Wall clock time and date at job start Tue Mar 31 2020 12:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34830 * 116.99966 * 2 1 4 4 O 1.21556 * 120.00417 * 0.02562 * 3 2 1 5 5 C 1.47125 * 119.99701 * 180.02562 * 3 2 1 6 6 C 1.39538 * 120.44626 * 354.26053 * 5 3 2 7 7 C 1.37787 * 120.19538 * 180.29800 * 6 5 3 8 8 C 1.39768 * 121.15256 * 359.44480 * 7 6 5 9 9 C 1.48234 * 119.54743 * 180.26133 * 8 7 6 10 10 C 1.39430 * 120.11048 * 130.01406 * 9 8 7 11 11 C 1.37913 * 119.91792 * 179.72435 * 10 9 8 12 12 C 1.38631 * 120.15859 * 0.57802 * 11 10 9 13 13 F 1.35103 * 119.88301 * 179.71902 * 12 11 10 14 14 C 1.38481 * 120.22953 * 359.69916 * 12 11 10 15 15 C 1.38220 * 120.07696 * 359.97438 * 14 12 11 16 16 F 1.35099 * 120.08177 * 179.97438 * 15 14 12 17 17 C 1.38768 * 120.90265 * 0.56285 * 8 7 6 18 18 C 1.40537 * 119.73097 * 359.72446 * 17 8 7 19 19 C 1.40922 * 120.54616 * 179.97438 * 18 17 8 20 20 H 1.07998 * 119.99243 * 146.84130 * 19 18 17 21 21 C 1.40267 * 120.00050 * 326.84220 * 19 18 17 22 22 N 1.30623 * 120.00224 * 166.57216 * 21 19 18 23 23 Si 1.86802 * 120.00201 * 346.56977 * 21 19 18 24 24 H 1.48507 * 109.47150 * 89.96842 * 23 21 19 25 25 H 1.48495 * 109.47358 * 209.96941 * 23 21 19 26 26 H 1.48500 * 109.47051 * 329.96891 * 23 21 19 27 27 H 1.09003 * 109.47439 * 59.99606 * 1 2 3 28 28 H 1.08996 * 109.47614 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46873 * 300.00174 * 1 2 3 30 30 H 1.08002 * 119.90433 * 0.02562 * 6 5 3 31 31 H 1.08001 * 119.42367 * 179.70130 * 7 6 5 32 32 H 1.07998 * 120.04025 * 0.02891 * 10 9 8 33 33 H 1.08001 * 119.92032 * 180.29801 * 11 10 9 34 34 H 1.07996 * 119.96188 * 180.02562 * 14 12 11 35 35 H 1.08001 * 120.13769 * 179.74872 * 17 8 7 36 36 H 0.96997 * 120.00117 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4021 2.2208 0.0005 5 6 3.5333 1.2783 -0.0006 6 6 4.3021 0.1199 0.1192 7 6 5.6777 0.1986 0.1242 8 6 6.3321 1.4272 -0.0009 9 6 7.8138 1.4700 0.0031 10 6 8.4963 2.1647 -0.9947 11 6 9.8747 2.2067 -0.9840 12 6 10.5838 1.5497 0.0098 13 9 11.9342 1.5898 0.0117 14 6 9.9126 0.8530 1.0006 15 6 8.5311 0.8102 1.0030 16 9 7.8763 0.1301 1.9693 17 6 5.6137 2.6082 -0.1226 18 6 4.2088 2.5722 -0.1263 19 6 3.4622 3.7611 -0.2483 20 1 2.5147 3.7528 -0.7665 21 6 3.9497 4.9552 0.3031 22 7 3.4057 6.0963 -0.0256 23 14 5.3767 4.9134 1.5078 24 1 6.6567 5.0249 0.7631 25 1 5.2562 6.0486 2.4575 26 1 5.3518 3.6336 2.2606 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.8174 -0.8407 0.2126 31 1 6.2605 -0.7054 0.2224 32 1 7.9459 2.6735 -1.7723 33 1 10.4032 2.7489 -1.7541 34 1 10.4693 0.3431 1.7729 35 1 6.1321 3.5512 -0.2145 36 1 3.7426 6.9220 0.3560 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239678619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:46 Heat of formation + Delta-G solvation = -145.914929 kcal Electronic energy + Delta-G solvation = -25653.255077 eV Core-core repulsion = 21509.535644 eV Total energy + Delta-G solvation = -4143.719433 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.02018 -49.98876 -41.12787 -40.20246 -38.74281 -37.08793 -35.74396 -33.52407 -32.51020 -31.84612 -30.09086 -28.45681 -27.26673 -25.06727 -24.12960 -23.03611 -22.90501 -21.28362 -19.60031 -19.15240 -18.64073 -18.12471 -17.73430 -17.49302 -17.05877 -16.97865 -16.74417 -16.47077 -16.30322 -15.66989 -15.55904 -15.36048 -15.06873 -14.66288 -14.56533 -14.29103 -14.00096 -13.84261 -13.57699 -13.29152 -13.04980 -12.88932 -12.77834 -12.58685 -12.51377 -12.21636 -12.13261 -11.74460 -11.60502 -11.14737 -10.87263 -10.23405 -10.00297 -9.63206 -9.16170 -9.02534 -6.63885 -0.44737 -0.00800 0.25511 0.75790 1.19079 1.31208 1.40459 1.83605 2.00587 2.07322 2.34294 2.54578 2.81906 3.30606 3.38119 3.51403 3.63821 3.90435 4.10435 4.19007 4.29305 4.37094 4.41162 4.51126 4.64290 4.69236 4.71120 4.79771 4.81628 4.92377 4.98658 5.13178 5.20807 5.28286 5.50201 5.57788 5.67260 5.76758 5.81598 6.07624 6.26267 6.55728 6.61020 7.18628 8.01098 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013925 B = 0.004711 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.340968 B = 5941.600937 C = 7331.954647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.500 3.500 4 O -0.546 6.546 5 C -0.269 4.269 6 C -0.007 4.007 7 C -0.228 4.228 8 C 0.014 3.986 9 C -0.101 4.101 10 C -0.054 4.054 11 C -0.148 4.148 12 C 0.124 3.876 13 F -0.131 7.131 14 C -0.185 4.185 15 C 0.126 3.874 16 F -0.132 7.132 17 C -0.228 4.228 18 C 0.110 3.890 19 C -0.425 4.425 20 H 0.076 0.924 21 C 0.049 3.951 22 N -0.818 5.818 23 Si 0.954 3.046 24 H -0.236 1.236 25 H -0.272 1.272 26 H -0.259 1.259 27 H 0.051 0.949 28 H 0.137 0.863 29 H 0.052 0.948 30 H 0.139 0.861 31 H 0.128 0.872 32 H 0.154 0.846 33 H 0.173 0.827 34 H 0.169 0.831 35 H 0.117 0.883 36 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.764 -9.205 0.392 14.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.287 6.287 3 C 0.351 3.649 4 O -0.439 6.439 5 C -0.272 4.272 6 C -0.025 4.025 7 C -0.247 4.247 8 C 0.013 3.987 9 C -0.102 4.102 10 C -0.072 4.072 11 C -0.167 4.167 12 C 0.104 3.896 13 F -0.109 7.109 14 C -0.204 4.204 15 C 0.107 3.893 16 F -0.111 7.111 17 C -0.247 4.247 18 C 0.106 3.894 19 C -0.452 4.452 20 H 0.094 0.906 21 C -0.169 4.169 22 N -0.442 5.442 23 Si 0.776 3.224 24 H -0.160 1.160 25 H -0.198 1.198 26 H -0.183 1.183 27 H 0.070 0.930 28 H 0.155 0.845 29 H 0.071 0.929 30 H 0.157 0.843 31 H 0.146 0.854 32 H 0.172 0.828 33 H 0.191 0.809 34 H 0.187 0.813 35 H 0.135 0.865 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.473 -8.647 0.410 14.373 hybrid contribution -0.422 0.418 0.561 0.817 sum 11.051 -8.229 0.971 13.812 Atomic orbital electron populations 1.23406 0.75728 1.05240 1.01704 1.86532 1.24223 1.32586 1.85363 1.21336 0.89714 0.80873 0.72992 1.90793 1.67596 1.36647 1.48827 1.20007 0.87823 0.95218 1.24129 1.21114 0.93549 0.96533 0.91327 1.20589 0.93734 0.96342 1.14021 1.18544 0.90568 0.93621 0.95947 1.19239 0.92861 1.01108 0.96963 1.21239 0.93729 0.95351 0.96869 1.21394 0.93746 1.01638 0.99921 1.17388 0.77029 0.98940 0.96214 1.91531 1.28401 1.94783 1.96197 1.21061 0.92135 1.04828 1.02374 1.17441 0.89744 0.94803 0.87353 1.91518 1.81445 1.77205 1.60914 1.21154 0.92642 0.97202 1.13705 1.18573 0.91763 0.91361 0.87687 1.19902 1.05775 0.91290 1.28254 0.90633 1.26998 0.98986 0.93722 0.97243 1.69572 1.38621 1.00067 1.35928 0.85701 0.78772 0.79138 0.78816 1.16038 1.19773 1.18296 0.92991 0.84455 0.92940 0.84305 0.85377 0.82809 0.80943 0.81327 0.86543 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 10.57 113.37 1.20 2.16 16 2 O -0.37 -14.25 9.84 -57.43 -0.57 -14.82 16 3 C 0.50 23.92 7.86 70.15 0.55 24.47 16 4 O -0.55 -29.92 13.56 19.65 0.27 -29.65 16 5 C -0.27 -12.79 6.07 -18.48 -0.11 -12.91 16 6 C -0.01 -0.28 9.60 22.48 0.22 -0.07 16 7 C -0.23 -8.45 8.77 22.53 0.20 -8.25 16 8 C 0.01 0.52 5.32 -20.12 -0.11 0.42 16 9 C -0.10 -3.15 5.45 -20.00 -0.11 -3.26 16 10 C -0.05 -1.38 9.47 22.48 0.21 -1.16 16 11 C -0.15 -3.01 10.01 22.29 0.22 -2.79 16 12 C 0.12 2.62 7.30 22.42 0.16 2.78 16 13 F -0.13 -2.66 17.26 44.97 0.78 -1.88 16 14 C -0.18 -4.15 9.99 22.32 0.22 -3.92 16 15 C 0.13 3.59 7.12 22.60 0.16 3.75 16 16 F -0.13 -4.11 15.82 44.97 0.71 -3.40 16 17 C -0.23 -10.11 6.59 22.96 0.15 -9.96 16 18 C 0.11 5.60 5.23 -19.91 -0.10 5.49 16 19 C -0.43 -24.04 8.37 23.42 0.20 -23.85 16 20 H 0.08 4.84 6.19 -2.91 -0.02 4.82 16 21 C 0.05 2.59 5.46 85.37 0.47 3.06 16 22 N -0.82 -43.77 13.92 21.88 0.30 -43.46 16 23 Si 0.95 41.18 24.52 68.60 1.68 42.86 16 24 H -0.24 -9.08 6.55 99.48 0.65 -8.42 16 25 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 26 H -0.26 -11.81 6.94 99.48 0.69 -11.12 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.14 4.68 7.63 -2.91 -0.02 4.66 16 31 H 0.13 4.09 7.67 -2.91 -0.02 4.07 16 32 H 0.15 3.70 8.03 -2.91 -0.02 3.67 16 33 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.17 2.96 8.06 -2.91 -0.02 2.93 16 35 H 0.12 4.99 4.68 -2.91 -0.01 4.97 16 36 H 0.30 14.25 8.29 -92.71 -0.77 13.48 16 Total: -1.00 -65.23 321.70 7.78 -57.45 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 1.08 Total: 16.93 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 3.53 Total: -24.03 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.30 Total: -43.46 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -0.30 Total: -44.47 kcal Atomic # 9 Polarization: -6.77 SS G_CDS: 1.49 Total: -5.28 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 1.68 Total: 42.86 kcal Total: -65.23 7.78 -57.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239678619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.461 kcal (2) G-P(sol) polarization free energy of solvation -65.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds