Wall clock time and date at job start Tue Mar 31 2020 11:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47218 * 2 1 4 4 O 1.42898 * 109.47302 * 120.00388 * 2 1 3 5 5 C 1.35780 * 116.99917 * 82.81703 * 4 2 1 6 6 C 1.38994 * 119.91143 * 2.99453 * 5 4 2 7 7 C 1.37714 * 120.10968 * 179.97438 * 6 5 4 8 8 C 1.39826 * 119.92614 * 0.02562 * 7 6 5 9 9 C 1.47636 * 120.09267 * 179.97438 * 8 7 6 10 10 N 1.32924 * 120.25621 * 224.13385 * 9 8 7 11 11 C 1.31995 * 120.07003 * 179.74240 * 10 9 8 12 12 C 1.39205 * 120.60179 * 0.56418 * 11 10 9 13 13 N 1.31604 * 120.51858 * 359.68952 * 12 11 10 14 14 C 1.33985 * 119.90075 * 0.02846 * 13 12 11 15 15 C 1.40737 * 120.28826 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99951 * 189.22771 * 15 14 13 17 17 C 1.40154 * 119.99792 * 9.22701 * 15 14 13 18 18 N 1.30700 * 120.00306 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99827 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47110 * 59.99488 * 19 17 15 21 21 H 1.48493 * 109.47272 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47118 * 299.99844 * 19 17 15 23 23 C 1.39800 * 119.81708 * 359.97438 * 8 7 6 24 24 C 1.37814 * 119.88975 * 0.27630 * 23 8 7 25 25 Cl 1.73600 * 119.96298 * 179.70147 * 24 23 8 26 26 H 1.08998 * 109.47058 * 299.99102 * 1 2 3 27 27 H 1.08997 * 109.47360 * 59.99865 * 1 2 3 28 28 H 1.08999 * 109.46791 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46438 * 240.00558 * 2 1 3 30 30 H 1.08998 * 109.47339 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47147 * 300.00304 * 3 2 1 32 32 H 1.09004 * 109.46937 * 60.00093 * 3 2 1 33 33 H 1.08000 * 119.94611 * 359.97438 * 6 5 4 34 34 H 1.08005 * 120.03522 * 180.02562 * 7 6 5 35 35 H 1.08004 * 119.69775 * 180.28085 * 11 10 9 36 36 H 1.07994 * 119.74241 * 179.72013 * 12 11 10 37 37 H 0.97001 * 120.00029 * 179.97438 * 18 17 15 38 38 H 1.07999 * 120.05472 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0693 -2.0290 1.1134 6 6 1.7385 -2.6925 -0.0623 7 6 1.8013 -4.0670 -0.1210 8 6 2.1981 -4.7959 1.0043 9 6 2.2662 -6.2695 0.9456 10 7 1.7838 -7.0026 1.9440 11 6 1.8421 -8.3199 1.8854 12 6 2.4169 -8.9557 0.7885 13 7 2.9061 -8.2528 -0.2108 14 6 2.8527 -6.9145 -0.1751 15 6 3.3730 -6.1548 -1.2395 16 1 3.4644 -5.0829 -1.1437 17 6 3.7724 -6.7892 -2.4236 18 7 3.6623 -8.0864 -2.5393 19 14 4.4636 -5.7809 -3.8361 20 1 5.6836 -5.0655 -3.3831 21 1 4.8091 -6.6818 -4.9648 22 1 3.4482 -4.7937 -4.2829 23 6 2.5301 -4.1254 2.1852 24 6 2.4596 -2.7500 2.2372 25 17 2.8640 -1.9159 3.7050 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.4317 -2.1292 -0.9312 34 1 1.5444 -4.5813 -1.0354 35 1 1.4442 -8.9098 2.6979 36 1 2.4612 -10.0343 0.7570 37 1 3.9384 -8.5254 -3.3590 38 1 2.8375 -4.6845 3.0566 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241825079.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:18 Heat of formation + Delta-G solvation = -0.254394 kcal Electronic energy + Delta-G solvation = -23718.955542 eV Core-core repulsion = 20165.641855 eV Total energy + Delta-G solvation = -3553.313687 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.42632 -40.71431 -38.64277 -37.32699 -36.01119 -34.40470 -33.83801 -32.69190 -31.82351 -29.78712 -28.18203 -27.90711 -25.25000 -24.13443 -23.79828 -22.63147 -21.49172 -19.63990 -19.27626 -17.96905 -17.70262 -16.99725 -16.72181 -16.43046 -16.00270 -15.78423 -15.32250 -15.21454 -14.85937 -14.51734 -14.39819 -14.02771 -13.78802 -13.33342 -13.24421 -13.14644 -13.12477 -12.98052 -12.84069 -12.59713 -12.34707 -12.16280 -11.97508 -11.83520 -11.77874 -11.61173 -11.50305 -11.39617 -10.98943 -9.96223 -9.73977 -9.39422 -8.85117 -8.41693 -6.62745 0.06140 0.24700 0.75835 1.13414 1.23730 1.39970 1.52509 1.54475 2.16720 2.18800 2.66273 2.78045 3.69164 3.73453 3.84780 3.86406 4.00516 4.12314 4.18592 4.21683 4.32626 4.39900 4.53354 4.60997 4.75103 4.80169 4.83112 4.87067 4.91535 4.96528 5.08585 5.14169 5.18445 5.28970 5.31058 5.35923 5.67468 5.69586 5.80901 6.11299 6.40702 6.47429 6.70404 7.30731 7.88275 8.25977 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.004867 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.058806 B = 5752.209522 C = 7428.757523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.061 3.939 3 C -0.142 4.142 4 O -0.310 6.310 5 C 0.133 3.867 6 C -0.191 4.191 7 C -0.060 4.060 8 C -0.026 4.026 9 C -0.039 4.039 10 N -0.430 5.430 11 C -0.119 4.119 12 C 0.077 3.923 13 N -0.488 5.488 14 C 0.192 3.808 15 C -0.423 4.423 16 H 0.108 0.892 17 C 0.025 3.975 18 N -0.742 5.742 19 Si 0.980 3.020 20 H -0.259 1.259 21 H -0.267 1.267 22 H -0.244 1.244 23 C -0.067 4.067 24 C -0.079 4.079 25 Cl -0.064 7.064 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.166 0.834 34 H 0.135 0.865 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.287 0.713 38 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.916 14.532 -1.023 14.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.006 3.994 3 C -0.199 4.199 4 O -0.224 6.224 5 C 0.086 3.914 6 C -0.209 4.209 7 C -0.079 4.079 8 C -0.028 4.028 9 C -0.185 4.185 10 N -0.143 5.143 11 C -0.280 4.280 12 C -0.093 4.093 13 N -0.205 5.205 14 C 0.068 3.932 15 C -0.453 4.453 16 H 0.126 0.874 17 C -0.200 4.200 18 N -0.362 5.362 19 Si 0.799 3.201 20 H -0.184 1.184 21 H -0.192 1.192 22 H -0.168 1.168 23 C -0.087 4.087 24 C -0.106 4.106 25 Cl -0.035 7.035 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.083 0.917 33 H 0.183 0.817 34 H 0.153 0.847 35 H 0.178 0.822 36 H 0.177 0.823 37 H 0.098 0.902 38 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.790 14.531 -0.896 14.823 hybrid contribution 0.270 -0.585 -0.167 0.665 sum -2.520 13.946 -1.063 14.212 Atomic orbital electron populations 1.22362 0.94188 1.02813 1.04055 1.22842 0.95178 0.94491 0.86900 1.21850 1.01900 0.92114 1.04062 1.86145 1.80659 1.14458 1.41162 1.18651 0.96706 0.83614 0.92401 1.21290 1.07506 0.94322 0.97788 1.21329 0.95224 0.93392 0.97978 1.18190 1.00664 0.90268 0.93646 1.20386 1.09647 0.93002 0.95508 1.67789 1.12480 1.07729 1.26257 1.23089 1.12034 0.90872 1.02044 1.24039 0.93200 1.01437 0.90664 1.69495 1.19327 1.06531 1.25147 1.19646 0.91289 0.89635 0.92674 1.20131 1.32413 0.96227 0.96527 0.87384 1.27122 0.94239 0.96086 1.02505 1.70114 1.28291 1.11143 1.26644 0.85263 0.79875 0.78937 0.76018 1.18361 1.19152 1.16773 1.20869 0.98736 0.91083 0.98040 1.19996 1.11231 0.91362 0.88001 1.98311 1.92588 1.78284 1.34325 0.91792 0.88576 0.92965 0.89899 0.92067 0.88046 0.91676 0.81679 0.84691 0.82233 0.82299 0.90191 0.85788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.00 9.24 71.98 0.66 -2.34 16 2 C 0.06 1.18 2.87 30.59 0.09 1.27 16 3 C -0.14 -2.07 9.56 71.98 0.69 -1.38 16 4 O -0.31 -8.53 9.25 -91.09 -0.84 -9.38 16 5 C 0.13 4.24 6.55 22.66 0.15 4.39 16 6 C -0.19 -5.84 8.28 22.33 0.18 -5.65 16 7 C -0.06 -2.26 7.52 22.53 0.17 -2.09 16 8 C -0.03 -1.11 5.28 -20.03 -0.11 -1.22 16 9 C -0.04 -1.96 6.41 42.39 0.27 -1.69 16 10 N -0.43 -21.14 10.31 -182.35 -1.88 -23.02 16 11 C -0.12 -5.39 11.22 84.90 0.95 -4.43 16 12 C 0.08 3.58 11.22 84.96 0.95 4.53 16 13 N -0.49 -26.23 8.10 -187.83 -1.52 -27.76 16 14 C 0.19 10.21 6.51 40.35 0.26 10.47 16 15 C -0.42 -20.94 7.49 23.35 0.17 -20.77 16 16 H 0.11 4.95 5.33 -2.91 -0.02 4.94 16 17 C 0.02 1.16 5.49 85.33 0.47 1.63 16 18 N -0.74 -36.98 11.53 21.86 0.25 -36.73 16 19 Si 0.98 34.15 29.56 68.60 2.03 36.17 16 20 H -0.26 -8.94 7.11 99.48 0.71 -8.24 16 21 H -0.27 -8.93 7.11 99.48 0.71 -8.22 16 22 H -0.24 -7.84 7.11 99.48 0.71 -7.14 16 23 C -0.07 -2.69 9.44 22.55 0.21 -2.48 16 24 C -0.08 -2.78 6.33 22.38 0.14 -2.64 16 25 Cl -0.06 -2.02 28.49 -2.72 -0.08 -2.10 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 1.04 7.26 -2.39 -0.02 1.02 16 29 H 0.08 1.49 6.02 -2.39 -0.01 1.47 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.17 3.87 5.64 -2.91 -0.02 3.86 16 34 H 0.14 5.21 6.75 -2.91 -0.02 5.20 16 35 H 0.16 5.97 8.06 -2.91 -0.02 5.95 16 36 H 0.16 6.21 8.06 -2.91 -0.02 6.19 16 37 H 0.29 12.86 8.29 -92.71 -0.77 12.10 16 38 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 Total: -1.00 -62.37 336.13 4.34 -58.03 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 1.10 Total: 27.17 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 5.28 Total: -22.40 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -3.15 Total: -87.50 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: -0.84 Total: -9.38 kcal Atomic # 14 Polarization: 34.15 SS G_CDS: 2.03 Total: 36.17 kcal Atomic # 17 Polarization: -2.02 SS G_CDS: -0.08 Total: -2.10 kcal Total: -62.37 4.34 -58.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241825079.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.775 kcal (2) G-P(sol) polarization free energy of solvation -62.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds