Wall clock time and date at job start Tue Mar 31 2020 12:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21271 * 120.00056 * 2 1 4 4 C 1.47046 * 120.00169 * 180.02562 * 2 1 3 5 5 C 1.40020 * 120.08017 * 359.97228 * 4 2 1 6 6 C 1.37820 * 120.10510 * 179.97438 * 5 4 2 7 7 C 1.38503 * 120.28510 * 359.76843 * 6 5 4 8 8 F 1.35100 * 119.91956 * 180.27384 * 7 6 5 9 9 C 1.39808 * 120.16637 * 0.51278 * 7 6 5 10 10 C 1.48290 * 120.05502 * 179.74054 * 9 7 6 11 11 C 1.39300 * 120.13119 * 244.72545 * 10 9 7 12 12 C 1.37974 * 119.96764 * 180.27587 * 11 10 9 13 13 C 1.38685 * 120.24427 * 359.47334 * 12 11 10 14 14 F 1.35095 * 119.86334 * 180.25647 * 13 12 11 15 15 C 1.38333 * 120.26680 * 0.55065 * 13 12 11 16 16 C 1.38706 * 120.03034 * 359.70317 * 15 13 12 17 17 O 1.35671 * 120.12259 * 180.02562 * 16 15 13 18 18 C 1.34806 * 117.00028 * 354.40352 * 17 16 15 19 19 H 1.08002 * 120.00081 * 5.06222 * 18 17 16 20 20 C 1.38646 * 119.99990 * 185.06852 * 18 17 16 21 21 N 1.31560 * 120.00045 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99909 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47223 * 59.99609 * 22 20 18 24 24 H 1.48504 * 109.46803 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46765 * 299.99102 * 22 20 18 26 26 C 1.38971 * 119.89076 * 359.46762 * 9 7 6 27 27 H 1.09002 * 109.47173 * 239.99541 * 1 2 3 28 28 H 1.09001 * 109.47142 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47557 * 119.99708 * 1 2 3 30 30 H 1.07995 * 119.94792 * 0.02899 * 5 4 2 31 31 H 1.08002 * 119.85690 * 180.02562 * 6 5 4 32 32 H 1.07992 * 120.01323 * 359.97438 * 11 10 9 33 33 H 1.07996 * 119.87835 * 179.74546 * 12 11 10 34 34 H 1.07998 * 119.98505 * 179.72778 * 15 13 12 35 35 H 0.97002 * 119.99770 * 179.97438 * 21 20 18 36 36 H 1.07996 * 120.14224 * 180.25755 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2422 -1.2734 -0.0006 5 6 1.5438 -2.4870 -0.0005 6 6 2.2325 -3.6809 -0.0016 7 6 3.6175 -3.6883 -0.0075 8 9 4.2850 -4.8629 -0.0142 9 6 4.3265 -2.4834 -0.0017 10 6 5.8094 -2.4943 -0.0023 11 6 6.5128 -1.9906 1.0895 12 6 7.8925 -1.9972 1.0829 13 6 8.5835 -2.5139 -0.0029 14 9 9.9344 -2.5212 0.0011 15 6 7.8950 -3.0162 -1.0925 16 6 6.5079 -3.0104 -1.1001 17 8 5.8308 -3.5030 -2.1675 18 6 6.5619 -3.8767 -3.2367 19 1 7.6406 -3.8545 -3.1877 20 6 5.9291 -4.2895 -4.3992 21 7 4.6152 -4.3169 -4.4588 22 14 6.9423 -4.8080 -5.8805 23 1 7.8035 -5.9603 -5.5123 24 1 6.0344 -5.2029 -6.9874 25 1 7.7941 -3.6734 -6.3192 26 6 3.6394 -1.2755 -0.0011 27 1 -0.3634 -0.5139 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5137 -0.8899 30 1 0.4639 -2.4876 -0.0005 31 1 1.6897 -4.6146 -0.0020 32 1 5.9785 -1.5907 1.9385 33 1 8.4364 -1.6026 1.9284 34 1 8.4377 -3.4135 -1.9375 35 1 4.1725 -4.6053 -5.2723 36 1 4.1831 -0.3423 -0.0008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241300181.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:59 Heat of formation + Delta-G solvation = -106.720053 kcal Electronic energy + Delta-G solvation = -25843.732951 eV Core-core repulsion = 21701.713135 eV Total energy + Delta-G solvation = -4142.019816 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.39568 -48.37085 -39.86663 -39.14575 -37.68240 -36.38044 -32.59392 -32.35280 -31.07525 -29.70115 -29.39530 -27.86395 -25.55010 -23.50191 -23.10212 -21.84946 -21.33454 -19.48945 -18.36944 -17.67953 -17.24070 -16.41272 -16.25620 -15.62784 -15.33191 -15.09871 -15.06228 -14.97910 -14.79336 -14.56460 -14.32390 -13.81024 -13.64063 -13.41513 -13.30681 -12.88630 -12.68481 -12.58060 -12.38710 -12.29211 -11.86826 -11.75768 -11.53880 -11.27637 -10.86649 -10.83371 -10.68582 -10.56018 -9.77685 -9.66489 -8.99150 -8.86893 -8.47445 -8.07941 -7.42677 -6.61171 -4.20093 0.76286 1.36284 1.81780 2.07716 2.48540 3.06208 3.07337 3.09742 3.83222 3.83981 4.07560 4.23589 4.56363 4.76816 4.81966 4.92477 5.00942 5.04147 5.11150 5.23296 5.30254 5.32720 5.47926 5.56253 5.66442 5.78696 6.00097 6.01783 6.14928 6.23539 6.34516 6.37548 6.51607 6.66478 6.76404 6.83806 6.94450 7.08263 7.19057 7.54075 7.58272 7.81155 8.82872 9.45494 10.54739 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009888 B = 0.005374 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.995369 B = 5209.202886 C = 6841.637498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.399 3.601 3 O -0.463 6.463 4 C -0.196 4.196 5 C -0.050 4.050 6 C -0.169 4.169 7 C 0.164 3.836 8 F -0.121 7.121 9 C -0.054 4.054 10 C -0.154 4.154 11 C -0.026 4.026 12 C -0.250 4.250 13 C 0.150 3.850 14 F -0.150 7.150 15 C -0.270 4.270 16 C 0.192 3.808 17 O -0.151 6.151 18 C -0.397 4.397 19 H 0.094 0.906 20 C 0.046 3.954 21 N -0.850 5.850 22 Si 0.942 3.058 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.268 1.268 26 C -0.021 4.021 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.142 0.858 35 H 0.273 0.727 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.528 2.798 8.699 11.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.278 3.722 3 O -0.340 6.340 4 C -0.197 4.197 5 C -0.068 4.068 6 C -0.188 4.188 7 C 0.145 3.855 8 F -0.099 7.099 9 C -0.055 4.055 10 C -0.155 4.155 11 C -0.044 4.044 12 C -0.270 4.270 13 C 0.131 3.869 14 F -0.128 7.128 15 C -0.290 4.290 16 C 0.135 3.865 17 O -0.052 6.052 18 C -0.473 4.473 19 H 0.112 0.888 20 C -0.160 4.160 21 N -0.482 5.482 22 Si 0.766 3.234 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.193 1.193 26 C -0.039 4.039 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.113 0.887 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.160 0.840 35 H 0.083 0.917 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.589 3.181 8.441 11.171 hybrid contribution 0.964 -0.731 -0.919 1.519 sum -5.625 2.450 7.522 9.707 Atomic orbital electron populations 1.22241 0.93964 1.04890 1.04528 1.22381 0.91495 0.87541 0.70742 1.90535 1.72222 1.34313 1.36915 1.20328 0.94281 0.94730 1.10346 1.21125 0.99756 0.90538 0.95419 1.20959 0.92137 0.99730 1.05992 1.18096 0.89824 0.81182 0.96424 1.91541 1.80853 1.44961 1.92589 1.18495 0.92847 0.91429 1.02708 1.17583 0.90251 1.11728 0.95988 1.20495 0.92727 0.95429 0.95732 1.20440 0.94387 1.12373 0.99786 1.17533 0.75839 0.98350 0.95204 1.91422 1.30048 1.94486 1.96881 1.20977 0.94511 1.12661 1.00896 1.18931 0.89335 0.89875 0.88375 1.83974 1.34603 1.66307 1.20293 1.21356 0.91291 1.45433 0.89185 0.88822 1.25315 0.96190 0.96344 0.98187 1.70029 1.07644 1.42087 1.28490 0.85758 0.78913 0.79416 0.79316 1.19277 1.20084 1.19274 1.21348 0.92576 0.97434 0.92575 0.88919 0.89924 0.88748 0.84607 0.84382 0.85675 0.85942 0.84041 0.91678 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 8.92 36.00 0.32 -1.39 16 2 C 0.40 5.37 7.22 -30.74 -0.22 5.15 16 3 O -0.46 -7.80 17.07 5.56 0.09 -7.70 16 4 C -0.20 -2.88 5.87 -105.11 -0.62 -3.50 16 5 C -0.05 -0.64 9.46 -39.07 -0.37 -1.01 16 6 C -0.17 -2.56 9.99 -39.64 -0.40 -2.95 16 7 C 0.16 3.12 6.96 -38.90 -0.27 2.85 16 8 F -0.12 -2.57 16.60 2.25 0.04 -2.53 16 9 C -0.05 -1.04 4.95 -104.90 -0.52 -1.56 16 10 C -0.15 -3.16 5.01 -104.72 -0.53 -3.68 16 11 C -0.03 -0.45 9.72 -39.28 -0.38 -0.83 16 12 C -0.25 -4.37 10.01 -39.51 -0.40 -4.77 16 13 C 0.15 2.95 7.29 -39.38 -0.29 2.66 16 14 F -0.15 -2.81 17.26 2.25 0.04 -2.77 16 15 C -0.27 -5.94 9.14 -39.37 -0.36 -6.30 16 16 C 0.19 4.52 6.43 -38.76 -0.25 4.27 16 17 O -0.15 -4.10 8.90 0.36 0.00 -4.09 16 18 C -0.40 -10.71 9.49 30.88 0.29 -10.42 16 19 H 0.09 2.36 5.21 -52.49 -0.27 2.08 16 20 C 0.05 1.22 5.49 -17.52 -0.10 1.12 16 21 N -0.85 -23.78 13.67 55.48 0.76 -23.02 16 22 Si 0.94 19.95 29.55 -169.99 -5.02 14.93 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 C -0.02 -0.36 9.27 -38.76 -0.36 -0.72 16 27 H 0.09 0.58 8.08 -51.93 -0.42 0.16 16 28 H 0.08 0.68 8.12 -51.93 -0.42 0.26 16 29 H 0.09 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.14 1.17 7.03 -52.49 -0.37 0.80 16 31 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 32 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 33 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.14 3.12 5.64 -52.49 -0.30 2.82 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.14 2.38 7.64 -52.49 -0.40 1.98 16 LS Contribution 331.88 15.07 5.00 5.00 Total: -1.00 -31.18 331.88 -6.53 -37.71 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -3.00 Total: 3.58 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -4.43 Total: -21.09 kcal Atomic # 7 Polarization: -23.78 SS G_CDS: 0.76 Total: -23.02 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.10 Total: -11.80 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.08 Total: -5.31 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.18 -6.53 -37.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241300181.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.010 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds