325 1.4273 0.0030 9 6 7.8151 1.4701 0.0082 10 6 8.4790 2.6953 -0.0007 11 6 9.8609 2.7303 0.0100 12 9 10.5056 3.9176 0.0075 13 6 10.5857 1.5500 0.0180 14 6 9.9302 0.3298 0.0211 15 9 10.6421 -0.8184 0.0285 16 6 8.5484 0.2851 0.0167 17 6 5.6146 2.6075 -0.1226 18 6 4.2094 2.5721 -0.1220 19 6 3.4629 3.7612 -0.2435 20 1 2.5177 3.7542 -0.7658 21 6 3.9505 4.9550 0.3087 22 7 3.3981 6.0951 -0.0092 23 14 5.3898 4.9142 1.4987 24 1 6.6579 5.0996 0.7484 25 1 5.2399 6.0055 2.4946 26 1 5.4160 3.6050 2.1992 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.8175 -0.8409 0.2109 31 1 6.2610 -0.7064 0.2129 32 1 7.9147 3.6161 -0.0118 33 1 11.6652 1.5812 0.0222 34 1 8.0381 -0.6668 0.0187 35 1 6.1332 3.5502 -0.2166 36 1 3.7350 6.9205 0.3729 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239656423.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:43 Heat of formation + Delta-G solvation = -130.910464 kcal Electronic energy + Delta-G solvation = -25462.874506 eV Core-core repulsion = 21319.805715 eV Total energy + Delta-G solvation = -4143.068791 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.00483 -48.95943 -39.53754 -39.05132 -37.17006 -35.39302 -34.02251 -32.23895 -31.07831 -30.11259 -29.01167 -27.16771 -25.64409 -23.95390 -22.92771 -21.54562 -21.18352 -19.70929 -18.18258 -17.42224 -17.27319 -16.86412 -16.32941 -15.96305 -15.93923 -15.51332 -15.49394 -15.31354 -15.28791 -14.43510 -14.25314 -13.86929 -13.80034 -13.18846 -12.84989 -12.78002 -12.53018 -12.37309 -12.28778 -11.81278 -11.69464 -11.50253 -11.40267 -11.11722 -11.03701 -10.72209 -10.43199 -10.07678 -9.96707 -9.53954 -9.25846 -9.08680 -8.73474 -7.95746 -7.59540 -7.25470 -4.79789 0.67041 1.02811 1.93017 2.42087 2.85222 2.98932 3.07809 3.30237 3.58418 3.69564 3.82587 3.83911 4.32107 4.41175 4.60292 4.84610 4.97426 5.10679 5.18764 5.52134 5.60381 5.67615 5.69300 5.73560 5.80906 5.89098 6.02707 6.04712 6.15336 6.19966 6.31230 6.53952 6.79902 6.84871 6.88438 7.15745 7.18833 7.40956 7.45703 7.70785 8.09723 8.28739 8.48542 8.90574 9.70458 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.004798 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.492781 B = 5833.886121 C = 7797.123140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.374 6.374 3 C 0.501 3.499 4 O -0.508 6.508 5 C -0.242 4.242 6 C -0.010 4.010 7 C -0.248 4.248 8 C -0.002 4.002 9 C 0.034 3.966 10 C -0.167 4.167 11 C 0.132 3.868 12 F -0.134 7.134 13 C -0.206 4.206 14 C 0.129 3.871 15 F -0.135 7.135 16 C -0.158 4.158 17 C -0.205 4.205 18 C 0.114 3.886 19 C -0.377 4.377 20 H 0.122 0.878 21 C 0.077 3.923 22 N -0.770 5.770 23 Si 0.902 3.098 24 H -0.262 1.262 25 H -0.281 1.281 26 H -0.236 1.236 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.113 0.887 36 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.458 -7.730 1.103 10.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.292 6.292 3 C 0.350 3.650 4 O -0.398 6.398 5 C -0.245 4.245 6 C -0.028 4.028 7 C -0.267 4.267 8 C -0.003 4.003 9 C 0.034 3.966 10 C -0.186 4.186 11 C 0.112 3.888 12 F -0.112 7.112 13 C -0.225 4.225 14 C 0.109 3.891 15 F -0.113 7.113 16 C -0.177 4.177 17 C -0.224 4.224 18 C 0.110 3.890 19 C -0.402 4.402 20 H 0.139 0.861 21 C -0.147 4.147 22 N -0.391 5.391 23 Si 0.727 3.273 24 H -0.188 1.188 25 H -0.208 1.208 26 H -0.159 1.159 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.131 0.869 31 H 0.124 0.876 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.130 0.870 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.188 -7.114 1.093 10.172 hybrid contribution 0.642 0.305 0.452 0.842 sum 7.830 -6.809 1.546 10.491 Atomic orbital electron populations 1.23003 0.78272 1.02175 1.01930 1.86565 1.21779 1.34802 1.86091 1.21193 0.89427 0.80457 0.73882 1.90804 1.66760 1.35160 1.47103 1.19660 0.87149 0.94434 1.23274 1.20848 0.93200 0.96479 0.92279 1.20193 0.93863 0.95361 1.17265 1.18280 0.88495 0.94469 0.99018 1.18726 0.93767 0.90885 0.93209 1.21544 0.92335 1.00227 1.04471 1.17144 0.89949 0.80461 1.01217 1.91517 1.81750 1.44204 1.93747 1.20912 1.01400 0.90411 1.09798 1.17141 0.89244 0.81147 1.01524 1.91510 1.78411 1.47595 1.93829 1.21341 0.91421 1.00298 1.04616 1.21168 0.93782 0.96159 1.11248 1.18334 0.90426 0.91541 0.88722 1.20187 1.06492 0.89240 1.24261 0.86073 1.26468 0.97284 0.94464 0.96485 1.69542 1.36483 0.99473 1.33641 0.86482 0.79902 0.80465 0.80408 1.18812 1.20794 1.15859 0.92653 0.89287 0.92660 0.86861 0.87611 0.83620 0.83818 0.83404 0.86956 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 10.57 101.05 1.07 1.67 16 2 O -0.37 -7.08 9.84 -40.82 -0.40 -7.48 16 3 C 0.50 11.30 7.86 34.35 0.27 11.57 16 4 O -0.51 -12.85 13.56 -19.31 -0.26 -13.11 16 5 C -0.24 -5.48 6.07 -102.48 -0.62 -6.10 16 6 C -0.01 -0.19 9.60 -39.26 -0.38 -0.56 16 7 C -0.25 -4.52 9.36 -39.18 -0.37 -4.89 16 8 C 0.00 -0.04 5.86 -105.02 -0.62 -0.66 16 9 C 0.03 0.58 5.87 -104.92 -0.62 -0.04 16 10 C -0.17 -2.73 9.38 -39.16 -0.37 -3.10 16 11 C 0.13 1.93 7.29 -39.48 -0.29 1.64 16 12 F -0.13 -1.96 17.26 2.25 0.04 -1.92 16 13 C -0.21 -2.66 10.00 -39.38 -0.39 -3.06 16 14 C 0.13 1.73 7.29 -39.48 -0.29 1.44 16 15 F -0.13 -1.74 17.26 2.25 0.04 -1.71 16 16 C -0.16 -2.26 9.38 -39.16 -0.37 -2.63 16 17 C -0.21 -4.44 6.43 -38.53 -0.25 -4.69 16 18 C 0.11 2.74 5.23 -104.68 -0.55 2.19 16 19 C -0.38 -9.78 8.36 -37.80 -0.32 -10.10 16 20 H 0.12 3.48 6.20 -52.49 -0.33 3.15 16 21 C 0.08 1.89 5.46 -17.30 -0.09 1.79 16 22 N -0.77 -19.24 13.92 55.56 0.77 -18.46 16 23 Si 0.90 19.02 24.43 -169.99 -4.15 14.86 16 24 H -0.26 -5.10 5.71 56.52 0.32 -4.77 16 25 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.24 -5.10 6.78 56.52 0.38 -4.72 16 27 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 28 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.11 1.92 7.63 -52.48 -0.40 1.52 16 31 H 0.11 1.61 6.13 -52.49 -0.32 1.29 16 32 H 0.15 2.49 5.13 -52.49 -0.27 2.23 16 33 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.15 1.89 6.17 -52.48 -0.32 1.56 16 35 H 0.11 2.37 3.02 -52.49 -0.16 2.21 16 36 H 0.29 6.53 8.29 -40.82 -0.34 6.20 16 LS Contribution 314.92 15.07 4.75 4.75 Total: -1.00 -26.75 314.92 -6.11 -32.86 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -2.72 Total: 5.72 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -4.17 Total: -15.52 kcal Atomic # 7 Polarization: -19.24 SS G_CDS: 0.77 Total: -18.46 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.66 Total: -20.59 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.08 Total: -3.63 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -4.15 Total: 14.86 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.75 -6.11 -32.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239656423.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.049 kcal (2) G-P(sol) polarization free energy of solvation -26.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds