Wall clock time and date at job start Tue Mar 31 2020 12:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39819 * 120.02677 * 213.86762 * 3 2 1 5 5 C 1.36546 * 120.14446 * 180.02562 * 4 3 2 6 6 C 1.39770 * 120.20640 * 359.97438 * 5 4 3 7 7 C 1.47871 * 119.97573 * 180.02562 * 6 5 4 8 8 N 1.31592 * 119.44891 * 316.26748 * 7 6 5 9 9 C 1.33596 * 121.75922 * 180.02562 * 8 7 6 10 10 C 1.40511 * 120.99148 * 179.97438 * 9 8 7 11 11 C 1.36242 * 119.70173 * 180.02562 * 10 9 8 12 12 C 1.39172 * 121.75888 * 0.02562 * 11 10 9 13 13 C 1.36122 * 121.47608 * 0.02562 * 12 11 10 14 14 C 1.40798 * 119.46965 * 359.68770 * 13 12 11 15 15 C 1.39982 * 121.40126 * 179.67608 * 14 13 12 16 16 C 1.40416 * 117.96018 * 180.34149 * 15 14 13 17 17 C 1.40812 * 120.41945 * 180.29604 * 16 15 14 18 18 H 1.08000 * 120.00329 * 151.88592 * 17 16 15 19 19 C 1.40117 * 119.99987 * 331.88558 * 17 16 15 20 20 N 1.30750 * 120.00009 * 346.42963 * 19 17 16 21 21 Si 1.86804 * 120.00066 * 166.42031 * 19 17 16 22 22 H 1.48494 * 109.46898 * 60.00362 * 21 19 17 23 23 H 1.48498 * 109.47135 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47003 * 300.00253 * 21 19 17 25 25 C 1.39631 * 120.04741 * 0.27706 * 6 5 4 26 26 C 1.37984 * 119.85267 * 359.48786 * 25 6 5 27 27 F 1.35106 * 120.09829 * 180.22994 * 26 25 6 28 28 H 1.07997 * 119.92853 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.89937 * 179.97438 * 5 4 3 30 30 H 1.07997 * 120.15345 * 0.04347 * 10 9 8 31 31 H 1.07994 * 119.11684 * 180.02562 * 11 10 9 32 32 H 1.08006 * 119.26144 * 180.02562 * 12 11 10 33 33 H 1.07997 * 120.26965 * 179.97438 * 13 12 11 34 34 H 1.08001 * 121.02181 * 0.61179 * 15 14 13 35 35 H 0.96999 * 120.00364 * 180.02562 * 20 19 17 36 36 H 1.07998 * 120.06857 * 179.74819 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2672 1.0061 0.6746 5 6 4.6327 1.0093 0.6757 6 6 5.3388 0.0079 0.0034 7 6 6.8175 0.0160 0.0084 8 7 7.4589 1.1485 -0.1857 9 6 8.7935 1.2088 -0.1909 10 6 9.4619 2.4269 -0.4004 11 6 10.8239 2.4581 -0.4009 12 6 11.5831 1.3093 -0.1990 13 6 10.9978 0.0980 0.0085 14 6 9.5932 0.0013 0.0265 15 6 8.9490 -1.2247 0.2297 16 6 7.5450 -1.2392 0.2266 17 6 6.8439 -2.4429 0.4322 18 1 5.8579 -2.4252 0.8725 19 6 7.4255 -3.6638 0.0655 20 7 8.4858 -3.6793 -0.6994 21 14 6.6862 -5.2694 0.6697 22 1 5.2855 -5.3809 0.1897 23 1 7.4817 -6.4087 0.1458 24 1 6.7043 -5.2949 2.1544 25 6 4.6490 -0.9973 -0.6774 26 6 3.2692 -1.0054 -0.6759 27 9 2.5967 -1.9783 -1.3291 28 1 2.7262 1.7823 1.1952 29 1 5.1687 1.7881 1.1977 30 1 8.8985 3.3344 -0.5599 31 1 11.3279 3.3995 -0.5624 32 1 12.6608 1.3804 -0.2071 33 1 11.6058 -0.7812 0.1627 34 1 9.5146 -2.1310 0.3884 35 1 8.8883 -4.5244 -0.9536 36 1 5.1942 -1.7689 -1.2004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240145374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:58 Heat of formation + Delta-G solvation = 46.983456 kcal Electronic energy + Delta-G solvation = -24482.164341 eV Core-core repulsion = 20809.871586 eV Total energy + Delta-G solvation = -3672.292755 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.78418 -39.52482 -38.64009 -36.58939 -35.83040 -34.40575 -31.89263 -31.83656 -30.54345 -29.47532 -28.69099 -25.91518 -24.58853 -22.70741 -21.91925 -21.59731 -20.67455 -18.95931 -18.27400 -17.21668 -16.69453 -16.12597 -16.03965 -15.53952 -15.22595 -14.90839 -14.24410 -13.95590 -13.65674 -13.59792 -13.52596 -13.31244 -13.11307 -12.97530 -12.70990 -12.55293 -12.15926 -11.98275 -11.79153 -11.62756 -11.43758 -11.26762 -11.08013 -10.95097 -10.75236 -10.59959 -10.12418 -9.72798 -9.17405 -8.86140 -8.61996 -8.48065 -7.56430 -7.32369 -7.17689 -4.76141 0.61132 1.43280 1.52164 1.88188 2.70554 2.80991 2.86403 2.88637 2.99658 3.30392 3.60274 3.67959 3.92546 3.98430 4.24439 4.48565 4.78882 4.98662 5.31169 5.37019 5.48153 5.52669 5.56146 5.62996 5.89623 5.98559 6.01936 6.10612 6.13573 6.24684 6.34348 6.47658 6.65193 6.69639 6.77340 6.86748 6.97039 7.08673 7.20643 7.24089 7.48673 7.53409 7.55212 7.73336 8.06486 8.25548 8.31387 8.97958 9.69419 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010655 B = 0.005192 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.339641 B = 5391.937110 C = 7716.148185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.266 3.734 3 C -0.087 4.087 4 C -0.048 4.048 5 C -0.114 4.114 6 C 0.070 3.930 7 C 0.087 3.913 8 N -0.444 5.444 9 C 0.026 3.974 10 C -0.057 4.057 11 C -0.176 4.176 12 C -0.115 4.115 13 C -0.129 4.129 14 C -0.043 4.043 15 C -0.163 4.163 16 C 0.082 3.918 17 C -0.428 4.428 18 H 0.093 0.907 19 C 0.073 3.927 20 N -0.768 5.768 21 Si 0.910 3.090 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.126 4.126 26 C 0.141 3.859 27 F -0.132 7.132 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.134 0.866 35 H 0.291 0.709 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.135 3.275 1.723 3.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.049 4.049 3 C -0.092 4.092 4 C -0.068 4.068 5 C -0.133 4.133 6 C 0.068 3.932 7 C -0.066 4.066 8 N -0.151 5.151 9 C -0.099 4.099 10 C -0.076 4.076 11 C -0.197 4.197 12 C -0.133 4.133 13 C -0.148 4.148 14 C -0.046 4.046 15 C -0.188 4.188 16 C 0.076 3.924 17 C -0.456 4.456 18 H 0.111 0.889 19 C -0.149 4.149 20 N -0.390 5.390 21 Si 0.733 3.267 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.183 1.183 25 C -0.146 4.146 26 C 0.119 3.881 27 F -0.111 7.111 28 H 0.155 0.845 29 H 0.157 0.843 30 H 0.133 0.867 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.151 0.849 35 H 0.102 0.898 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.852 3.893 1.412 4.536 hybrid contribution 0.715 -1.783 0.142 1.926 sum -1.137 2.109 1.553 2.856 Atomic orbital electron populations 1.81184 1.11964 1.08136 1.09141 1.25480 0.92437 0.93554 0.93410 1.15979 0.84508 1.00355 1.08347 1.20600 0.94061 0.95887 0.96260 1.21019 0.92892 0.99141 1.00244 1.18514 0.91694 0.91550 0.91468 1.20796 0.90580 0.89982 1.05212 1.67296 1.09154 1.27545 1.11078 1.19241 0.88089 0.92820 1.09725 1.20520 0.93732 0.95736 0.97575 1.20303 0.93718 0.97773 1.07875 1.20520 0.98697 0.93069 1.00996 1.20886 0.93726 0.97150 1.03004 1.19718 0.93366 0.94028 0.97456 1.21546 0.93738 0.95508 1.08050 1.19136 0.92367 0.91247 0.89610 1.19690 1.03150 0.89825 1.32922 0.88928 1.26040 0.94334 1.01813 0.92761 1.69721 1.16695 1.30260 1.22310 0.86266 0.80444 0.79262 0.80693 1.18155 1.19829 1.18264 1.21466 0.90690 1.01090 1.01333 1.17482 0.89882 0.86287 0.94427 1.91519 1.80379 1.60519 1.78670 0.84517 0.84292 0.86727 0.87545 0.87707 0.86948 0.84856 0.89768 0.82141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.05 18.54 41.84 0.78 -6.28 16 2 C 0.27 3.99 14.96 -22.47 -0.34 3.65 16 3 C -0.09 -1.23 5.75 -106.71 -0.61 -1.85 16 4 C -0.05 -0.60 9.68 -39.60 -0.38 -0.98 16 5 C -0.11 -1.65 9.56 -39.62 -0.38 -2.03 16 6 C 0.07 1.22 5.27 -104.86 -0.55 0.67 16 7 C 0.09 1.82 6.54 -80.61 -0.53 1.29 16 8 N -0.44 -9.41 10.05 -4.83 -0.05 -9.46 16 9 C 0.03 0.54 6.75 -82.94 -0.56 -0.02 16 10 C -0.06 -1.05 9.99 -39.44 -0.39 -1.44 16 11 C -0.18 -2.92 9.90 -39.95 -0.40 -3.31 16 12 C -0.11 -1.92 9.91 -40.00 -0.40 -2.32 16 13 C -0.13 -2.43 9.80 -39.38 -0.39 -2.82 16 14 C -0.04 -0.94 5.87 -104.97 -0.62 -1.55 16 15 C -0.16 -3.70 8.52 -38.11 -0.32 -4.03 16 16 C 0.08 1.82 5.66 -104.68 -0.59 1.23 16 17 C -0.43 -9.16 6.77 -37.90 -0.26 -9.41 16 18 H 0.09 1.87 6.50 -52.49 -0.34 1.53 16 19 C 0.07 1.51 5.22 -17.31 -0.09 1.42 16 20 N -0.77 -16.72 10.97 55.56 0.61 -16.11 16 21 Si 0.91 15.98 29.58 -169.99 -5.03 10.95 16 22 H -0.26 -4.53 7.11 56.52 0.40 -4.13 16 23 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 24 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 25 C -0.13 -2.13 7.81 -39.15 -0.31 -2.44 16 26 C 0.14 2.20 7.27 -39.01 -0.28 1.92 16 27 F -0.13 -2.16 16.81 2.25 0.04 -2.12 16 28 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 29 H 0.14 1.91 8.06 -52.49 -0.42 1.48 16 30 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.10 1.44 8.06 -52.48 -0.42 1.01 16 33 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 34 H 0.13 3.09 6.35 -52.49 -0.33 2.76 16 35 H 0.29 5.79 8.29 -40.82 -0.34 5.45 16 36 H 0.16 2.90 6.76 -52.49 -0.35 2.55 16 LS Contribution 328.73 15.07 4.95 4.95 Total: -1.00 -24.23 328.73 -8.79 -33.02 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -2.70 Total: 7.05 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -7.39 Total: -22.00 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 1.34 Total: -31.85 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 15.98 SS G_CDS: -5.03 Total: 10.95 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -24.23 -8.79 -33.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240145374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.005 kcal (2) G-P(sol) polarization free energy of solvation -24.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds