Wall clock time and date at job start Tue Mar 31 2020 12:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21271 * 120.00056 * 2 1 4 4 C 1.47046 * 120.00169 * 180.02562 * 2 1 3 5 5 C 1.40020 * 120.08017 * 359.97228 * 4 2 1 6 6 C 1.37820 * 120.10510 * 179.97438 * 5 4 2 7 7 C 1.38503 * 120.28510 * 359.76843 * 6 5 4 8 8 F 1.35100 * 119.91956 * 180.27384 * 7 6 5 9 9 C 1.39808 * 120.16637 * 0.51278 * 7 6 5 10 10 C 1.48290 * 120.05502 * 179.74054 * 9 7 6 11 11 C 1.39300 * 120.13119 * 244.72545 * 10 9 7 12 12 C 1.37974 * 119.96764 * 180.27587 * 11 10 9 13 13 C 1.38685 * 120.24427 * 359.47334 * 12 11 10 14 14 F 1.35095 * 119.86334 * 180.25647 * 13 12 11 15 15 C 1.38333 * 120.26680 * 0.55065 * 13 12 11 16 16 C 1.38706 * 120.03034 * 359.70317 * 15 13 12 17 17 O 1.35671 * 120.12259 * 180.02562 * 16 15 13 18 18 C 1.34806 * 117.00028 * 354.40352 * 17 16 15 19 19 H 1.08002 * 120.00081 * 5.06222 * 18 17 16 20 20 C 1.38646 * 119.99990 * 185.06852 * 18 17 16 21 21 N 1.31560 * 120.00045 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99909 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47223 * 59.99609 * 22 20 18 24 24 H 1.48504 * 109.46803 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46765 * 299.99102 * 22 20 18 26 26 C 1.38971 * 119.89076 * 359.46762 * 9 7 6 27 27 H 1.09002 * 109.47173 * 239.99541 * 1 2 3 28 28 H 1.09001 * 109.47142 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.47557 * 119.99708 * 1 2 3 30 30 H 1.07995 * 119.94792 * 0.02899 * 5 4 2 31 31 H 1.08002 * 119.85690 * 180.02562 * 6 5 4 32 32 H 1.07992 * 120.01323 * 359.97438 * 11 10 9 33 33 H 1.07996 * 119.87835 * 179.74546 * 12 11 10 34 34 H 1.07998 * 119.98505 * 179.72778 * 15 13 12 35 35 H 0.97002 * 119.99770 * 179.97438 * 21 20 18 36 36 H 1.07996 * 120.14224 * 180.25755 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2422 -1.2734 -0.0006 5 6 1.5438 -2.4870 -0.0005 6 6 2.2325 -3.6809 -0.0016 7 6 3.6175 -3.6883 -0.0075 8 9 4.2850 -4.8629 -0.0142 9 6 4.3265 -2.4834 -0.0017 10 6 5.8094 -2.4943 -0.0023 11 6 6.5128 -1.9906 1.0895 12 6 7.8925 -1.9972 1.0829 13 6 8.5835 -2.5139 -0.0029 14 9 9.9344 -2.5212 0.0011 15 6 7.8950 -3.0162 -1.0925 16 6 6.5079 -3.0104 -1.1001 17 8 5.8308 -3.5030 -2.1675 18 6 6.5619 -3.8767 -3.2367 19 1 7.6406 -3.8545 -3.1877 20 6 5.9291 -4.2895 -4.3992 21 7 4.6152 -4.3169 -4.4588 22 14 6.9423 -4.8080 -5.8805 23 1 7.8035 -5.9603 -5.5123 24 1 6.0344 -5.2029 -6.9874 25 1 7.7941 -3.6734 -6.3192 26 6 3.6394 -1.2755 -0.0011 27 1 -0.3634 -0.5139 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5137 -0.8899 30 1 0.4639 -2.4876 -0.0005 31 1 1.6897 -4.6146 -0.0020 32 1 5.9785 -1.5907 1.9385 33 1 8.4364 -1.6026 1.9284 34 1 8.4377 -3.4135 -1.9375 35 1 4.1725 -4.6053 -5.2723 36 1 4.1831 -0.3423 -0.0008 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241300181.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:59 Heat of formation + Delta-G solvation = -123.963279 kcal Electronic energy + Delta-G solvation = -25844.480673 eV Core-core repulsion = 21701.713135 eV Total energy + Delta-G solvation = -4142.767538 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.93988 -49.89543 -41.21657 -40.63060 -39.00259 -38.01391 -34.39687 -33.80315 -32.24099 -31.14437 -30.69113 -29.20530 -27.45071 -24.77449 -24.45107 -23.48400 -22.74486 -20.72830 -20.15903 -19.29849 -18.65882 -17.66893 -17.60244 -17.23732 -17.02219 -16.64787 -16.48869 -16.40192 -16.01624 -15.89533 -15.69577 -15.44599 -15.23917 -15.02824 -14.77684 -14.19421 -14.12096 -13.91481 -13.64837 -13.36948 -13.16056 -12.97890 -12.87609 -12.85606 -12.44790 -12.39543 -12.19103 -12.03491 -11.56421 -10.86968 -10.81509 -10.18838 -9.85253 -9.61887 -9.08225 -8.54364 -6.22518 -0.46570 -0.02822 0.35152 0.46790 1.31649 1.34242 1.41222 1.46463 2.10962 2.51400 2.64977 2.98327 3.10434 3.15826 3.29642 3.37701 3.58249 3.76874 3.91929 4.05351 4.13344 4.18649 4.28250 4.38207 4.58242 4.73806 4.76904 4.82588 4.87184 4.96262 5.03554 5.10971 5.16344 5.17788 5.19197 5.29346 5.38725 5.45857 5.80414 5.90122 5.95621 6.55525 6.88555 7.60635 8.65988 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009888 B = 0.005374 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.995369 B = 5209.202886 C = 6841.637498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.401 3.599 3 O -0.506 6.506 4 C -0.198 4.198 5 C -0.025 4.025 6 C -0.167 4.167 7 C 0.127 3.873 8 F -0.146 7.146 9 C -0.081 4.081 10 C -0.156 4.156 11 C -0.021 4.021 12 C -0.221 4.221 13 C 0.142 3.858 14 F -0.143 7.143 15 C -0.287 4.287 16 C 0.161 3.839 17 O -0.193 6.193 18 C -0.424 4.424 19 H 0.097 0.903 20 C -0.008 4.008 21 N -0.901 5.901 22 Si 1.012 2.988 23 H -0.260 1.260 24 H -0.266 1.266 25 H -0.260 1.260 26 C -0.037 4.037 27 H 0.127 0.873 28 H 0.087 0.913 29 H 0.116 0.884 30 H 0.193 0.807 31 H 0.165 0.835 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.130 0.870 35 H 0.275 0.725 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.162 3.606 10.312 13.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.282 3.718 3 O -0.385 6.385 4 C -0.199 4.199 5 C -0.042 4.042 6 C -0.186 4.186 7 C 0.107 3.893 8 F -0.125 7.125 9 C -0.082 4.082 10 C -0.157 4.157 11 C -0.039 4.039 12 C -0.240 4.240 13 C 0.123 3.877 14 F -0.122 7.122 15 C -0.307 4.307 16 C 0.108 3.892 17 O -0.097 6.097 18 C -0.500 4.500 19 H 0.114 0.886 20 C -0.208 4.208 21 N -0.537 5.537 22 Si 0.831 3.169 23 H -0.184 1.184 24 H -0.191 1.191 25 H -0.185 1.185 26 C -0.055 4.055 27 H 0.145 0.855 28 H 0.106 0.894 29 H 0.134 0.866 30 H 0.210 0.790 31 H 0.182 0.818 32 H 0.182 0.818 33 H 0.182 0.818 34 H 0.147 0.853 35 H 0.085 0.915 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.200 4.001 10.106 13.615 hybrid contribution 1.485 -0.823 -1.107 2.026 sum -6.715 3.178 8.999 11.669 Atomic orbital electron populations 1.22300 0.89242 1.06244 1.07026 1.23055 0.93793 0.85980 0.68936 1.90532 1.73564 1.35429 1.38974 1.20746 0.93425 0.96718 1.09019 1.21693 1.02226 0.88474 0.91854 1.21380 0.90555 1.01990 1.04655 1.18592 0.91564 0.80364 0.98755 1.91470 1.81646 1.46166 1.93176 1.18564 0.92299 0.92440 1.04855 1.18085 0.91738 1.10273 0.95615 1.20993 0.92968 0.94151 0.95775 1.20958 0.94466 1.09059 0.99550 1.17617 0.76200 0.98675 0.95255 1.91436 1.29470 1.94449 1.96845 1.21034 0.94356 1.13562 1.01760 1.19475 0.90250 0.90804 0.88707 1.83961 1.35359 1.69124 1.21290 1.21750 0.91754 1.46356 0.90105 0.88580 1.26450 0.97413 0.96114 1.00837 1.70149 1.09407 1.44623 1.29482 0.84745 0.77434 0.79256 0.75442 1.18409 1.19055 1.18482 1.21374 0.94206 0.96289 0.93635 0.85499 0.89442 0.86583 0.78976 0.81764 0.81762 0.81760 0.85255 0.91542 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.39 8.92 71.23 0.64 -1.75 16 2 C 0.40 9.80 7.22 28.00 0.20 10.00 16 3 O -0.51 -16.61 17.07 -3.00 -0.05 -16.66 16 4 C -0.20 -5.47 5.87 -20.18 -0.12 -5.59 16 5 C -0.02 -0.55 9.46 22.60 0.21 -0.34 16 6 C -0.17 -4.79 9.99 22.23 0.22 -4.57 16 7 C 0.13 4.92 6.96 22.71 0.16 5.08 16 8 F -0.15 -6.54 16.60 44.97 0.75 -5.80 16 9 C -0.08 -3.19 4.95 -20.05 -0.10 -3.29 16 10 C -0.16 -6.57 5.01 -19.93 -0.10 -6.67 16 11 C -0.02 -0.71 9.72 22.46 0.22 -0.49 16 12 C -0.22 -7.21 10.01 22.31 0.22 -6.99 16 13 C 0.14 5.51 7.29 22.40 0.16 5.67 16 14 F -0.14 -5.25 17.26 44.97 0.78 -4.48 16 15 C -0.29 -13.20 9.14 22.40 0.20 -13.00 16 16 C 0.16 8.02 6.43 22.80 0.15 8.17 16 17 O -0.19 -11.26 8.90 -21.63 -0.19 -11.45 16 18 C -0.42 -24.40 9.49 67.92 0.64 -23.76 16 19 H 0.10 5.20 5.21 -2.91 -0.02 5.18 16 20 C -0.01 -0.44 5.49 84.83 0.47 0.03 16 21 N -0.90 -53.04 13.67 21.61 0.30 -52.75 16 22 Si 1.01 42.40 29.55 68.60 2.03 44.43 16 23 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 24 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 25 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 26 C -0.04 -1.28 9.27 22.80 0.21 -1.07 16 27 H 0.13 0.79 8.08 -2.39 -0.02 0.77 16 28 H 0.09 1.08 8.12 -2.39 -0.02 1.06 16 29 H 0.12 1.04 8.08 -2.39 -0.02 1.02 16 30 H 0.19 2.06 7.03 -2.91 -0.02 2.04 16 31 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 32 H 0.16 4.21 8.06 -2.91 -0.02 4.19 16 33 H 0.16 4.05 8.06 -2.91 -0.02 4.03 16 34 H 0.13 6.12 5.64 -2.91 -0.02 6.10 16 35 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 36 H 0.13 4.62 7.64 -2.91 -0.02 4.60 16 Total: -1.00 -75.83 331.88 8.14 -67.69 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 1.15 Total: 17.55 kcal Atomic # 6 Polarization: -41.93 SS G_CDS: 3.39 Total: -38.54 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.30 Total: -52.75 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.24 Total: -28.11 kcal Atomic # 9 Polarization: -11.80 SS G_CDS: 1.52 Total: -10.27 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -75.83 8.14 -67.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241300181.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.274 kcal (2) G-P(sol) polarization free energy of solvation -75.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds