Wall clock time and date at job start Tue Mar 31 2020 12:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34830 * 116.99966 * 2 1 4 4 O 1.21556 * 120.00417 * 0.02562 * 3 2 1 5 5 C 1.47125 * 119.99701 * 180.02562 * 3 2 1 6 6 C 1.39538 * 120.44626 * 354.26053 * 5 3 2 7 7 C 1.37787 * 120.19538 * 180.29800 * 6 5 3 8 8 C 1.39768 * 121.15256 * 359.44480 * 7 6 5 9 9 C 1.48234 * 119.54743 * 180.26133 * 8 7 6 10 10 C 1.39430 * 120.11048 * 130.01406 * 9 8 7 11 11 C 1.37913 * 119.91792 * 179.72435 * 10 9 8 12 12 C 1.38631 * 120.15859 * 0.57802 * 11 10 9 13 13 F 1.35103 * 119.88301 * 179.71902 * 12 11 10 14 14 C 1.38481 * 120.22953 * 359.69916 * 12 11 10 15 15 C 1.38220 * 120.07696 * 359.97438 * 14 12 11 16 16 F 1.35099 * 120.08177 * 179.97438 * 15 14 12 17 17 C 1.38768 * 120.90265 * 0.56285 * 8 7 6 18 18 C 1.40537 * 119.73097 * 359.72446 * 17 8 7 19 19 C 1.40922 * 120.54616 * 179.97438 * 18 17 8 20 20 H 1.07998 * 119.99243 * 146.84130 * 19 18 17 21 21 C 1.40267 * 120.00050 * 326.84220 * 19 18 17 22 22 N 1.30623 * 120.00224 * 166.57216 * 21 19 18 23 23 Si 1.86802 * 120.00201 * 346.56977 * 21 19 18 24 24 H 1.48507 * 109.47150 * 89.96842 * 23 21 19 25 25 H 1.48495 * 109.47358 * 209.96941 * 23 21 19 26 26 H 1.48500 * 109.47051 * 329.96891 * 23 21 19 27 27 H 1.09003 * 109.47439 * 59.99606 * 1 2 3 28 28 H 1.08996 * 109.47614 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46873 * 300.00174 * 1 2 3 30 30 H 1.08002 * 119.90433 * 0.02562 * 6 5 3 31 31 H 1.08001 * 119.42367 * 179.70130 * 7 6 5 32 32 H 1.07998 * 120.04025 * 0.02891 * 10 9 8 33 33 H 1.08001 * 119.92032 * 180.29801 * 11 10 9 34 34 H 1.07996 * 119.96188 * 180.02562 * 14 12 11 35 35 H 1.08001 * 120.13769 * 179.74872 * 17 8 7 36 36 H 0.96997 * 120.00117 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4021 2.2208 0.0005 5 6 3.5333 1.2783 -0.0006 6 6 4.3021 0.1199 0.1192 7 6 5.6777 0.1986 0.1242 8 6 6.3321 1.4272 -0.0009 9 6 7.8138 1.4700 0.0031 10 6 8.4963 2.1647 -0.9947 11 6 9.8747 2.2067 -0.9840 12 6 10.5838 1.5497 0.0098 13 9 11.9342 1.5898 0.0117 14 6 9.9126 0.8530 1.0006 15 6 8.5311 0.8102 1.0030 16 9 7.8763 0.1301 1.9693 17 6 5.6137 2.6082 -0.1226 18 6 4.2088 2.5722 -0.1263 19 6 3.4622 3.7611 -0.2483 20 1 2.5147 3.7528 -0.7665 21 6 3.9497 4.9552 0.3031 22 7 3.4057 6.0963 -0.0256 23 14 5.3767 4.9134 1.5078 24 1 6.6567 5.0249 0.7631 25 1 5.2562 6.0486 2.4575 26 1 5.3518 3.6336 2.2606 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.8174 -0.8407 0.2126 31 1 6.2605 -0.7054 0.2224 32 1 7.9459 2.6735 -1.7723 33 1 10.4032 2.7489 -1.7541 34 1 10.4693 0.3431 1.7729 35 1 6.1321 3.5512 -0.2145 36 1 3.7426 6.9220 0.3560 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239678619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:46 Heat of formation + Delta-G solvation = -131.914923 kcal Electronic energy + Delta-G solvation = -25652.647991 eV Core-core repulsion = 21509.535644 eV Total energy + Delta-G solvation = -4143.112347 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.01902 -48.76889 -39.42609 -38.90953 -37.21124 -35.35424 -33.95555 -32.07311 -30.90176 -30.60968 -28.68755 -27.04557 -25.54832 -23.69368 -22.94345 -21.49127 -21.35248 -19.64927 -18.17675 -17.72056 -16.97015 -16.92998 -16.22567 -15.99975 -15.84228 -15.52289 -15.43628 -15.18783 -14.90589 -14.33630 -14.01523 -13.92034 -13.80708 -13.27098 -12.95738 -12.72756 -12.54320 -12.25972 -12.14595 -11.89424 -11.72134 -11.46051 -11.36739 -11.03558 -10.92638 -10.63385 -10.43261 -10.06053 -9.95581 -9.40812 -9.08869 -9.05467 -8.75406 -7.90997 -7.60125 -7.20430 -4.73974 0.82645 1.05121 1.82893 2.48918 2.94116 3.03353 3.14772 3.36013 3.62813 3.67908 3.77343 3.90166 4.32562 4.46434 4.65230 4.80729 4.87455 5.13685 5.24905 5.54978 5.63125 5.76514 5.77988 5.79225 5.85505 5.96167 6.01087 6.05134 6.19789 6.27629 6.37037 6.55149 6.78012 6.90343 6.94507 7.20776 7.26250 7.47550 7.51417 7.77392 8.15909 8.35807 8.54851 8.95134 9.75903 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013925 B = 0.004711 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.340968 B = 5941.600937 C = 7331.954647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.374 6.374 3 C 0.501 3.499 4 O -0.509 6.509 5 C -0.245 4.245 6 C -0.009 4.009 7 C -0.241 4.241 8 C 0.003 3.997 9 C -0.070 4.070 10 C -0.054 4.054 11 C -0.162 4.162 12 C 0.115 3.885 13 F -0.137 7.137 14 C -0.194 4.194 15 C 0.137 3.863 16 F -0.122 7.122 17 C -0.213 4.213 18 C 0.118 3.882 19 C -0.381 4.381 20 H 0.121 0.879 21 C 0.079 3.921 22 N -0.774 5.774 23 Si 0.905 3.095 24 H -0.262 1.262 25 H -0.284 1.284 26 H -0.240 1.240 27 H 0.055 0.945 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.114 0.886 36 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.452 -7.103 0.023 11.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.293 6.293 3 C 0.351 3.649 4 O -0.399 6.399 5 C -0.247 4.247 6 C -0.028 4.028 7 C -0.261 4.261 8 C 0.002 3.998 9 C -0.071 4.071 10 C -0.072 4.072 11 C -0.181 4.181 12 C 0.095 3.905 13 F -0.116 7.116 14 C -0.213 4.213 15 C 0.117 3.883 16 F -0.100 7.100 17 C -0.232 4.232 18 C 0.113 3.887 19 C -0.406 4.406 20 H 0.138 0.862 21 C -0.144 4.144 22 N -0.395 5.395 23 Si 0.730 3.270 24 H -0.188 1.188 25 H -0.211 1.211 26 H -0.163 1.163 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.130 0.870 31 H 0.119 0.881 32 H 0.166 0.834 33 H 0.159 0.841 34 H 0.164 0.836 35 H 0.131 0.869 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.158 -6.522 0.055 10.445 hybrid contribution 0.521 0.085 0.719 0.892 sum 8.679 -6.437 0.774 10.833 Atomic orbital electron populations 1.22996 0.78347 1.02135 1.01901 1.86574 1.21723 1.34844 1.86109 1.21198 0.89440 0.80426 0.73841 1.90799 1.66769 1.35140 1.47199 1.19655 0.87099 0.94455 1.23518 1.20828 0.93167 0.96435 0.92356 1.20148 0.93833 0.95305 1.16769 1.18233 0.88352 0.94442 0.98750 1.19320 0.94705 0.98339 0.94783 1.21130 0.92771 0.95958 0.97336 1.21124 0.94651 1.02635 0.99717 1.17310 0.76805 0.99759 0.96586 1.91501 1.28830 1.94942 1.96286 1.20890 0.93167 1.05378 1.01906 1.17348 0.88896 0.94459 0.87584 1.91545 1.81081 1.76892 1.60496 1.21141 0.93664 0.95984 1.12368 1.18329 0.90459 0.91457 0.88409 1.20146 1.06406 0.89258 1.24836 0.86154 1.26428 0.97068 0.94456 0.96448 1.69552 1.36613 0.99402 1.33956 0.86420 0.80136 0.79931 0.80480 1.18761 1.21072 1.16305 0.92670 0.89324 0.92692 0.86991 0.88084 0.83444 0.84069 0.83649 0.86893 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.57 101.05 1.07 1.68 16 2 O -0.37 -7.29 9.84 -40.85 -0.40 -7.70 16 3 C 0.50 11.61 7.86 34.34 0.27 11.88 16 4 O -0.51 -13.11 13.56 -19.31 -0.26 -13.37 16 5 C -0.24 -5.70 6.07 -102.48 -0.62 -6.32 16 6 C -0.01 -0.19 9.60 -39.26 -0.38 -0.57 16 7 C -0.24 -4.75 8.77 -39.17 -0.34 -5.09 16 8 C 0.00 0.06 5.32 -105.02 -0.56 -0.50 16 9 C -0.07 -1.20 5.45 -104.83 -0.57 -1.77 16 10 C -0.05 -0.78 9.47 -39.26 -0.37 -1.15 16 11 C -0.16 -2.01 10.01 -39.56 -0.40 -2.40 16 12 C 0.11 1.48 7.30 -39.35 -0.29 1.19 16 13 F -0.14 -1.71 17.26 2.25 0.04 -1.67 16 14 C -0.19 -2.57 9.99 -39.50 -0.39 -2.97 16 15 C 0.14 2.16 7.12 -39.07 -0.28 1.89 16 16 F -0.12 -2.06 15.82 2.25 0.04 -2.02 16 17 C -0.21 -4.72 6.59 -38.52 -0.25 -4.97 16 18 C 0.12 2.89 5.23 -104.69 -0.55 2.35 16 19 C -0.38 -10.06 8.37 -37.80 -0.32 -10.37 16 20 H 0.12 3.50 6.19 -52.49 -0.32 3.18 16 21 C 0.08 1.99 5.46 -17.30 -0.09 1.89 16 22 N -0.77 -19.56 13.92 55.56 0.77 -18.79 16 23 Si 0.91 19.71 24.52 -169.99 -4.17 15.54 16 24 H -0.26 -5.34 6.55 56.52 0.37 -4.97 16 25 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.24 -5.47 6.94 56.52 0.39 -5.08 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.83 8.14 -51.92 -0.42 0.40 16 30 H 0.11 2.03 7.63 -52.49 -0.40 1.63 16 31 H 0.10 1.80 7.67 -52.49 -0.40 1.39 16 32 H 0.15 1.96 8.03 -52.49 -0.42 1.54 16 33 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.11 2.44 4.68 -52.49 -0.25 2.19 16 36 H 0.29 6.60 8.29 -40.82 -0.34 6.26 16 LS Contribution 321.70 15.07 4.85 4.85 Total: -1.00 -28.02 321.70 -6.29 -34.32 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -3.08 Total: 4.10 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -4.07 Total: -15.25 kcal Atomic # 7 Polarization: -19.56 SS G_CDS: 0.77 Total: -18.79 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.66 Total: -21.07 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.07 Total: -3.69 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -4.17 Total: 15.54 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.02 -6.29 -34.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239678619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.597 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds