Wall clock time and date at job start Tue Mar 31 2020 12:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34819 * 117.00652 * 2 1 4 4 O 1.21556 * 119.99597 * 0.02562 * 3 2 1 5 5 C 1.47161 * 120.00545 * 179.97438 * 3 2 1 6 6 C 1.39512 * 120.44569 * 354.35816 * 5 3 2 7 7 C 1.37821 * 120.19087 * 180.02562 * 6 5 3 8 8 C 1.39728 * 121.15736 * 0.02562 * 7 6 5 9 9 C 1.48319 * 119.54632 * 179.97438 * 8 7 6 10 10 C 1.39361 * 120.10084 * 185.08900 * 9 8 7 11 11 C 1.38244 * 119.89462 * 179.72073 * 10 9 8 12 12 F 1.35099 * 119.95066 * 180.29785 * 11 10 9 13 13 C 1.38513 * 120.10529 * 0.54773 * 11 10 9 14 14 C 1.38511 * 120.19897 * 359.72684 * 13 11 10 15 15 F 1.35103 * 119.95154 * 179.97438 * 14 13 11 16 16 C 1.38251 * 120.10219 * 359.97438 * 14 13 11 17 17 C 1.38717 * 120.91115 * 359.73554 * 8 7 6 18 18 C 1.40566 * 119.72743 * 0.51999 * 17 8 7 19 19 C 1.40918 * 120.54775 * 179.76347 * 18 17 8 20 20 H 1.07998 * 119.99833 * 146.34725 * 19 18 17 21 21 C 1.40281 * 119.99889 * 326.62887 * 19 18 17 22 22 N 1.30622 * 120.00127 * 167.26062 * 21 19 18 23 23 Si 1.86801 * 120.00093 * 347.25571 * 21 19 18 24 24 H 1.48500 * 109.47030 * 92.63168 * 23 21 19 25 25 H 1.48500 * 109.47367 * 212.63168 * 23 21 19 26 26 H 1.48503 * 109.47107 * 332.63352 * 23 21 19 27 27 H 1.09010 * 109.46806 * 59.99638 * 1 2 3 28 28 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47115 * 300.00023 * 1 2 3 30 30 H 1.08006 * 119.90398 * 0.04570 * 6 5 3 31 31 H 1.08001 * 119.41844 * 179.97438 * 7 6 5 32 32 H 1.07997 * 120.05282 * 359.97438 * 10 9 8 33 33 H 1.07993 * 119.89994 * 179.74406 * 13 11 10 34 34 H 1.08003 * 120.04999 * 179.97438 * 16 14 13 35 35 H 1.07999 * 120.14040 * 180.28324 * 17 8 7 36 36 H 0.96996 * 119.99887 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2012 0.0000 4 8 1.4022 2.2207 0.0005 5 6 3.5337 1.2782 0.0006 6 6 4.3023 0.1199 0.1194 7 6 5.6783 0.1981 0.1198 8 6 6.3325 1.4273 0.0030 9 6 7.8151 1.4701 0.0082 10 6 8.4790 2.6953 -0.0007 11 6 9.8609 2.7303 0.0100 12 9 10.5056 3.9176 0.0075 13 6 10.5857 1.5500 0.0180 14 6 9.9302 0.3298 0.0211 15 9 10.6421 -0.8184 0.0285 16 6 8.5484 0.2851 0.0167 17 6 5.6146 2.6075 -0.1226 18 6 4.2094 2.5721 -0.1220 19 6 3.4629 3.7612 -0.2435 20 1 2.5177 3.7542 -0.7658 21 6 3.9505 4.9550 0.3087 22 7 3.3981 6.0951 -0.0092 23 14 5.3898 4.9142 1.4987 24 1 6.6579 5.0996 0.7484 25 1 5.2399 6.0055 2.4946 26 1 5.4160 3.6050 2.1992 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.8175 -0.8409 0.2109 31 1 6.2610 -0.7064 0.2129 32 1 7.9147 3.6161 -0.0118 33 1 11.6652 1.5812 0.0222 34 1 8.0381 -0.6668 0.0187 35 1 6.1332 3.5502 -0.2166 36 1 3.7350 6.9205 0.3729 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239656423.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:42 Heat of formation + Delta-G solvation = -144.155275 kcal Electronic energy + Delta-G solvation = -25463.448844 eV Core-core repulsion = 21319.805715 eV Total energy + Delta-G solvation = -4143.643129 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.08871 -50.02240 -41.15905 -40.41666 -38.65999 -37.07932 -35.74992 -33.65408 -32.66516 -31.36986 -30.41401 -28.53876 -27.28428 -25.34923 -24.20892 -23.02376 -22.67758 -21.27376 -19.69320 -18.86919 -18.77478 -18.09751 -17.73098 -17.35267 -17.09526 -17.03173 -16.94274 -16.64421 -16.35496 -15.80377 -15.57928 -15.44454 -15.20328 -14.72335 -14.37350 -14.28725 -13.98560 -13.78011 -13.63306 -13.20559 -13.00912 -12.91251 -12.82380 -12.74070 -12.52589 -12.27135 -12.08393 -11.65446 -11.59125 -11.19408 -10.89110 -10.55833 -9.85727 -9.62613 -9.11631 -9.02299 -6.64857 -0.65150 -0.10272 0.43807 0.76310 1.15516 1.29832 1.39145 1.82012 1.98202 2.06881 2.36373 2.62714 2.72155 3.26551 3.36984 3.43162 3.70640 3.88747 4.01318 4.13384 4.31831 4.37650 4.38061 4.42631 4.58026 4.65797 4.67575 4.73754 4.78076 4.91589 4.93903 5.09724 5.19051 5.27980 5.50938 5.60719 5.66890 5.74386 5.83512 6.08916 6.26089 6.54456 6.59806 7.19204 8.00700 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.004798 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.492781 B = 5833.886121 C = 7797.123140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.367 6.367 3 C 0.499 3.501 4 O -0.547 6.547 5 C -0.265 4.265 6 C -0.007 4.007 7 C -0.224 4.224 8 C 0.007 3.993 9 C 0.011 3.989 10 C -0.176 4.176 11 C 0.126 3.874 12 F -0.135 7.135 13 C -0.183 4.183 14 C 0.134 3.866 15 F -0.127 7.127 16 C -0.143 4.143 17 C -0.229 4.229 18 C 0.108 3.892 19 C -0.427 4.427 20 H 0.074 0.926 21 C 0.044 3.956 22 N -0.821 5.821 23 Si 0.950 3.050 24 H -0.240 1.240 25 H -0.273 1.273 26 H -0.245 1.245 27 H 0.050 0.950 28 H 0.138 0.862 29 H 0.052 0.948 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.131 0.869 33 H 0.173 0.827 34 H 0.170 0.830 35 H 0.112 0.888 36 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.808 -11.540 1.860 15.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.285 6.285 3 C 0.350 3.650 4 O -0.440 6.440 5 C -0.268 4.268 6 C -0.025 4.025 7 C -0.243 4.243 8 C 0.007 3.993 9 C 0.011 3.989 10 C -0.195 4.195 11 C 0.106 3.894 12 F -0.114 7.114 13 C -0.202 4.202 14 C 0.115 3.885 15 F -0.105 7.105 16 C -0.161 4.161 17 C -0.248 4.248 18 C 0.104 3.896 19 C -0.454 4.454 20 H 0.092 0.908 21 C -0.174 4.174 22 N -0.446 5.446 23 Si 0.772 3.228 24 H -0.165 1.165 25 H -0.199 1.199 26 H -0.169 1.169 27 H 0.069 0.931 28 H 0.156 0.844 29 H 0.071 0.929 30 H 0.163 0.837 31 H 0.169 0.831 32 H 0.148 0.852 33 H 0.191 0.809 34 H 0.188 0.812 35 H 0.129 0.871 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 10.541 -10.954 1.838 15.313 hybrid contribution -0.286 1.088 0.177 1.139 sum 10.255 -9.866 2.015 14.372 Atomic orbital electron populations 1.23406 0.75760 1.05267 1.01646 1.86521 1.24163 1.32486 1.85334 1.21386 0.89797 0.80884 0.72977 1.90804 1.67653 1.36767 1.48733 1.20047 0.87813 0.95287 1.23643 1.21204 0.93730 0.96505 0.91097 1.20777 0.93707 0.96553 1.13255 1.18601 0.90324 0.93916 0.96456 1.18505 0.92198 0.92006 0.96202 1.21519 0.93289 0.99801 1.04910 1.17130 0.89363 0.81079 1.01780 1.91520 1.81585 1.44453 1.93809 1.21190 1.02846 0.89424 1.06733 1.17055 0.88952 0.81458 1.01084 1.91546 1.78139 1.47160 1.93688 1.21466 0.91876 1.00052 1.02738 1.21175 0.92820 0.97534 1.13267 1.18568 0.91669 0.91503 0.87856 1.19921 1.05907 0.91411 1.28179 0.90758 1.27073 0.99263 0.93745 0.97294 1.69577 1.38824 1.00115 1.36037 0.85770 0.78276 0.79926 0.78829 1.16452 1.19906 1.16867 0.93135 0.84368 0.92949 0.83689 0.83072 0.85170 0.80919 0.81245 0.87062 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 10.57 113.37 1.20 2.12 16 2 O -0.37 -13.58 9.84 -57.31 -0.56 -14.14 16 3 C 0.50 23.17 7.86 70.17 0.55 23.72 16 4 O -0.55 -29.55 13.56 19.65 0.27 -29.29 16 5 C -0.27 -12.10 6.07 -18.48 -0.11 -12.21 16 6 C -0.01 -0.26 9.60 22.48 0.22 -0.05 16 7 C -0.22 -7.24 9.36 22.53 0.21 -7.03 16 8 C 0.01 0.27 5.86 -20.12 -0.12 0.15 16 9 C 0.01 0.34 5.87 -20.05 -0.12 0.22 16 10 C -0.18 -5.38 9.38 22.54 0.21 -5.17 16 11 C 0.13 3.28 7.29 22.34 0.16 3.44 16 12 F -0.14 -3.61 17.26 44.97 0.78 -2.84 16 13 C -0.18 -3.86 10.00 22.40 0.22 -3.63 16 14 C 0.13 2.89 7.29 22.34 0.16 3.05 16 15 F -0.13 -2.58 17.26 44.97 0.78 -1.81 16 16 C -0.14 -3.36 9.38 22.54 0.21 -3.15 16 17 C -0.23 -9.99 6.43 22.95 0.15 -9.85 16 18 C 0.11 5.39 5.23 -19.90 -0.10 5.29 16 19 C -0.43 -24.12 8.36 23.42 0.20 -23.93 16 20 H 0.07 4.77 6.20 -2.91 -0.02 4.75 16 21 C 0.04 2.35 5.46 85.37 0.47 2.82 16 22 N -0.82 -44.51 13.92 21.88 0.30 -44.21 16 23 Si 0.95 40.70 24.43 68.60 1.68 42.38 16 24 H -0.24 -9.21 5.71 99.48 0.57 -8.65 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 H -0.25 -10.68 6.78 99.48 0.67 -10.01 16 27 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.15 4.29 7.63 -2.91 -0.02 4.27 16 31 H 0.15 3.55 6.13 -2.91 -0.02 3.53 16 32 H 0.13 4.36 5.13 -2.91 -0.01 4.35 16 33 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.17 3.19 6.17 -2.91 -0.02 3.17 16 35 H 0.11 4.80 3.02 -2.91 -0.01 4.79 16 36 H 0.30 14.44 8.29 -92.71 -0.77 13.67 16 Total: -1.00 -64.22 314.92 7.74 -56.48 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 1.00 Total: 17.64 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 3.51 Total: -24.21 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.30 Total: -44.21 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -0.30 Total: -43.43 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 1.55 Total: -4.64 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 1.68 Total: 42.38 kcal Total: -64.22 7.74 -56.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239656423.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.676 kcal (2) G-P(sol) polarization free energy of solvation -64.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds