Wall clock time and date at job start Tue Mar 31 2020 11:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47285 * 2 1 4 4 O 1.42901 * 109.47104 * 120.00303 * 2 1 3 5 5 C 1.35766 * 116.99765 * 84.01577 * 4 2 1 6 6 C 1.39073 * 119.89617 * 2.81995 * 5 4 2 7 7 C 1.37665 * 120.13011 * 179.76391 * 6 5 4 8 8 C 1.39846 * 119.91154 * 0.46615 * 7 6 5 9 9 C 1.47591 * 120.10411 * 179.78981 * 8 7 6 10 10 N 1.33049 * 120.55122 * 128.94310 * 9 8 7 11 11 C 1.31906 * 120.03010 * 180.28242 * 10 9 8 12 12 C 1.39020 * 121.22351 * 359.69709 * 11 10 9 13 13 N 1.31515 * 121.14531 * 359.97438 * 12 11 10 14 14 C 1.34087 * 119.86038 * 0.02562 * 13 12 11 15 15 C 1.40726 * 120.58062 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00076 * 172.50037 * 15 14 13 17 17 C 1.40143 * 119.99784 * 352.50174 * 15 14 13 18 18 N 1.30707 * 120.00047 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99869 * 180.27653 * 17 15 14 20 20 H 1.48500 * 109.46957 * 179.72581 * 19 17 15 21 21 H 1.48502 * 109.46944 * 299.72108 * 19 17 15 22 22 H 1.48491 * 109.47025 * 59.72426 * 19 17 15 23 23 C 1.39942 * 119.79081 * 359.51374 * 8 7 6 24 24 Cl 1.73602 * 120.06375 * 180.27686 * 23 8 7 25 25 C 1.37874 * 119.86933 * 0.24797 * 23 8 7 26 26 H 1.09002 * 109.47122 * 59.99300 * 1 2 3 27 27 H 1.08996 * 109.47463 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47091 * 299.99589 * 1 2 3 29 29 H 1.09000 * 109.46607 * 240.00316 * 2 1 3 30 30 H 1.08997 * 109.46983 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47194 * 300.00155 * 3 2 1 32 32 H 1.09004 * 109.46721 * 60.00184 * 3 2 1 33 33 H 1.08003 * 119.93319 * 0.02562 * 6 5 4 34 34 H 1.07997 * 120.04308 * 180.23259 * 7 6 5 35 35 H 1.07999 * 119.38494 * 179.67518 * 11 10 9 36 36 H 1.08008 * 119.42955 * 179.97438 * 12 11 10 37 37 H 0.97007 * 119.99348 * 179.97438 * 18 17 15 38 38 H 1.07997 * 119.95420 * 179.97438 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0929 -2.0272 1.1047 6 6 1.7813 -2.6882 -0.0785 7 6 1.8720 -4.0601 -0.1482 8 6 2.2690 -4.7907 0.9762 9 6 2.3633 -6.2620 0.9076 10 7 3.4668 -6.8884 1.3078 11 6 3.5420 -8.2034 1.2368 12 6 2.4811 -8.9609 0.7537 13 7 1.3660 -8.3912 0.3517 14 6 1.2412 -7.0572 0.4043 15 6 0.0551 -6.4316 -0.0224 16 1 -0.0837 -5.3723 0.1353 17 6 -0.9461 -7.1834 -0.6521 18 7 -0.7783 -8.4656 -0.8426 19 14 -2.5173 -6.3516 -1.2256 20 1 -3.4059 -7.3571 -1.8618 21 1 -3.2103 -5.7456 -0.0604 22 1 -2.1850 -5.2912 -2.2104 23 6 2.5821 -4.1220 2.1650 24 17 3.0826 -5.0214 3.5629 25 6 2.4930 -2.7474 2.2235 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8932 -0.5138 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.4716 -2.1238 -0.9457 34 1 1.6333 -4.5717 -1.0689 35 1 4.4447 -8.7008 1.5595 36 1 2.5742 -10.0360 0.7078 37 1 -1.4715 -8.9859 -1.2782 38 1 2.7339 -2.2299 3.1403 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242086728.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:26 Heat of formation + Delta-G solvation = 12.671497 kcal Electronic energy + Delta-G solvation = -23810.283039 eV Core-core repulsion = 20257.529861 eV Total energy + Delta-G solvation = -3552.753178 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.04530 -38.78443 -37.30572 -35.63785 -34.19668 -33.33181 -32.16548 -30.95111 -30.31283 -28.29529 -27.36743 -26.10564 -23.58716 -22.74316 -22.00376 -21.21923 -20.19644 -18.17918 -17.69501 -16.22426 -16.04772 -15.58931 -15.43541 -14.92708 -14.69091 -14.29548 -14.09667 -13.59380 -13.32676 -13.03503 -12.85782 -12.74788 -12.48080 -12.36419 -12.32351 -12.03671 -11.60624 -11.46365 -11.37423 -11.26635 -11.12776 -10.80695 -10.54465 -10.51915 -10.21456 -10.11203 -9.85612 -9.56382 -9.16876 -8.37065 -8.10541 -7.55295 -7.26371 -6.62051 -4.78734 1.57506 1.71431 2.47102 2.67527 2.91616 2.92931 2.94745 3.19360 3.45443 3.72028 4.12638 4.53722 4.67411 4.81720 4.94405 5.19127 5.29714 5.38403 5.39681 5.44082 5.58908 5.61616 5.66226 5.79835 5.90890 5.97255 5.99468 6.07709 6.18926 6.30105 6.32298 6.55001 6.67028 6.81448 6.88177 6.92233 7.00257 7.20142 7.61660 7.67516 7.92374 8.27109 8.55647 9.21316 9.77195 9.96292 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010848 B = 0.005531 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.408145 B = 5061.545546 C = 7092.381344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.075 3.925 3 C -0.147 4.147 4 O -0.312 6.312 5 C 0.121 3.879 6 C -0.209 4.209 7 C -0.053 4.053 8 C 0.007 3.993 9 C -0.035 4.035 10 N -0.394 5.394 11 C -0.124 4.124 12 C 0.093 3.907 13 N -0.461 5.461 14 C 0.228 3.772 15 C -0.396 4.396 16 H 0.096 0.904 17 C 0.065 3.935 18 N -0.701 5.701 19 Si 0.910 3.090 20 H -0.274 1.274 21 H -0.260 1.260 22 H -0.260 1.260 23 C 0.011 3.989 24 Cl -0.058 7.058 25 C -0.152 4.152 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.129 0.871 34 H 0.138 0.862 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.281 0.719 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.409 12.646 -0.815 12.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.019 3.981 3 C -0.204 4.204 4 O -0.226 6.226 5 C 0.076 3.924 6 C -0.227 4.227 7 C -0.072 4.072 8 C 0.005 3.995 9 C -0.184 4.184 10 N -0.106 5.106 11 C -0.285 4.285 12 C -0.077 4.077 13 N -0.177 5.177 14 C 0.102 3.898 15 C -0.426 4.426 16 H 0.114 0.886 17 C -0.163 4.163 18 N -0.320 5.320 19 Si 0.733 3.267 20 H -0.198 1.198 21 H -0.184 1.184 22 H -0.184 1.184 23 C -0.017 4.017 24 Cl -0.029 7.029 25 C -0.171 4.171 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.147 0.853 34 H 0.156 0.844 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.092 0.908 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.390 12.414 -0.632 12.436 hybrid contribution -0.700 -0.048 -0.290 0.759 sum -0.310 12.366 -0.922 12.405 Atomic orbital electron populations 1.22370 0.95164 1.03496 1.02763 1.22403 0.94297 0.93399 0.88006 1.21836 1.02035 0.93753 1.02789 1.86035 1.81248 1.16372 1.38987 1.18673 0.97848 0.82165 0.93706 1.21158 1.08719 0.95424 0.97430 1.21097 0.95754 0.92213 0.98155 1.18130 0.98582 0.91716 0.91111 1.20972 0.93552 0.91028 1.12826 1.67789 1.23936 1.10061 1.08808 1.22370 1.00874 0.90500 1.14708 1.23391 0.91031 0.99834 0.93455 1.69558 1.20733 1.09644 1.17795 1.20311 0.91894 0.88291 0.89264 1.19684 0.97721 0.96698 1.28522 0.88640 1.26219 1.00305 0.94775 0.95037 1.70050 1.31903 1.06402 1.23643 0.86314 0.80296 0.80063 0.80064 1.19827 1.18426 1.18393 1.20704 1.01272 0.90642 0.89065 1.98340 1.89405 1.75267 1.39879 1.19928 1.07669 0.91345 0.98169 0.91255 0.91432 0.91601 0.90697 0.91731 0.90731 0.91617 0.85323 0.84385 0.85765 0.85542 0.90776 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 9.27 37.16 0.34 -1.48 16 2 C 0.08 0.82 2.86 -26.73 -0.08 0.74 16 3 C -0.15 -1.24 9.56 37.16 0.36 -0.89 16 4 O -0.31 -4.48 9.79 -19.01 -0.19 -4.67 16 5 C 0.12 1.97 6.57 -39.01 -0.26 1.72 16 6 C -0.21 -3.36 8.35 -39.48 -0.33 -3.68 16 7 C -0.05 -1.00 7.76 -39.19 -0.30 -1.31 16 8 C 0.01 0.15 5.15 -104.84 -0.54 -0.39 16 9 C -0.03 -0.86 5.94 -80.22 -0.48 -1.33 16 10 N -0.39 -9.61 9.21 -7.86 -0.07 -9.68 16 11 C -0.12 -2.86 11.17 -17.23 -0.19 -3.05 16 12 C 0.09 2.19 11.17 -17.40 -0.19 2.00 16 13 N -0.46 -12.24 8.11 -9.56 -0.08 -12.32 16 14 C 0.23 5.96 6.67 -82.64 -0.55 5.41 16 15 C -0.40 -9.79 7.97 -37.93 -0.30 -10.09 16 16 H 0.10 2.21 5.85 -52.49 -0.31 1.90 16 17 C 0.06 1.52 5.50 -17.32 -0.10 1.43 16 18 N -0.70 -17.34 11.53 55.56 0.64 -16.70 16 19 Si 0.91 17.16 29.56 -169.99 -5.03 12.13 16 20 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 21 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 22 H -0.26 -4.73 7.11 56.52 0.40 -4.32 16 23 C 0.01 0.22 6.34 -39.08 -0.25 -0.03 16 24 Cl -0.06 -1.15 27.11 -51.86 -1.41 -2.56 16 25 C -0.15 -2.65 9.75 -39.46 -0.38 -3.03 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.78 7.39 -51.93 -0.38 0.40 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.79 5.94 -51.93 -0.31 0.48 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.13 1.70 5.67 -52.48 -0.30 1.40 16 34 H 0.14 2.63 7.48 -52.49 -0.39 2.23 16 35 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 36 H 0.13 2.57 8.06 -52.48 -0.42 2.14 16 37 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 38 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 336.19 15.07 5.07 5.07 Total: -1.00 -28.78 336.19 -8.52 -37.30 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -4.21 Total: 5.40 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -3.25 Total: -13.98 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.49 Total: -38.70 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.19 Total: -4.67 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -1.41 Total: -2.56 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.78 -8.52 -37.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242086728.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.973 kcal (2) G-P(sol) polarization free energy of solvation -28.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds