Wall clock time and date at job start Tue Mar 31 2020 12:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39819 * 120.02677 * 213.86762 * 3 2 1 5 5 C 1.36546 * 120.14446 * 180.02562 * 4 3 2 6 6 C 1.39770 * 120.20640 * 359.97438 * 5 4 3 7 7 C 1.47871 * 119.97573 * 180.02562 * 6 5 4 8 8 N 1.31592 * 119.44891 * 316.26748 * 7 6 5 9 9 C 1.33596 * 121.75922 * 180.02562 * 8 7 6 10 10 C 1.40511 * 120.99148 * 179.97438 * 9 8 7 11 11 C 1.36242 * 119.70173 * 180.02562 * 10 9 8 12 12 C 1.39172 * 121.75888 * 0.02562 * 11 10 9 13 13 C 1.36122 * 121.47608 * 0.02562 * 12 11 10 14 14 C 1.40798 * 119.46965 * 359.68770 * 13 12 11 15 15 C 1.39982 * 121.40126 * 179.67608 * 14 13 12 16 16 C 1.40416 * 117.96018 * 180.34149 * 15 14 13 17 17 C 1.40812 * 120.41945 * 180.29604 * 16 15 14 18 18 H 1.08000 * 120.00329 * 151.88592 * 17 16 15 19 19 C 1.40117 * 119.99987 * 331.88558 * 17 16 15 20 20 N 1.30750 * 120.00009 * 346.42963 * 19 17 16 21 21 Si 1.86804 * 120.00066 * 166.42031 * 19 17 16 22 22 H 1.48494 * 109.46898 * 60.00362 * 21 19 17 23 23 H 1.48498 * 109.47135 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47003 * 300.00253 * 21 19 17 25 25 C 1.39631 * 120.04741 * 0.27706 * 6 5 4 26 26 C 1.37984 * 119.85267 * 359.48786 * 25 6 5 27 27 F 1.35106 * 120.09829 * 180.22994 * 26 25 6 28 28 H 1.07997 * 119.92853 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.89937 * 179.97438 * 5 4 3 30 30 H 1.07997 * 120.15345 * 0.04347 * 10 9 8 31 31 H 1.07994 * 119.11684 * 180.02562 * 11 10 9 32 32 H 1.08006 * 119.26144 * 180.02562 * 12 11 10 33 33 H 1.07997 * 120.26965 * 179.97438 * 13 12 11 34 34 H 1.08001 * 121.02181 * 0.61179 * 15 14 13 35 35 H 0.96999 * 120.00364 * 180.02562 * 20 19 17 36 36 H 1.07998 * 120.06857 * 179.74819 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2672 1.0061 0.6746 5 6 4.6327 1.0093 0.6757 6 6 5.3388 0.0079 0.0034 7 6 6.8175 0.0160 0.0084 8 7 7.4589 1.1485 -0.1857 9 6 8.7935 1.2088 -0.1909 10 6 9.4619 2.4269 -0.4004 11 6 10.8239 2.4581 -0.4009 12 6 11.5831 1.3093 -0.1990 13 6 10.9978 0.0980 0.0085 14 6 9.5932 0.0013 0.0265 15 6 8.9490 -1.2247 0.2297 16 6 7.5450 -1.2392 0.2266 17 6 6.8439 -2.4429 0.4322 18 1 5.8579 -2.4252 0.8725 19 6 7.4255 -3.6638 0.0655 20 7 8.4858 -3.6793 -0.6994 21 14 6.6862 -5.2694 0.6697 22 1 5.2855 -5.3809 0.1897 23 1 7.4817 -6.4087 0.1458 24 1 6.7043 -5.2949 2.1544 25 6 4.6490 -0.9973 -0.6774 26 6 3.2692 -1.0054 -0.6759 27 9 2.5967 -1.9783 -1.3291 28 1 2.7262 1.7823 1.1952 29 1 5.1687 1.7881 1.1977 30 1 8.8985 3.3344 -0.5599 31 1 11.3279 3.3995 -0.5624 32 1 12.6608 1.3804 -0.2071 33 1 11.6058 -0.7812 0.1627 34 1 9.5146 -2.1310 0.3884 35 1 8.8883 -4.5244 -0.9536 36 1 5.1942 -1.7689 -1.2004 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240145374.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:57 Heat of formation + Delta-G solvation = 38.479782 kcal Electronic energy + Delta-G solvation = -24482.533088 eV Core-core repulsion = 20809.871586 eV Total energy + Delta-G solvation = -3672.661502 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.06802 -40.95063 -39.97885 -37.93001 -37.20653 -35.96391 -33.42933 -33.16622 -31.79167 -30.97193 -30.11338 -27.46478 -25.95619 -24.03792 -23.34904 -22.99447 -22.20088 -20.19631 -19.77240 -18.61900 -18.12639 -17.59266 -17.34507 -16.82184 -16.64506 -16.34271 -15.54777 -15.19912 -15.08637 -14.94760 -14.82583 -14.69654 -14.53677 -14.36363 -14.09505 -13.86826 -13.65153 -13.48060 -13.11897 -12.94083 -12.86954 -12.71574 -12.38549 -12.32245 -12.16474 -12.00722 -11.62932 -11.27040 -10.73147 -10.23680 -9.99175 -9.84727 -9.10792 -8.82059 -8.72307 -6.39061 -0.68398 0.04230 0.24848 0.37713 1.37349 1.40660 1.48759 1.49126 1.62940 1.85356 2.13647 2.24307 2.68667 2.72658 2.93827 3.00655 3.42861 3.69694 3.86419 4.03085 4.16553 4.18123 4.27549 4.31593 4.59081 4.62299 4.66425 4.69659 4.80404 4.96893 5.01766 5.11625 5.15038 5.26685 5.37979 5.52101 5.59398 5.68786 5.75696 5.80953 5.91489 5.97292 6.25056 6.32346 6.47269 6.66017 6.71652 7.37823 8.16039 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010655 B = 0.005192 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.339641 B = 5391.937110 C = 7716.148185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.282 3.718 3 C -0.074 4.074 4 C -0.021 4.021 5 C -0.105 4.105 6 C 0.049 3.951 7 C 0.084 3.916 8 N -0.451 5.451 9 C 0.000 4.000 10 C -0.071 4.071 11 C -0.163 4.163 12 C -0.102 4.102 13 C -0.153 4.153 14 C -0.064 4.064 15 C -0.194 4.194 16 C 0.057 3.943 17 C -0.444 4.444 18 H 0.097 0.903 19 C 0.041 3.959 20 N -0.801 5.801 21 Si 0.969 3.031 22 H -0.256 1.256 23 H -0.269 1.269 24 H -0.257 1.257 25 C -0.131 4.131 26 C 0.138 3.862 27 F -0.138 7.138 28 H 0.180 0.820 29 H 0.151 0.849 30 H 0.134 0.866 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.295 0.705 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.213 5.324 2.340 5.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.032 4.032 3 C -0.079 4.079 4 C -0.041 4.041 5 C -0.124 4.124 6 C 0.047 3.953 7 C -0.070 4.070 8 N -0.158 5.158 9 C -0.124 4.124 10 C -0.089 4.089 11 C -0.183 4.183 12 C -0.119 4.119 13 C -0.172 4.172 14 C -0.066 4.066 15 C -0.220 4.220 16 C 0.052 3.948 17 C -0.472 4.472 18 H 0.115 0.885 19 C -0.178 4.178 20 N -0.425 5.425 21 Si 0.790 3.210 22 H -0.180 1.180 23 H -0.193 1.193 24 H -0.181 1.181 25 C -0.151 4.151 26 C 0.116 3.884 27 F -0.117 7.117 28 H 0.198 0.802 29 H 0.169 0.831 30 H 0.152 0.848 31 H 0.166 0.834 32 H 0.161 0.839 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.106 0.894 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.185 5.959 2.025 6.662 hybrid contribution 0.886 -2.236 -0.084 2.407 sum -1.300 3.722 1.941 4.395 Atomic orbital electron populations 1.81216 1.12610 1.08827 1.09811 1.25393 0.92237 0.92873 0.92738 1.16007 0.84128 1.00053 1.07727 1.20944 0.93094 0.95584 0.94453 1.21122 0.93666 0.98192 0.99377 1.18498 0.90221 0.93202 0.93397 1.21189 0.92283 0.89408 1.04145 1.67372 1.09316 1.27527 1.11583 1.19772 0.88476 0.93879 1.10235 1.20825 0.94848 0.95288 0.97951 1.20809 0.93112 0.99339 1.05051 1.20986 1.00795 0.92006 0.98152 1.21078 0.92787 0.98804 1.04511 1.20021 0.94911 0.93929 0.97762 1.21487 0.94270 0.95633 1.10578 1.19453 0.92643 0.92490 0.90221 1.19824 1.03452 0.90173 1.33738 0.88521 1.26720 0.94446 1.04216 0.92416 1.69788 1.18055 1.31020 1.23604 0.85399 0.79630 0.75986 0.80032 1.17993 1.19343 1.18132 1.21206 0.91231 1.00777 1.01905 1.17446 0.89360 0.86692 0.94866 1.91505 1.80310 1.60935 1.78913 0.80243 0.83129 0.84794 0.83423 0.83858 0.86378 0.86570 0.89435 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -13.81 18.54 19.00 0.35 -13.46 16 2 C 0.28 7.76 14.96 88.33 1.32 9.09 16 3 C -0.07 -1.93 5.75 -21.22 -0.12 -2.05 16 4 C -0.02 -0.45 9.68 22.26 0.22 -0.23 16 5 C -0.10 -2.83 9.56 22.24 0.21 -2.62 16 6 C 0.05 1.72 5.27 -20.02 -0.11 1.61 16 7 C 0.08 3.61 6.54 43.95 0.29 3.90 16 8 N -0.45 -19.40 10.05 -169.20 -1.70 -21.10 16 9 C 0.00 -0.01 6.75 41.57 0.28 0.27 16 10 C -0.07 -2.47 9.99 22.36 0.22 -2.25 16 11 C -0.16 -4.86 9.90 22.03 0.22 -4.64 16 12 C -0.10 -3.14 9.91 22.00 0.22 -2.92 16 13 C -0.15 -5.80 9.80 22.40 0.22 -5.58 16 14 C -0.06 -2.87 5.87 -20.09 -0.12 -2.99 16 15 C -0.19 -9.41 8.52 23.22 0.20 -9.21 16 16 C 0.06 2.69 5.66 -19.91 -0.11 2.58 16 17 C -0.44 -20.04 6.77 23.36 0.16 -19.88 16 18 H 0.10 4.11 6.50 -2.91 -0.02 4.09 16 19 C 0.04 1.78 5.22 85.31 0.44 2.23 16 20 N -0.80 -37.05 10.97 21.86 0.24 -36.81 16 21 Si 0.97 33.72 29.58 68.60 2.03 35.75 16 22 H -0.26 -8.75 7.11 99.48 0.71 -8.05 16 23 H -0.27 -9.05 7.11 99.48 0.71 -8.35 16 24 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 25 C -0.13 -4.54 7.81 22.55 0.18 -4.36 16 26 C 0.14 4.23 7.27 22.64 0.16 4.39 16 27 F -0.14 -4.46 16.81 44.97 0.76 -3.70 16 28 H 0.18 2.46 8.06 -2.91 -0.02 2.43 16 29 H 0.15 3.78 8.06 -2.91 -0.02 3.76 16 30 H 0.13 4.08 8.06 -2.91 -0.02 4.05 16 31 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 32 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 33 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 34 H 0.12 5.86 6.35 -2.91 -0.02 5.84 16 35 H 0.29 12.41 8.29 -92.71 -0.77 11.64 16 36 H 0.14 5.39 6.76 -2.91 -0.02 5.37 16 Total: -1.00 -55.37 328.73 6.71 -48.66 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 1.15 Total: 23.33 kcal Atomic # 6 Polarization: -36.56 SS G_CDS: 3.88 Total: -32.68 kcal Atomic # 7 Polarization: -70.26 SS G_CDS: -1.11 Total: -71.37 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.76 Total: -3.70 kcal Atomic # 14 Polarization: 33.72 SS G_CDS: 2.03 Total: 35.75 kcal Total: -55.37 6.71 -48.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240145374.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.136 kcal (2) G-P(sol) polarization free energy of solvation -55.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds