Wall clock time and date at job start Tue Mar 31 2020 12:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39736 * 120.06821 * 7.21122 * 3 2 1 5 5 C 1.38276 * 120.11279 * 179.97438 * 4 3 2 6 6 F 1.35098 * 119.87767 * 180.02562 * 5 4 3 7 7 C 1.38312 * 120.25197 * 0.02562 * 5 4 3 8 8 C 1.39626 * 120.13297 * 359.97438 * 7 5 4 9 9 C 1.47982 * 120.05377 * 180.02562 * 8 7 5 10 10 N 1.31550 * 119.44316 * 137.64623 * 9 8 7 11 11 C 1.33643 * 121.74938 * 180.26829 * 10 9 8 12 12 C 1.40481 * 120.98802 * 179.69000 * 11 10 9 13 13 C 1.36250 * 119.70613 * 180.02562 * 12 11 10 14 14 C 1.39154 * 121.75733 * 359.97329 * 13 12 11 15 15 C 1.36137 * 121.46617 * 0.04346 * 14 13 12 16 16 C 1.40786 * 119.46664 * 359.96190 * 15 14 13 17 17 C 1.40017 * 121.41139 * 179.97438 * 16 15 14 18 18 C 1.40382 * 117.96159 * 180.02562 * 17 16 15 19 19 C 1.40849 * 120.41173 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99927 * 145.30959 * 19 18 17 21 21 C 1.40095 * 119.99858 * 325.31564 * 19 18 17 22 22 N 1.30759 * 120.00225 * 153.79362 * 21 19 18 23 23 Si 1.86801 * 120.00041 * 333.78809 * 21 19 18 24 24 H 1.48501 * 109.47246 * 268.38571 * 23 21 19 25 25 H 1.48506 * 109.46954 * 28.38426 * 23 21 19 26 26 H 1.48495 * 109.47115 * 148.38495 * 23 21 19 27 27 C 1.39339 * 119.88779 * 0.27529 * 8 7 5 28 28 H 1.08006 * 119.94094 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.93477 * 179.97438 * 7 5 4 30 30 H 1.08000 * 120.14917 * 359.97438 * 12 11 10 31 31 H 1.08007 * 119.11743 * 179.97438 * 13 12 11 32 32 H 1.08006 * 119.26969 * 180.02562 * 14 13 12 33 33 H 1.08002 * 120.26709 * 180.02562 * 15 14 13 34 34 H 1.08002 * 121.01521 * 359.97438 * 17 16 15 35 35 H 0.96996 * 120.00563 * 179.97438 * 22 21 19 36 36 H 1.08004 * 120.12684 * 179.72555 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 -1.1988 -0.1518 5 6 4.6514 -1.1992 -0.1525 6 9 5.3240 -2.3615 -0.3001 7 6 5.3487 -0.0141 -0.0026 8 6 4.6591 1.1904 0.1499 9 6 5.4068 2.4574 0.3096 10 7 5.0026 3.5321 -0.3324 11 6 5.6461 4.6985 -0.2259 12 6 5.2042 5.8348 -0.9239 13 6 5.8804 7.0108 -0.7966 14 6 7.0071 7.1239 0.0122 15 6 7.4873 6.0612 0.7147 16 6 6.8320 4.8184 0.6245 17 6 7.2910 3.6987 1.3288 18 6 6.5827 2.4951 1.1856 19 6 6.9994 1.3368 1.8700 20 1 6.2667 0.6321 2.2347 21 6 8.3642 1.0988 2.0777 22 7 8.7541 0.3706 3.0913 23 14 9.6272 1.8217 0.9064 24 1 9.9115 0.8476 -0.1778 25 1 9.0947 3.0766 0.3173 26 1 10.8794 2.1156 1.6486 27 6 3.2657 1.1967 0.1566 28 1 2.7292 -2.1271 -0.2688 29 1 6.4286 -0.0204 -0.0034 30 1 4.3329 5.7762 -1.5592 31 1 5.5326 7.8783 -1.3378 32 1 7.5122 8.0759 0.0840 33 1 8.3632 6.1709 1.3369 34 1 8.1637 3.7589 1.9622 35 1 9.6991 0.2055 3.2350 36 1 2.7284 2.1256 0.2787 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241654626.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:01 Heat of formation + Delta-G solvation = 51.185309 kcal Electronic energy + Delta-G solvation = -24563.739956 eV Core-core repulsion = 20891.629407 eV Total energy + Delta-G solvation = -3672.110549 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.67147 -39.66229 -38.76338 -36.62664 -35.87763 -34.33762 -32.39956 -31.89221 -30.64076 -29.92179 -28.62270 -25.78662 -24.18688 -23.75554 -21.92866 -21.55109 -20.88755 -19.06631 -18.15473 -16.77391 -16.43300 -16.12171 -16.04911 -15.85644 -15.40704 -15.28990 -14.86762 -13.88697 -13.79729 -13.65047 -13.51110 -13.30268 -13.23643 -13.04722 -12.91122 -12.48368 -12.34957 -12.22307 -11.79342 -11.68860 -11.47390 -11.33530 -11.27979 -10.88117 -10.81110 -10.59514 -10.22299 -9.78827 -9.09519 -8.94586 -8.60300 -8.53587 -7.64275 -7.44515 -7.40136 -4.82516 0.73240 1.03679 1.48518 1.74980 2.67181 2.76453 2.91670 2.93954 3.01794 3.15638 3.53416 3.71047 3.79066 3.94740 4.35923 4.44306 4.76451 5.02341 5.11097 5.13378 5.34189 5.44187 5.45582 5.51054 5.61176 5.86089 5.93139 5.95341 6.07939 6.15233 6.23610 6.33742 6.42752 6.61379 6.71298 6.73424 6.90897 6.96240 7.02379 7.11502 7.31987 7.43477 7.49247 7.56022 7.86113 8.07423 8.26061 8.83328 9.55177 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010072 B = 0.005778 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.196776 B = 4844.457357 C = 7135.901829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.267 3.733 3 C -0.016 4.016 4 C -0.114 4.114 5 C 0.093 3.907 6 F -0.136 7.136 7 C -0.085 4.085 8 C 0.026 3.974 9 C 0.117 3.883 10 N -0.444 5.444 11 C 0.025 3.975 12 C -0.054 4.054 13 C -0.178 4.178 14 C -0.106 4.106 15 C -0.141 4.141 16 C -0.027 4.027 17 C -0.216 4.216 18 C 0.054 3.946 19 C -0.421 4.421 20 H 0.106 0.894 21 C 0.090 3.910 22 N -0.765 5.765 23 Si 0.865 3.135 24 H -0.264 1.264 25 H -0.213 1.213 26 H -0.271 1.271 27 C -0.057 4.057 28 H 0.139 0.861 29 H 0.158 0.842 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.294 0.706 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.699 1.286 -4.312 4.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.048 4.048 3 C -0.019 4.019 4 C -0.136 4.136 5 C 0.073 3.927 6 F -0.114 7.114 7 C -0.105 4.105 8 C 0.025 3.975 9 C -0.039 4.039 10 N -0.151 5.151 11 C -0.097 4.097 12 C -0.073 4.073 13 C -0.198 4.198 14 C -0.124 4.124 15 C -0.160 4.160 16 C -0.029 4.029 17 C -0.241 4.241 18 C 0.049 3.951 19 C -0.447 4.447 20 H 0.124 0.876 21 C -0.135 4.135 22 N -0.385 5.385 23 Si 0.687 3.313 24 H -0.189 1.189 25 H -0.135 1.135 26 H -0.195 1.195 27 C -0.078 4.078 28 H 0.157 0.843 29 H 0.175 0.825 30 H 0.135 0.865 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.982 1.185 -4.679 5.674 hybrid contribution 2.084 0.004 0.338 2.111 sum -0.898 1.189 -4.341 4.590 Atomic orbital electron populations 1.81219 1.11973 1.07593 1.09321 1.25549 0.92442 0.93451 0.93336 1.15472 0.84217 0.94168 1.08062 1.20967 0.92487 0.97981 1.02129 1.17196 0.89279 0.81918 1.04263 1.91515 1.80308 1.46278 1.93335 1.21744 1.02749 0.89853 0.96146 1.18049 0.91235 0.91530 0.96671 1.20766 0.96293 0.90173 0.96683 1.67347 1.29013 0.98255 1.20438 1.19235 0.95874 0.91930 1.02661 1.20541 0.98381 0.91184 0.97147 1.20327 0.98442 0.97493 1.03521 1.20548 0.96625 0.97927 0.97267 1.20864 1.00448 0.92812 1.01880 1.19554 0.94202 0.94042 0.95141 1.21114 1.04468 0.91209 1.07324 1.19160 0.91326 0.93722 0.90905 1.19507 0.93214 1.05291 1.26691 0.87644 1.26241 0.99816 0.93186 0.94276 1.69706 1.19822 1.27306 1.21656 0.86740 0.78971 0.83568 0.82064 1.18936 1.13503 1.19549 1.21352 0.93370 0.96675 0.96437 0.84284 0.82459 0.86497 0.87348 0.87517 0.86932 0.86958 0.89512 0.84289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.69 18.54 41.84 0.78 -5.91 16 2 C 0.27 3.78 15.32 -22.47 -0.34 3.43 16 3 C -0.02 -0.21 5.72 -107.00 -0.61 -0.83 16 4 C -0.11 -1.46 9.72 -39.01 -0.38 -1.84 16 5 C 0.09 1.36 7.28 -39.54 -0.29 1.07 16 6 F -0.14 -2.03 17.26 2.25 0.04 -1.99 16 7 C -0.08 -1.39 7.94 -39.04 -0.31 -1.70 16 8 C 0.03 0.46 5.32 -104.98 -0.56 -0.10 16 9 C 0.12 2.36 6.56 -80.59 -0.53 1.83 16 10 N -0.44 -9.12 10.04 -4.82 -0.05 -9.17 16 11 C 0.02 0.51 6.74 -82.94 -0.56 -0.05 16 12 C -0.05 -0.95 9.98 -39.45 -0.39 -1.35 16 13 C -0.18 -2.81 9.90 -39.96 -0.40 -3.21 16 14 C -0.11 -1.68 9.91 -40.00 -0.40 -2.08 16 15 C -0.14 -2.53 9.80 -39.37 -0.39 -2.92 16 16 C -0.03 -0.56 5.87 -104.98 -0.62 -1.18 16 17 C -0.22 -4.61 6.47 -38.11 -0.25 -4.86 16 18 C 0.05 1.17 5.01 -104.70 -0.52 0.64 16 19 C -0.42 -9.17 6.87 -37.90 -0.26 -9.43 16 20 H 0.11 2.39 7.04 -52.49 -0.37 2.02 16 21 C 0.09 1.94 5.25 -17.31 -0.09 1.85 16 22 N -0.76 -17.05 13.92 55.56 0.77 -16.28 16 23 Si 0.87 16.65 26.40 -169.99 -4.49 12.16 16 24 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 25 H -0.21 -4.23 5.10 56.52 0.29 -3.95 16 26 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 27 C -0.06 -0.86 9.32 -38.76 -0.36 -1.22 16 28 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 29 H 0.16 2.75 6.64 -52.49 -0.35 2.40 16 30 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 31 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16 33 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.11 2.33 6.18 -52.49 -0.32 2.01 16 35 H 0.29 5.93 8.29 -40.82 -0.34 5.60 16 36 H 0.14 2.08 8.06 -52.48 -0.42 1.65 16 LS Contribution 325.00 15.07 4.90 4.90 Total: -1.00 -23.95 325.00 -8.13 -32.08 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -2.83 Total: 6.14 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -7.25 Total: -21.93 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 1.50 Total: -31.36 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 16.65 SS G_CDS: -4.49 Total: 12.16 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -23.95 -8.13 -32.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241654626.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.267 kcal (2) G-P(sol) polarization free energy of solvation -23.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds