Wall clock time and date at job start Tue Mar 31 2020 12:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34832 * 117.00275 * 2 1 4 4 O 1.21551 * 120.00038 * 359.97438 * 3 2 1 5 5 C 1.47140 * 120.00184 * 180.02562 * 3 2 1 6 6 C 1.39532 * 120.44596 * 354.33237 * 5 3 2 7 7 C 1.37804 * 120.19365 * 180.29829 * 6 5 3 8 8 C 1.39760 * 121.15284 * 359.44377 * 7 6 5 9 9 C 1.48265 * 119.54759 * 180.26376 * 8 7 6 10 10 C 1.39431 * 120.12623 * 310.29317 * 9 8 7 11 11 C 1.37957 * 119.94355 * 179.97438 * 10 9 8 12 12 C 1.38375 * 120.20346 * 359.97438 * 11 10 9 13 13 C 1.38434 * 120.25619 * 0.02669 * 12 11 10 14 14 F 1.35101 * 119.97136 * 179.97438 * 13 12 11 15 15 C 1.38502 * 120.05179 * 359.66862 * 13 12 11 16 16 F 1.35104 * 120.09862 * 180.31982 * 15 13 12 17 17 C 1.38748 * 120.90536 * 0.56160 * 8 7 6 18 18 C 1.40552 * 119.73143 * 359.72460 * 17 8 7 19 19 C 1.40912 * 120.54700 * 180.02562 * 18 17 8 20 20 H 1.07997 * 120.00172 * 147.57334 * 19 18 17 21 21 C 1.40286 * 119.99656 * 327.56858 * 19 18 17 22 22 N 1.30614 * 119.99972 * 350.32941 * 21 19 18 23 23 Si 1.86797 * 119.99691 * 170.32590 * 21 19 18 24 24 H 1.48505 * 109.46978 * 60.00251 * 23 21 19 25 25 H 1.48496 * 109.47088 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47371 * 300.00355 * 23 21 19 27 27 H 1.08995 * 109.47292 * 59.99180 * 1 2 3 28 28 H 1.08994 * 109.47325 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46851 * 299.99907 * 1 2 3 30 30 H 1.07997 * 119.90142 * 0.02758 * 6 5 3 31 31 H 1.07996 * 119.42404 * 179.72528 * 7 6 5 32 32 H 1.07997 * 120.03003 * 359.97438 * 10 9 8 33 33 H 1.08002 * 119.90384 * 180.02562 * 11 10 9 34 34 H 1.07997 * 119.86994 * 179.97438 * 12 11 10 35 35 H 1.07998 * 120.13291 * 179.70302 * 17 8 7 36 36 H 0.97006 * 119.99916 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4022 2.2208 -0.0005 5 6 3.5335 1.2783 -0.0006 6 6 4.3023 0.1199 0.1177 7 6 5.6780 0.1986 0.1227 8 6 6.3324 1.4274 -0.0009 9 6 7.8144 1.4702 0.0030 10 6 8.5310 0.8098 1.0002 11 6 9.9099 0.8517 0.9999 12 6 10.5850 1.5470 0.0122 13 6 9.8819 2.2057 -0.9819 14 9 10.5469 2.8832 -1.9431 15 6 8.4976 2.1653 -0.9954 16 9 7.8107 2.8024 -1.9688 17 6 5.6141 2.6084 -0.1211 18 6 4.2090 2.5723 -0.1248 19 6 3.4624 3.7612 -0.2464 20 1 2.5094 3.7508 -0.7543 21 6 3.9572 4.9583 0.2923 22 7 5.0095 4.9406 1.0658 23 14 3.1111 6.5775 -0.0969 24 1 1.7038 6.5265 0.3746 25 1 3.8227 7.6854 0.5896 26 1 3.1336 6.8078 -1.5637 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 3.8176 -0.8408 0.2099 31 1 6.2609 -0.7054 0.2194 32 1 8.0070 0.2659 1.7722 33 1 10.4643 0.3396 1.7725 34 1 11.6646 1.5766 0.0174 35 1 6.1325 3.5515 -0.2111 36 1 5.3518 5.7684 1.4380 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239707699.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:50 Heat of formation + Delta-G solvation = -134.123112 kcal Electronic energy + Delta-G solvation = -25729.926410 eV Core-core repulsion = 21586.718309 eV Total energy + Delta-G solvation = -4143.208101 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.12755 -48.15384 -39.30854 -38.78474 -37.02680 -35.27706 -34.00595 -31.99561 -30.17248 -29.80637 -28.81589 -27.06725 -25.59152 -23.68186 -22.55622 -21.48210 -21.02056 -19.61559 -17.93131 -17.29077 -16.78788 -16.72862 -16.46109 -15.97186 -15.82099 -15.41731 -15.23286 -14.69132 -14.58774 -14.36367 -13.95666 -13.70559 -13.39549 -12.95193 -12.75557 -12.58596 -12.44164 -11.98070 -11.89811 -11.71796 -11.59838 -11.37104 -11.23706 -11.11030 -10.81332 -10.66458 -10.31983 -9.98542 -9.89468 -9.48888 -8.94886 -8.83146 -8.50744 -7.64445 -7.46028 -7.05177 -4.62784 1.06280 1.18117 2.06299 2.70922 2.98386 3.03219 3.12425 3.55195 3.71159 3.79710 3.84552 4.05175 4.44282 4.60636 4.84800 5.01624 5.19478 5.26268 5.37605 5.57373 5.65099 5.80845 5.91614 5.96709 6.04459 6.15383 6.19324 6.31318 6.39814 6.45616 6.76910 6.86164 6.94357 6.98638 7.19301 7.33765 7.48451 7.72350 7.73789 7.92164 8.38170 8.51828 8.60690 9.03697 9.86857 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.011998 B = 0.004899 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.118018 B = 5714.628512 C = 7417.377801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.374 6.374 3 C 0.503 3.497 4 O -0.520 6.520 5 C -0.259 4.259 6 C -0.026 4.026 7 C -0.237 4.237 8 C -0.038 4.038 9 C -0.019 4.019 10 C -0.094 4.094 11 C -0.104 4.104 12 C -0.143 4.143 13 C 0.062 3.938 14 F -0.135 7.135 15 C 0.073 3.927 16 F -0.120 7.120 17 C -0.117 4.117 18 C 0.145 3.855 19 C -0.397 4.397 20 H 0.108 0.892 21 C 0.067 3.933 22 N -0.773 5.773 23 Si 0.922 3.078 24 H -0.259 1.259 25 H -0.276 1.276 26 H -0.259 1.259 27 H 0.053 0.947 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.126 0.874 36 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.025 -5.961 0.687 8.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.293 6.293 3 C 0.354 3.646 4 O -0.411 6.411 5 C -0.262 4.262 6 C -0.045 4.045 7 C -0.256 4.256 8 C -0.039 4.039 9 C -0.020 4.020 10 C -0.112 4.112 11 C -0.122 4.122 12 C -0.162 4.162 13 C 0.042 3.958 14 F -0.114 7.114 15 C 0.053 3.947 16 F -0.098 7.098 17 C -0.136 4.136 18 C 0.141 3.859 19 C -0.424 4.424 20 H 0.126 0.874 21 C -0.154 4.154 22 N -0.397 5.397 23 Si 0.745 3.255 24 H -0.183 1.183 25 H -0.200 1.200 26 H -0.184 1.184 27 H 0.072 0.928 28 H 0.106 0.894 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.116 0.884 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.144 0.856 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.945 -5.445 0.757 8.097 hybrid contribution -0.445 1.017 -0.357 1.166 sum 5.500 -4.428 0.400 7.072 Atomic orbital electron populations 1.22971 0.78623 1.02037 1.01748 1.86589 1.21506 1.35031 1.86143 1.21271 0.89515 0.80229 0.73536 1.90731 1.66906 1.35292 1.48151 1.19737 0.86829 0.94892 1.24714 1.20698 0.93182 0.96208 0.94380 1.20085 0.93690 0.95028 1.16834 1.18328 0.88239 0.94779 1.02531 1.19131 0.94779 0.95217 0.92827 1.21254 0.93444 0.98677 0.97857 1.20944 0.94135 0.98961 0.98154 1.20959 1.00609 0.99811 0.94809 1.17611 0.88380 0.99286 0.90562 1.91493 1.80307 1.77963 1.61604 1.17803 0.87775 0.99177 0.89995 1.91550 1.79266 1.79229 1.59788 1.21423 0.93465 0.95985 1.02733 1.18333 0.90974 0.90358 0.86258 1.20265 1.05085 0.90836 1.26199 0.87379 1.26245 0.94198 1.01967 0.93000 1.69674 1.18641 1.30915 1.20454 0.86107 0.80493 0.78733 0.80166 1.18286 1.20040 1.18350 0.92799 0.89421 0.92793 0.87493 0.88379 0.84217 0.84622 0.84351 0.85611 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.57 101.05 1.07 1.70 16 2 O -0.37 -7.50 9.84 -40.85 -0.40 -7.91 16 3 C 0.50 11.95 7.86 34.34 0.27 12.22 16 4 O -0.52 -13.38 13.54 -19.30 -0.26 -13.64 16 5 C -0.26 -6.32 6.07 -102.48 -0.62 -6.94 16 6 C -0.03 -0.56 9.60 -39.26 -0.38 -0.94 16 7 C -0.24 -4.85 9.40 -39.17 -0.37 -5.21 16 8 C -0.04 -0.82 5.32 -105.02 -0.56 -1.38 16 9 C -0.02 -0.34 5.45 -104.85 -0.57 -0.91 16 10 C -0.09 -1.38 9.45 -39.24 -0.37 -1.75 16 11 C -0.10 -1.23 10.03 -39.63 -0.40 -1.63 16 12 C -0.14 -1.80 10.02 -39.46 -0.40 -2.20 16 13 C 0.06 0.99 7.30 -39.41 -0.29 0.70 16 14 F -0.14 -2.20 17.18 2.25 0.04 -2.16 16 15 C 0.07 1.36 7.15 -39.01 -0.28 1.08 16 16 F -0.12 -2.51 15.79 2.25 0.04 -2.48 16 17 C -0.12 -2.89 7.42 -38.52 -0.29 -3.17 16 18 C 0.14 3.78 5.67 -104.69 -0.59 3.19 16 19 C -0.40 -10.50 7.85 -37.80 -0.30 -10.80 16 20 H 0.11 2.93 5.95 -52.49 -0.31 2.62 16 21 C 0.07 1.65 5.26 -17.30 -0.09 1.56 16 22 N -0.77 -19.08 11.06 55.56 0.61 -18.47 16 23 Si 0.92 18.78 29.57 -169.99 -5.03 13.75 16 24 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 26 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.11 2.04 7.63 -52.49 -0.40 1.64 16 31 H 0.10 1.72 7.99 -52.49 -0.42 1.30 16 32 H 0.14 1.85 8.02 -52.49 -0.42 1.43 16 33 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.13 3.23 6.19 -52.49 -0.32 2.91 16 36 H 0.29 6.47 8.29 -40.82 -0.34 6.13 16 LS Contribution 327.31 15.07 4.93 4.93 Total: -1.00 -28.80 327.31 -7.35 -36.15 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -3.13 Total: 4.31 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -4.16 Total: -14.50 kcal Atomic # 7 Polarization: -19.08 SS G_CDS: 0.61 Total: -18.47 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.66 Total: -21.54 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.07 Total: -4.64 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.80 -7.35 -36.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239707699.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.970 kcal (2) G-P(sol) polarization free energy of solvation -28.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds