Wall clock time and date at job start Tue Mar 31 2020 11:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47218 * 2 1 4 4 O 1.42898 * 109.47302 * 120.00388 * 2 1 3 5 5 C 1.35780 * 116.99917 * 82.81703 * 4 2 1 6 6 C 1.38994 * 119.91143 * 2.99453 * 5 4 2 7 7 C 1.37714 * 120.10968 * 179.97438 * 6 5 4 8 8 C 1.39826 * 119.92614 * 0.02562 * 7 6 5 9 9 C 1.47636 * 120.09267 * 179.97438 * 8 7 6 10 10 N 1.32924 * 120.25621 * 224.13385 * 9 8 7 11 11 C 1.31995 * 120.07003 * 179.74240 * 10 9 8 12 12 C 1.39205 * 120.60179 * 0.56418 * 11 10 9 13 13 N 1.31604 * 120.51858 * 359.68952 * 12 11 10 14 14 C 1.33985 * 119.90075 * 0.02846 * 13 12 11 15 15 C 1.40737 * 120.28826 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99951 * 189.22771 * 15 14 13 17 17 C 1.40154 * 119.99792 * 9.22701 * 15 14 13 18 18 N 1.30700 * 120.00306 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99827 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47110 * 59.99488 * 19 17 15 21 21 H 1.48493 * 109.47272 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47118 * 299.99844 * 19 17 15 23 23 C 1.39800 * 119.81708 * 359.97438 * 8 7 6 24 24 C 1.37814 * 119.88975 * 0.27630 * 23 8 7 25 25 Cl 1.73600 * 119.96298 * 179.70147 * 24 23 8 26 26 H 1.08998 * 109.47058 * 299.99102 * 1 2 3 27 27 H 1.08997 * 109.47360 * 59.99865 * 1 2 3 28 28 H 1.08999 * 109.46791 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46438 * 240.00558 * 2 1 3 30 30 H 1.08998 * 109.47339 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47147 * 300.00304 * 3 2 1 32 32 H 1.09004 * 109.46937 * 60.00093 * 3 2 1 33 33 H 1.08000 * 119.94611 * 359.97438 * 6 5 4 34 34 H 1.08005 * 120.03522 * 180.02562 * 7 6 5 35 35 H 1.08004 * 119.69775 * 180.28085 * 11 10 9 36 36 H 1.07994 * 119.74241 * 179.72013 * 12 11 10 37 37 H 0.97001 * 120.00029 * 179.97438 * 18 17 15 38 38 H 1.07999 * 120.05472 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0693 -2.0290 1.1134 6 6 1.7385 -2.6925 -0.0623 7 6 1.8013 -4.0670 -0.1210 8 6 2.1981 -4.7959 1.0043 9 6 2.2662 -6.2695 0.9456 10 7 1.7838 -7.0026 1.9440 11 6 1.8421 -8.3199 1.8854 12 6 2.4169 -8.9557 0.7885 13 7 2.9061 -8.2528 -0.2108 14 6 2.8527 -6.9145 -0.1751 15 6 3.3730 -6.1548 -1.2395 16 1 3.4644 -5.0829 -1.1437 17 6 3.7724 -6.7892 -2.4236 18 7 3.6623 -8.0864 -2.5393 19 14 4.4636 -5.7809 -3.8361 20 1 5.6836 -5.0655 -3.3831 21 1 4.8091 -6.6818 -4.9648 22 1 3.4482 -4.7937 -4.2829 23 6 2.5301 -4.1254 2.1852 24 6 2.4596 -2.7500 2.2372 25 17 2.8640 -1.9159 3.7050 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.4317 -2.1292 -0.9312 34 1 1.5444 -4.5813 -1.0354 35 1 1.4442 -8.9098 2.6979 36 1 2.4612 -10.0343 0.7570 37 1 3.9384 -8.5254 -3.3590 38 1 2.8375 -4.6845 3.0566 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241825079.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:19 Heat of formation + Delta-G solvation = 14.436984 kcal Electronic energy + Delta-G solvation = -23718.318476 eV Core-core repulsion = 20165.641855 eV Total energy + Delta-G solvation = -3552.676621 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.07964 -39.07528 -37.29617 -35.95551 -34.25654 -33.29287 -32.21060 -31.06478 -30.39624 -28.25628 -27.35214 -26.21536 -23.77036 -22.66730 -22.13850 -21.17861 -20.25842 -18.20855 -17.72214 -16.28357 -16.23695 -15.58302 -15.40757 -14.98967 -14.49335 -14.32449 -14.07525 -13.90752 -13.27957 -13.23662 -12.86486 -12.73859 -12.44302 -12.35808 -12.31727 -11.94425 -11.62982 -11.54514 -11.44898 -11.23127 -11.14739 -10.77756 -10.65440 -10.59531 -10.32817 -10.25273 -9.89282 -9.65375 -9.24151 -8.46058 -8.14391 -7.62374 -7.30767 -6.68314 -4.81944 1.58513 1.68463 2.44943 2.58249 2.87973 2.92226 2.93933 3.09140 3.30097 3.71225 4.15370 4.50013 4.69917 4.83446 4.96041 5.16645 5.28627 5.36699 5.40893 5.55716 5.61294 5.63092 5.70998 5.84560 5.89426 5.97636 6.00206 6.05563 6.09645 6.26924 6.32645 6.48499 6.64546 6.79081 6.89233 6.92392 7.12136 7.24868 7.53441 7.62662 7.89147 8.24018 8.49965 9.10229 9.68840 9.94905 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.004867 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.058806 B = 5752.209522 C = 7428.757523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.074 3.926 3 C -0.146 4.146 4 O -0.303 6.303 5 C 0.119 3.881 6 C -0.204 4.204 7 C -0.058 4.058 8 C 0.006 3.994 9 C -0.030 4.030 10 N -0.411 5.411 11 C -0.115 4.115 12 C 0.089 3.911 13 N -0.453 5.453 14 C 0.223 3.777 15 C -0.406 4.406 16 H 0.099 0.901 17 C 0.066 3.934 18 N -0.704 5.704 19 Si 0.909 3.091 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.260 1.260 23 C -0.064 4.064 24 C -0.068 4.068 25 Cl -0.077 7.077 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.142 0.858 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.281 0.719 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 11.960 0.194 12.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.018 3.982 3 C -0.203 4.203 4 O -0.217 6.217 5 C 0.073 3.927 6 C -0.222 4.222 7 C -0.077 4.077 8 C 0.003 3.997 9 C -0.177 4.177 10 N -0.123 5.123 11 C -0.277 4.277 12 C -0.082 4.082 13 N -0.169 5.169 14 C 0.099 3.901 15 C -0.436 4.436 16 H 0.117 0.883 17 C -0.162 4.162 18 N -0.323 5.323 19 Si 0.732 3.268 20 H -0.184 1.184 21 H -0.198 1.198 22 H -0.184 1.184 23 C -0.083 4.083 24 C -0.095 4.095 25 Cl -0.049 7.049 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.150 0.850 34 H 0.160 0.840 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.092 0.908 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.537 11.957 0.294 12.227 hybrid contribution 0.251 0.115 -0.643 0.699 sum -2.287 12.072 -0.349 12.291 Atomic orbital electron populations 1.22365 0.95250 1.03325 1.02746 1.22410 0.94233 0.93531 0.88024 1.21818 1.02118 0.93651 1.02725 1.86120 1.80869 1.15733 1.39000 1.18605 0.98549 0.82562 0.92958 1.21052 1.08941 0.95414 0.96825 1.21366 0.95058 0.92340 0.98980 1.18164 0.97994 0.91411 0.92082 1.19985 1.10371 0.91390 0.95929 1.67712 1.11789 1.06942 1.25868 1.22575 1.12739 0.90944 1.01400 1.23556 0.93591 1.00086 0.91018 1.69540 1.17816 1.05877 1.23656 1.19200 0.90263 0.89243 0.91416 1.19822 1.31980 0.95713 0.96045 0.88276 1.26208 0.94546 0.95142 1.00314 1.70029 1.27372 1.09378 1.25542 0.86329 0.80559 0.80398 0.79548 1.18419 1.19838 1.18399 1.21006 0.98262 0.90256 0.98810 1.19949 1.11018 0.91720 0.86841 1.98313 1.92692 1.78796 1.35076 0.91604 0.91283 0.91585 0.90711 0.91678 0.90769 0.91607 0.84989 0.84039 0.85329 0.85127 0.90785 0.84773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.81 9.24 37.16 0.34 -1.47 16 2 C 0.07 0.84 2.87 -26.73 -0.08 0.76 16 3 C -0.15 -1.32 9.56 37.16 0.36 -0.96 16 4 O -0.30 -4.54 9.25 -19.05 -0.18 -4.71 16 5 C 0.12 2.00 6.55 -38.98 -0.26 1.74 16 6 C -0.20 -3.31 8.28 -39.49 -0.33 -3.63 16 7 C -0.06 -1.10 7.52 -39.18 -0.29 -1.40 16 8 C 0.01 0.12 5.28 -104.88 -0.55 -0.44 16 9 C -0.03 -0.74 6.41 -82.12 -0.53 -1.26 16 10 N -0.41 -9.85 10.31 -8.99 -0.09 -9.94 16 11 C -0.11 -2.56 11.22 -17.12 -0.19 -2.75 16 12 C 0.09 2.04 11.22 -17.29 -0.19 1.84 16 13 N -0.45 -11.80 8.10 -10.72 -0.09 -11.88 16 14 C 0.22 5.74 6.51 -84.55 -0.55 5.19 16 15 C -0.41 -9.84 7.49 -37.92 -0.28 -10.13 16 16 H 0.10 2.25 5.33 -52.49 -0.28 1.97 16 17 C 0.07 1.53 5.49 -17.31 -0.10 1.43 16 18 N -0.70 -17.22 11.53 55.56 0.64 -16.58 16 19 Si 0.91 16.97 29.56 -169.99 -5.03 11.95 16 20 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 21 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 22 H -0.26 -4.68 7.11 56.52 0.40 -4.27 16 23 C -0.06 -1.25 9.44 -39.15 -0.37 -1.62 16 24 C -0.07 -1.23 6.33 -39.41 -0.25 -1.47 16 25 Cl -0.08 -1.26 28.49 -51.86 -1.48 -2.74 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.75 7.26 -51.93 -0.38 0.37 16 29 H 0.08 0.82 6.02 -51.93 -0.31 0.51 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.13 1.77 5.64 -52.49 -0.30 1.47 16 34 H 0.14 2.71 6.75 -52.48 -0.35 2.36 16 35 H 0.13 2.45 8.06 -52.48 -0.42 2.03 16 36 H 0.13 2.55 8.06 -52.49 -0.42 2.12 16 37 H 0.28 6.20 8.29 -40.82 -0.34 5.86 16 38 H 0.13 2.64 8.06 -52.49 -0.42 2.22 16 LS Contribution 336.13 15.07 5.07 5.07 Total: -1.00 -28.09 336.13 -8.56 -36.64 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.14 Total: 6.36 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -3.27 Total: -14.17 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.46 Total: -38.40 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.18 Total: -4.71 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.95 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.48 Total: -2.74 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.09 -8.56 -36.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241825079.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.081 kcal (2) G-P(sol) polarization free energy of solvation -28.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds