Wall clock time and date at job start Tue Mar 31 2020 12:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34832 * 117.00275 * 2 1 4 4 O 1.21551 * 120.00038 * 359.97438 * 3 2 1 5 5 C 1.47140 * 120.00184 * 180.02562 * 3 2 1 6 6 C 1.39532 * 120.44596 * 354.33237 * 5 3 2 7 7 C 1.37804 * 120.19365 * 180.29829 * 6 5 3 8 8 C 1.39760 * 121.15284 * 359.44377 * 7 6 5 9 9 C 1.48265 * 119.54759 * 180.26376 * 8 7 6 10 10 C 1.39431 * 120.12623 * 310.29317 * 9 8 7 11 11 C 1.37957 * 119.94355 * 179.97438 * 10 9 8 12 12 C 1.38375 * 120.20346 * 359.97438 * 11 10 9 13 13 C 1.38434 * 120.25619 * 0.02669 * 12 11 10 14 14 F 1.35101 * 119.97136 * 179.97438 * 13 12 11 15 15 C 1.38502 * 120.05179 * 359.66862 * 13 12 11 16 16 F 1.35104 * 120.09862 * 180.31982 * 15 13 12 17 17 C 1.38748 * 120.90536 * 0.56160 * 8 7 6 18 18 C 1.40552 * 119.73143 * 359.72460 * 17 8 7 19 19 C 1.40912 * 120.54700 * 180.02562 * 18 17 8 20 20 H 1.07997 * 120.00172 * 147.57334 * 19 18 17 21 21 C 1.40286 * 119.99656 * 327.56858 * 19 18 17 22 22 N 1.30614 * 119.99972 * 350.32941 * 21 19 18 23 23 Si 1.86797 * 119.99691 * 170.32590 * 21 19 18 24 24 H 1.48505 * 109.46978 * 60.00251 * 23 21 19 25 25 H 1.48496 * 109.47088 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47371 * 300.00355 * 23 21 19 27 27 H 1.08995 * 109.47292 * 59.99180 * 1 2 3 28 28 H 1.08994 * 109.47325 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46851 * 299.99907 * 1 2 3 30 30 H 1.07997 * 119.90142 * 0.02758 * 6 5 3 31 31 H 1.07996 * 119.42404 * 179.72528 * 7 6 5 32 32 H 1.07997 * 120.03003 * 359.97438 * 10 9 8 33 33 H 1.08002 * 119.90384 * 180.02562 * 11 10 9 34 34 H 1.07997 * 119.86994 * 179.97438 * 12 11 10 35 35 H 1.07998 * 120.13291 * 179.70302 * 17 8 7 36 36 H 0.97006 * 119.99916 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4022 2.2208 -0.0005 5 6 3.5335 1.2783 -0.0006 6 6 4.3023 0.1199 0.1177 7 6 5.6780 0.1986 0.1227 8 6 6.3324 1.4274 -0.0009 9 6 7.8144 1.4702 0.0030 10 6 8.5310 0.8098 1.0002 11 6 9.9099 0.8517 0.9999 12 6 10.5850 1.5470 0.0122 13 6 9.8819 2.2057 -0.9819 14 9 10.5469 2.8832 -1.9431 15 6 8.4976 2.1653 -0.9954 16 9 7.8107 2.8024 -1.9688 17 6 5.6141 2.6084 -0.1211 18 6 4.2090 2.5723 -0.1248 19 6 3.4624 3.7612 -0.2464 20 1 2.5094 3.7508 -0.7543 21 6 3.9572 4.9583 0.2923 22 7 5.0095 4.9406 1.0658 23 14 3.1111 6.5775 -0.0969 24 1 1.7038 6.5265 0.3746 25 1 3.8227 7.6854 0.5896 26 1 3.1336 6.8078 -1.5637 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 3.8176 -0.8408 0.2099 31 1 6.2609 -0.7054 0.2194 32 1 8.0070 0.2659 1.7722 33 1 10.4643 0.3396 1.7725 34 1 11.6646 1.5766 0.0174 35 1 6.1325 3.5515 -0.2111 36 1 5.3518 5.7684 1.4380 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239707699.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:49 Heat of formation + Delta-G solvation = -148.167167 kcal Electronic energy + Delta-G solvation = -25730.535406 eV Core-core repulsion = 21586.718309 eV Total energy + Delta-G solvation = -4143.817097 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.45558 -49.53987 -41.04400 -40.11298 -38.62692 -37.02610 -35.78387 -33.48719 -31.73737 -31.21693 -30.29223 -28.51577 -27.33371 -25.14321 -23.83415 -22.98195 -22.72216 -21.29859 -19.52581 -18.76718 -18.41218 -18.03537 -17.94634 -17.53593 -17.28169 -17.04635 -16.88194 -15.99604 -15.98321 -15.66587 -15.40044 -15.28797 -15.04306 -14.57280 -14.27698 -14.11655 -13.90762 -13.53138 -13.23587 -13.14560 -12.97278 -12.84253 -12.79499 -12.77031 -12.46986 -12.25657 -11.92095 -11.60593 -11.57834 -11.27015 -10.78733 -10.20186 -9.71798 -9.43524 -9.13689 -8.83835 -6.53262 -0.27781 -0.00766 0.42771 0.95908 1.28926 1.40722 1.46574 1.94837 2.11510 2.12214 2.47901 2.63792 2.83789 3.38911 3.51269 3.59357 3.91098 4.00780 4.25624 4.31981 4.38732 4.41582 4.44617 4.60835 4.71190 4.84362 4.88315 4.98307 5.04231 5.08719 5.14303 5.22670 5.27311 5.47233 5.58142 5.72522 5.82986 5.90534 5.97266 6.16574 6.50427 6.65669 6.76337 7.24161 8.10143 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.011998 B = 0.004899 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.118018 B = 5714.628512 C = 7417.377801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.371 6.371 3 C 0.503 3.497 4 O -0.550 6.550 5 C -0.285 4.285 6 C -0.026 4.026 7 C -0.225 4.225 8 C -0.027 4.027 9 C -0.052 4.052 10 C -0.088 4.088 11 C -0.080 4.080 12 C -0.119 4.119 13 C 0.048 3.952 14 F -0.142 7.142 15 C 0.038 3.962 16 F -0.148 7.148 17 C -0.149 4.149 18 C 0.119 3.881 19 C -0.441 4.441 20 H 0.087 0.913 21 C 0.032 3.968 22 N -0.801 5.801 23 Si 0.981 3.019 24 H -0.265 1.265 25 H -0.255 1.255 26 H -0.258 1.258 27 H 0.052 0.948 28 H 0.136 0.864 29 H 0.052 0.948 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.158 0.842 33 H 0.189 0.811 34 H 0.180 0.820 35 H 0.103 0.897 36 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.315 -8.458 2.137 12.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.289 6.289 3 C 0.355 3.645 4 O -0.444 6.444 5 C -0.288 4.288 6 C -0.044 4.044 7 C -0.244 4.244 8 C -0.028 4.028 9 C -0.053 4.053 10 C -0.106 4.106 11 C -0.097 4.097 12 C -0.138 4.138 13 C 0.028 3.972 14 F -0.120 7.120 15 C 0.018 3.982 16 F -0.127 7.127 17 C -0.169 4.169 18 C 0.116 3.884 19 C -0.468 4.468 20 H 0.105 0.895 21 C -0.186 4.186 22 N -0.425 5.425 23 Si 0.801 3.199 24 H -0.189 1.189 25 H -0.178 1.178 26 H -0.182 1.182 27 H 0.071 0.929 28 H 0.154 0.846 29 H 0.071 0.929 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.176 0.824 33 H 0.206 0.794 34 H 0.198 0.802 35 H 0.121 0.879 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.245 -7.976 2.209 11.683 hybrid contribution -1.035 1.505 -0.774 1.984 sum 7.210 -6.471 1.435 9.794 Atomic orbital electron populations 1.23395 0.75805 1.05169 1.01712 1.86539 1.24186 1.32723 1.85429 1.21284 0.89551 0.80813 0.72875 1.90707 1.67554 1.36594 1.49497 1.20096 0.87915 0.95477 1.25282 1.21040 0.93686 0.96350 0.93287 1.20566 0.93651 0.95939 1.14261 1.18696 0.90522 0.94135 0.99433 1.19120 0.93129 0.98071 0.95019 1.21562 0.94916 0.97483 0.96673 1.21505 0.92895 0.97104 0.98207 1.21518 1.02558 0.97017 0.92686 1.17905 0.87467 1.00189 0.91620 1.91473 1.80100 1.78311 1.62156 1.18241 0.89145 1.00450 0.90410 1.91469 1.80113 1.80084 1.61009 1.21229 0.93101 0.96476 1.06054 1.18714 0.91991 0.91227 0.86493 1.20236 1.05088 0.92574 1.28944 0.89461 1.26930 0.94828 1.04394 0.92475 1.69705 1.19692 1.31864 1.21249 0.85253 0.79112 0.75484 0.80017 1.18935 1.17840 1.18228 0.92912 0.84620 0.92905 0.84582 0.84381 0.82398 0.79364 0.80233 0.87928 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 10.57 113.37 1.20 2.16 16 2 O -0.37 -14.66 9.84 -57.44 -0.57 -15.23 16 3 C 0.50 24.62 7.86 70.16 0.55 25.17 16 4 O -0.55 -29.77 13.54 19.67 0.27 -29.51 16 5 C -0.28 -14.38 6.07 -18.47 -0.11 -14.50 16 6 C -0.03 -1.08 9.60 22.48 0.22 -0.86 16 7 C -0.23 -8.87 9.40 22.54 0.21 -8.66 16 8 C -0.03 -1.19 5.32 -20.12 -0.11 -1.30 16 9 C -0.05 -1.90 5.45 -20.01 -0.11 -2.01 16 10 C -0.09 -2.27 9.45 22.49 0.21 -2.05 16 11 C -0.08 -1.43 10.03 22.24 0.22 -1.21 16 12 C -0.12 -2.44 10.02 22.35 0.22 -2.22 16 13 C 0.05 1.47 7.30 22.38 0.16 1.63 16 14 F -0.14 -4.51 17.18 44.97 0.77 -3.74 16 15 C 0.04 1.42 7.15 22.64 0.16 1.58 16 16 F -0.15 -6.63 15.79 44.97 0.71 -5.92 16 17 C -0.15 -7.80 7.42 22.96 0.17 -7.63 16 18 C 0.12 6.64 5.67 -19.91 -0.11 6.52 16 19 C -0.44 -25.16 7.85 23.42 0.18 -24.98 16 20 H 0.09 5.17 5.95 -2.91 -0.02 5.15 16 21 C 0.03 1.65 5.26 85.37 0.45 2.10 16 22 N -0.80 -41.88 11.06 21.88 0.24 -41.64 16 23 Si 0.98 40.61 29.57 68.60 2.03 42.64 16 24 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 25 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 26 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 29 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.14 4.85 7.63 -2.91 -0.02 4.83 16 31 H 0.14 4.30 7.99 -2.91 -0.02 4.28 16 32 H 0.16 3.45 8.02 -2.91 -0.02 3.43 16 33 H 0.19 1.56 8.06 -2.91 -0.02 1.53 16 34 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.10 5.73 6.19 -2.91 -0.02 5.71 16 36 H 0.30 13.90 8.29 -92.70 -0.77 13.13 16 Total: -1.00 -70.66 327.31 8.12 -62.54 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 1.14 Total: 17.11 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 3.52 Total: -26.25 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.24 Total: -41.64 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -0.30 Total: -44.74 kcal Atomic # 9 Polarization: -11.14 SS G_CDS: 1.48 Total: -9.66 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -70.66 8.12 -62.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239707699.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.630 kcal (2) G-P(sol) polarization free energy of solvation -70.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds