Wall clock time and date at job start Tue Mar 31 2020 11:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47285 * 2 1 4 4 O 1.42901 * 109.47104 * 120.00303 * 2 1 3 5 5 C 1.35766 * 116.99765 * 84.01577 * 4 2 1 6 6 C 1.39073 * 119.89617 * 2.81995 * 5 4 2 7 7 C 1.37665 * 120.13011 * 179.76391 * 6 5 4 8 8 C 1.39846 * 119.91154 * 0.46615 * 7 6 5 9 9 C 1.47591 * 120.10411 * 179.78981 * 8 7 6 10 10 N 1.33049 * 120.55122 * 128.94310 * 9 8 7 11 11 C 1.31906 * 120.03010 * 180.28242 * 10 9 8 12 12 C 1.39020 * 121.22351 * 359.69709 * 11 10 9 13 13 N 1.31515 * 121.14531 * 359.97438 * 12 11 10 14 14 C 1.34087 * 119.86038 * 0.02562 * 13 12 11 15 15 C 1.40726 * 120.58062 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00076 * 172.50037 * 15 14 13 17 17 C 1.40143 * 119.99784 * 352.50174 * 15 14 13 18 18 N 1.30707 * 120.00047 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99869 * 180.27653 * 17 15 14 20 20 H 1.48500 * 109.46957 * 179.72581 * 19 17 15 21 21 H 1.48502 * 109.46944 * 299.72108 * 19 17 15 22 22 H 1.48491 * 109.47025 * 59.72426 * 19 17 15 23 23 C 1.39942 * 119.79081 * 359.51374 * 8 7 6 24 24 Cl 1.73602 * 120.06375 * 180.27686 * 23 8 7 25 25 C 1.37874 * 119.86933 * 0.24797 * 23 8 7 26 26 H 1.09002 * 109.47122 * 59.99300 * 1 2 3 27 27 H 1.08996 * 109.47463 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47091 * 299.99589 * 1 2 3 29 29 H 1.09000 * 109.46607 * 240.00316 * 2 1 3 30 30 H 1.08997 * 109.46983 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47194 * 300.00155 * 3 2 1 32 32 H 1.09004 * 109.46721 * 60.00184 * 3 2 1 33 33 H 1.08003 * 119.93319 * 0.02562 * 6 5 4 34 34 H 1.07997 * 120.04308 * 180.23259 * 7 6 5 35 35 H 1.07999 * 119.38494 * 179.67518 * 11 10 9 36 36 H 1.08008 * 119.42955 * 179.97438 * 12 11 10 37 37 H 0.97007 * 119.99348 * 179.97438 * 18 17 15 38 38 H 1.07997 * 119.95420 * 179.97438 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0929 -2.0272 1.1047 6 6 1.7813 -2.6882 -0.0785 7 6 1.8720 -4.0601 -0.1482 8 6 2.2690 -4.7907 0.9762 9 6 2.3633 -6.2620 0.9076 10 7 3.4668 -6.8884 1.3078 11 6 3.5420 -8.2034 1.2368 12 6 2.4811 -8.9609 0.7537 13 7 1.3660 -8.3912 0.3517 14 6 1.2412 -7.0572 0.4043 15 6 0.0551 -6.4316 -0.0224 16 1 -0.0837 -5.3723 0.1353 17 6 -0.9461 -7.1834 -0.6521 18 7 -0.7783 -8.4656 -0.8426 19 14 -2.5173 -6.3516 -1.2256 20 1 -3.4059 -7.3571 -1.8618 21 1 -3.2103 -5.7456 -0.0604 22 1 -2.1850 -5.2912 -2.2104 23 6 2.5821 -4.1220 2.1650 24 17 3.0826 -5.0214 3.5629 25 6 2.4930 -2.7474 2.2235 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8932 -0.5138 -0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.4716 -2.1238 -0.9457 34 1 1.6333 -4.5717 -1.0689 35 1 4.4447 -8.7008 1.5595 36 1 2.5742 -10.0360 0.7078 37 1 -1.4715 -8.9859 -1.2782 38 1 2.7339 -2.2299 3.1403 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242086728.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:25 Heat of formation + Delta-G solvation = -2.533020 kcal Electronic energy + Delta-G solvation = -23810.942356 eV Core-core repulsion = 20257.529861 eV Total energy + Delta-G solvation = -3553.412495 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.32494 -40.48113 -38.69185 -37.12952 -35.98128 -34.43358 -33.82663 -32.56225 -31.72806 -29.86622 -28.15081 -27.84493 -25.05553 -24.18293 -23.69602 -22.68051 -21.43752 -19.55293 -19.31978 -17.90798 -17.56674 -17.01088 -16.64127 -16.49382 -15.99493 -15.89057 -15.31061 -14.97984 -14.71829 -14.49803 -14.35752 -14.05397 -13.89829 -13.35954 -13.31725 -13.20083 -13.01565 -12.94790 -12.91445 -12.45634 -12.31885 -12.23167 -12.05197 -11.89301 -11.62594 -11.49134 -11.43595 -11.36247 -10.95619 -9.79637 -9.78594 -9.34484 -8.86192 -8.38451 -6.62928 0.07305 0.27268 0.74480 1.21411 1.24564 1.38630 1.51663 1.55985 2.15649 2.33511 2.66610 2.77843 3.71042 3.74239 3.80105 3.94032 4.01125 4.07162 4.18082 4.25783 4.28817 4.41448 4.55019 4.62794 4.75432 4.79577 4.86135 4.89349 4.93218 5.00562 5.08272 5.14199 5.21779 5.31189 5.33189 5.38161 5.53539 5.65344 5.84299 6.10785 6.45436 6.48709 6.72419 7.38285 7.93611 8.24341 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010848 B = 0.005531 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.408145 B = 5061.545546 C = 7092.381344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.062 3.938 3 C -0.143 4.143 4 O -0.316 6.316 5 C 0.138 3.862 6 C -0.196 4.196 7 C -0.056 4.056 8 C -0.030 4.030 9 C -0.037 4.037 10 N -0.411 5.411 11 C -0.132 4.132 12 C 0.079 3.921 13 N -0.496 5.496 14 C 0.196 3.804 15 C -0.414 4.414 16 H 0.103 0.897 17 C 0.024 3.976 18 N -0.738 5.738 19 Si 0.982 3.018 20 H -0.266 1.266 21 H -0.259 1.259 22 H -0.245 1.245 23 C 0.001 3.999 24 Cl -0.066 7.066 25 C -0.155 4.155 26 H 0.095 0.905 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.065 0.935 33 H 0.162 0.838 34 H 0.132 0.868 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.288 0.712 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.508 15.453 -1.767 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.007 3.993 3 C -0.200 4.200 4 O -0.231 6.231 5 C 0.092 3.908 6 C -0.214 4.214 7 C -0.076 4.076 8 C -0.033 4.033 9 C -0.186 4.186 10 N -0.122 5.122 11 C -0.291 4.291 12 C -0.089 4.089 13 N -0.213 5.213 14 C 0.070 3.930 15 C -0.444 4.444 16 H 0.121 0.879 17 C -0.201 4.201 18 N -0.359 5.359 19 Si 0.801 3.199 20 H -0.190 1.190 21 H -0.183 1.183 22 H -0.168 1.168 23 C -0.026 4.026 24 Cl -0.037 7.037 25 C -0.174 4.174 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.179 0.821 34 H 0.149 0.851 35 H 0.169 0.831 36 H 0.170 0.830 37 H 0.099 0.901 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.493 15.220 -1.577 15.310 hybrid contribution -0.350 -0.781 0.015 0.855 sum -0.842 14.440 -1.562 14.548 Atomic orbital electron populations 1.22379 0.94337 1.02836 1.04108 1.22825 0.95056 0.94476 0.86921 1.21867 1.01962 0.92083 1.04119 1.86068 1.80964 1.14983 1.41039 1.18704 0.95833 0.83237 0.93069 1.21395 1.07238 0.94251 0.98545 1.21083 0.95886 0.93372 0.97231 1.18204 1.01633 0.90591 0.92835 1.21359 0.92945 0.92582 1.11721 1.67862 1.24154 1.10654 1.09574 1.22818 1.01703 0.90440 1.14146 1.23822 0.90697 1.01204 0.93202 1.69512 1.22212 1.10345 1.19254 1.20778 0.93173 0.88682 0.90365 1.19987 0.98049 0.97281 1.29057 0.87874 1.27147 1.03339 0.95161 0.94461 1.70133 1.33352 1.07978 1.24387 0.85237 0.75688 0.79285 0.79708 1.19014 1.18308 1.16845 1.20792 1.01854 0.91517 0.88487 1.98326 1.89548 1.75726 1.40137 1.20095 1.07424 0.90446 0.99440 0.88661 0.93033 0.91635 0.89924 0.91907 0.88157 0.91561 0.82064 0.85050 0.83094 0.82985 0.90127 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 9.27 71.98 0.67 -2.32 16 2 C 0.06 1.14 2.86 30.59 0.09 1.23 16 3 C -0.14 -1.90 9.56 71.98 0.69 -1.21 16 4 O -0.32 -8.17 9.79 -90.93 -0.89 -9.06 16 5 C 0.14 4.19 6.57 22.64 0.15 4.33 16 6 C -0.20 -5.89 8.35 22.33 0.19 -5.70 16 7 C -0.06 -2.12 7.76 22.52 0.17 -1.95 16 8 C -0.03 -1.32 5.15 -20.01 -0.10 -1.43 16 9 C -0.04 -1.85 5.94 43.57 0.26 -1.59 16 10 N -0.41 -20.46 9.21 -178.78 -1.65 -22.10 16 11 C -0.13 -6.15 11.17 84.87 0.95 -5.20 16 12 C 0.08 3.83 11.17 84.93 0.95 4.78 16 13 N -0.50 -27.21 8.11 -184.15 -1.49 -28.71 16 14 C 0.20 10.56 6.67 41.54 0.28 10.84 16 15 C -0.41 -20.85 7.97 23.34 0.19 -20.66 16 16 H 0.10 4.84 5.85 -2.91 -0.02 4.82 16 17 C 0.02 1.12 5.50 85.32 0.47 1.58 16 18 N -0.74 -37.28 11.53 21.86 0.25 -37.02 16 19 Si 0.98 34.59 29.56 68.60 2.03 36.62 16 20 H -0.27 -8.94 7.11 99.48 0.71 -8.23 16 21 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 22 H -0.25 -7.99 7.11 99.48 0.71 -7.28 16 23 C 0.00 0.05 6.34 22.60 0.14 0.20 16 24 Cl -0.07 -2.66 27.11 -2.72 -0.07 -2.73 16 25 C -0.15 -5.22 9.75 22.35 0.22 -5.00 16 26 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.05 1.03 7.39 -2.39 -0.02 1.02 16 28 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.08 1.40 5.94 -2.39 -0.01 1.39 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.16 3.71 5.67 -2.91 -0.02 3.70 16 34 H 0.13 5.04 7.48 -2.91 -0.02 5.02 16 35 H 0.15 6.02 8.06 -2.91 -0.02 5.99 16 36 H 0.15 6.25 8.06 -2.91 -0.02 6.23 16 37 H 0.29 13.03 8.29 -92.70 -0.77 12.26 16 38 H 0.15 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -63.98 336.19 4.57 -59.41 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 1.10 Total: 25.70 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 5.30 Total: -22.10 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -2.89 Total: -87.83 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.89 Total: -9.06 kcal Atomic # 14 Polarization: 34.59 SS G_CDS: 2.03 Total: 36.62 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -0.07 Total: -2.73 kcal Total: -63.98 4.57 -59.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242086728.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.873 kcal (2) G-P(sol) polarization free energy of solvation -63.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds