Wall clock time and date at job start Tue Mar 31 2020 12:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39736 * 120.06821 * 7.21122 * 3 2 1 5 5 C 1.38276 * 120.11279 * 179.97438 * 4 3 2 6 6 F 1.35098 * 119.87767 * 180.02562 * 5 4 3 7 7 C 1.38312 * 120.25197 * 0.02562 * 5 4 3 8 8 C 1.39626 * 120.13297 * 359.97438 * 7 5 4 9 9 C 1.47982 * 120.05377 * 180.02562 * 8 7 5 10 10 N 1.31550 * 119.44316 * 137.64623 * 9 8 7 11 11 C 1.33643 * 121.74938 * 180.26829 * 10 9 8 12 12 C 1.40481 * 120.98802 * 179.69000 * 11 10 9 13 13 C 1.36250 * 119.70613 * 180.02562 * 12 11 10 14 14 C 1.39154 * 121.75733 * 359.97329 * 13 12 11 15 15 C 1.36137 * 121.46617 * 0.04346 * 14 13 12 16 16 C 1.40786 * 119.46664 * 359.96190 * 15 14 13 17 17 C 1.40017 * 121.41139 * 179.97438 * 16 15 14 18 18 C 1.40382 * 117.96159 * 180.02562 * 17 16 15 19 19 C 1.40849 * 120.41173 * 179.97438 * 18 17 16 20 20 H 1.07996 * 119.99927 * 145.30959 * 19 18 17 21 21 C 1.40095 * 119.99858 * 325.31564 * 19 18 17 22 22 N 1.30759 * 120.00225 * 153.79362 * 21 19 18 23 23 Si 1.86801 * 120.00041 * 333.78809 * 21 19 18 24 24 H 1.48501 * 109.47246 * 268.38571 * 23 21 19 25 25 H 1.48506 * 109.46954 * 28.38426 * 23 21 19 26 26 H 1.48495 * 109.47115 * 148.38495 * 23 21 19 27 27 C 1.39339 * 119.88779 * 0.27529 * 8 7 5 28 28 H 1.08006 * 119.94094 * 359.97438 * 4 3 2 29 29 H 1.07998 * 119.93477 * 179.97438 * 7 5 4 30 30 H 1.08000 * 120.14917 * 359.97438 * 12 11 10 31 31 H 1.08007 * 119.11743 * 179.97438 * 13 12 11 32 32 H 1.08006 * 119.26969 * 180.02562 * 14 13 12 33 33 H 1.08002 * 120.26709 * 180.02562 * 15 14 13 34 34 H 1.08002 * 121.01521 * 359.97438 * 17 16 15 35 35 H 0.96996 * 120.00563 * 179.97438 * 22 21 19 36 36 H 1.08004 * 120.12684 * 179.72555 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 -1.1988 -0.1518 5 6 4.6514 -1.1992 -0.1525 6 9 5.3240 -2.3615 -0.3001 7 6 5.3487 -0.0141 -0.0026 8 6 4.6591 1.1904 0.1499 9 6 5.4068 2.4574 0.3096 10 7 5.0026 3.5321 -0.3324 11 6 5.6461 4.6985 -0.2259 12 6 5.2042 5.8348 -0.9239 13 6 5.8804 7.0108 -0.7966 14 6 7.0071 7.1239 0.0122 15 6 7.4873 6.0612 0.7147 16 6 6.8320 4.8184 0.6245 17 6 7.2910 3.6987 1.3288 18 6 6.5827 2.4951 1.1856 19 6 6.9994 1.3368 1.8700 20 1 6.2667 0.6321 2.2347 21 6 8.3642 1.0988 2.0777 22 7 8.7541 0.3706 3.0913 23 14 9.6272 1.8217 0.9064 24 1 9.9115 0.8476 -0.1778 25 1 9.0947 3.0766 0.3173 26 1 10.8794 2.1156 1.6486 27 6 3.2657 1.1967 0.1566 28 1 2.7292 -2.1271 -0.2688 29 1 6.4286 -0.0204 -0.0034 30 1 4.3329 5.7762 -1.5592 31 1 5.5326 7.8783 -1.3378 32 1 7.5122 8.0759 0.0840 33 1 8.3632 6.1709 1.3369 34 1 8.1637 3.7589 1.9622 35 1 9.6991 0.2055 3.2350 36 1 2.7284 2.1256 0.2787 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241654626.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:01 Heat of formation + Delta-G solvation = 42.232901 kcal Electronic energy + Delta-G solvation = -24564.128162 eV Core-core repulsion = 20891.629407 eV Total energy + Delta-G solvation = -3672.498755 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.87533 -41.07747 -40.06817 -37.94241 -37.19284 -35.90802 -33.93804 -33.19658 -31.89023 -31.37733 -29.99272 -27.31307 -25.51274 -25.05326 -23.43569 -22.85600 -22.34229 -20.39361 -19.64417 -18.18306 -17.84249 -17.42507 -17.30982 -17.14655 -16.68192 -16.58285 -16.33233 -15.27180 -15.17628 -14.97860 -14.86382 -14.65472 -14.57558 -14.46026 -14.22314 -13.91793 -13.74676 -13.65070 -13.11256 -12.97411 -12.91148 -12.80922 -12.54963 -12.25710 -12.17928 -12.10151 -11.72548 -11.37995 -10.61563 -10.27737 -10.02371 -9.83025 -9.14181 -9.03867 -8.85182 -6.46206 -0.54804 -0.25156 0.08435 0.35118 1.21643 1.35801 1.43762 1.50410 1.55549 1.76729 2.11212 2.14565 2.57919 2.69835 2.82604 3.15709 3.47824 3.58896 3.88673 3.91728 3.94683 4.11475 4.16710 4.24689 4.30996 4.50050 4.55272 4.59014 4.76457 4.88231 4.96825 4.99812 5.04584 5.21930 5.28681 5.38173 5.48003 5.56114 5.70756 5.75120 5.81178 5.88149 6.13882 6.24613 6.33581 6.50858 6.64095 7.28311 7.99118 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010072 B = 0.005778 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.196776 B = 4844.457357 C = 7135.901829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.288 3.712 3 C -0.005 4.005 4 C -0.087 4.087 5 C 0.092 3.908 6 F -0.136 7.136 7 C -0.090 4.090 8 C 0.005 3.995 9 C 0.112 3.888 10 N -0.455 5.455 11 C 0.006 3.994 12 C -0.072 4.072 13 C -0.158 4.158 14 C -0.096 4.096 15 C -0.156 4.156 16 C -0.053 4.053 17 C -0.228 4.228 18 C 0.041 3.959 19 C -0.439 4.439 20 H 0.086 0.914 21 C 0.069 3.931 22 N -0.803 5.803 23 Si 0.910 3.090 24 H -0.264 1.264 25 H -0.225 1.225 26 H -0.262 1.262 27 C -0.050 4.050 28 H 0.174 0.826 29 H 0.140 0.860 30 H 0.133 0.867 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.126 0.874 34 H 0.109 0.891 35 H 0.300 0.700 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.534 2.945 -5.767 6.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.027 4.027 3 C -0.009 4.009 4 C -0.108 4.108 5 C 0.072 3.928 6 F -0.115 7.115 7 C -0.110 4.110 8 C 0.004 3.996 9 C -0.044 4.044 10 N -0.161 5.161 11 C -0.116 4.116 12 C -0.090 4.090 13 C -0.178 4.178 14 C -0.114 4.114 15 C -0.175 4.175 16 C -0.055 4.055 17 C -0.254 4.254 18 C 0.036 3.964 19 C -0.467 4.467 20 H 0.104 0.896 21 C -0.152 4.152 22 N -0.426 5.426 23 Si 0.730 3.270 24 H -0.189 1.189 25 H -0.148 1.148 26 H -0.187 1.187 27 C -0.072 4.072 28 H 0.191 0.809 29 H 0.158 0.842 30 H 0.151 0.849 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.819 2.845 -6.135 7.767 hybrid contribution 2.219 -0.268 0.664 2.332 sum -1.599 2.578 -5.471 6.256 Atomic orbital electron populations 1.81255 1.12569 1.08302 1.10087 1.25334 0.92057 0.92739 0.92595 1.15318 0.83926 0.93837 1.07786 1.21218 0.91549 0.98952 0.99071 1.17151 0.89902 0.81192 1.04528 1.91516 1.80516 1.46097 1.93369 1.21621 1.02124 0.90602 0.96689 1.17944 0.91985 0.90694 0.98969 1.21089 0.96085 0.91225 0.96011 1.67431 1.29403 0.98549 1.20723 1.19804 0.95972 0.92865 1.02939 1.20837 0.99560 0.91021 0.97631 1.20854 0.97149 0.97886 1.01905 1.21033 0.96173 0.98802 0.95380 1.21136 1.01094 0.92436 1.02830 1.19865 0.94956 0.95005 0.95654 1.21228 1.04578 0.91784 1.07768 1.19319 0.92218 0.93663 0.91232 1.19309 0.93158 1.05626 1.28575 0.89628 1.26643 1.00612 0.93228 0.94751 1.69720 1.20455 1.29470 1.22911 0.86098 0.77786 0.82329 0.80794 1.18935 1.14791 1.18667 1.21303 0.92471 0.97499 0.95902 0.80856 0.84211 0.84877 0.83354 0.83524 0.85582 0.87301 0.88900 0.84147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -13.21 18.54 19.00 0.35 -12.85 16 2 C 0.29 7.54 15.32 88.33 1.35 8.89 16 3 C -0.01 -0.13 5.72 -21.40 -0.12 -0.25 16 4 C -0.09 -2.03 9.72 22.64 0.22 -1.81 16 5 C 0.09 2.62 7.28 22.30 0.16 2.78 16 6 F -0.14 -3.98 17.26 44.97 0.78 -3.21 16 7 C -0.09 -3.05 7.94 22.62 0.18 -2.87 16 8 C 0.01 0.19 5.32 -20.09 -0.11 0.08 16 9 C 0.11 4.67 6.56 43.98 0.29 4.96 16 10 N -0.45 -18.86 10.04 -169.17 -1.70 -20.56 16 11 C 0.01 0.24 6.74 41.55 0.28 0.52 16 12 C -0.07 -2.38 9.98 22.35 0.22 -2.15 16 13 C -0.16 -4.33 9.90 22.03 0.22 -4.12 16 14 C -0.10 -2.67 9.91 22.00 0.22 -2.45 16 15 C -0.16 -5.32 9.80 22.40 0.22 -5.10 16 16 C -0.05 -2.17 5.87 -20.09 -0.12 -2.29 16 17 C -0.23 -10.05 6.47 23.22 0.15 -9.90 16 18 C 0.04 1.83 5.01 -19.91 -0.10 1.73 16 19 C -0.44 -20.32 6.87 23.36 0.16 -20.16 16 20 H 0.09 4.18 7.04 -2.91 -0.02 4.16 16 21 C 0.07 3.12 5.25 85.30 0.45 3.57 16 22 N -0.80 -37.52 13.92 21.85 0.30 -37.22 16 23 Si 0.91 35.59 26.40 68.60 1.81 37.40 16 24 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 25 H -0.23 -9.15 5.10 99.48 0.51 -8.64 16 26 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 27 C -0.05 -1.51 9.32 22.80 0.21 -1.29 16 28 H 0.17 2.94 8.06 -2.91 -0.02 2.91 16 29 H 0.14 5.23 6.64 -2.91 -0.02 5.21 16 30 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 31 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 32 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 33 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 34 H 0.11 4.70 6.18 -2.91 -0.02 4.69 16 35 H 0.30 12.63 8.29 -92.71 -0.77 11.86 16 36 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 Total: -1.00 -53.35 325.00 6.39 -46.96 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.95 Total: 19.34 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 3.89 Total: -29.87 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -1.04 Total: -70.63 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.78 Total: -3.21 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 1.81 Total: 37.40 kcal Total: -53.35 6.39 -46.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241654626.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.193 kcal (2) G-P(sol) polarization free energy of solvation -53.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds