Wall clock time and date at job start Tue Mar 31 2020 12:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35886 * 116.99792 * 2 1 4 4 C 1.39555 * 119.76154 * 0.02562 * 3 2 1 5 5 C 1.37819 * 120.63379 * 179.70114 * 4 3 2 6 6 C 1.39341 * 120.15297 * 0.27243 * 5 4 3 7 7 C 1.47592 * 120.23370 * 180.02562 * 6 5 4 8 8 C 1.39876 * 120.08400 * 65.00334 * 7 6 5 9 9 C 1.37584 * 119.94998 * 179.97438 * 8 7 6 10 10 C 1.39347 * 120.12822 * 359.97438 * 9 8 7 11 11 S 1.76209 * 119.91385 * 180.02562 * 10 9 8 12 12 C 1.81398 * 102.99803 * 180.02562 * 11 10 9 13 13 C 1.39185 * 120.17303 * 0.02562 * 10 9 8 14 14 C 1.37900 * 120.04058 * 359.78215 * 13 10 9 15 15 F 1.35108 * 120.05882 * 180.26053 * 14 13 10 16 16 C 1.41995 * 119.53097 * 0.02562 * 6 5 4 17 17 C 1.40803 * 120.31505 * 180.02562 * 16 6 5 18 18 H 1.08001 * 119.99975 * 25.34824 * 17 16 6 19 19 C 1.39965 * 120.00340 * 205.35307 * 17 16 6 20 20 N 1.30835 * 119.99917 * 15.51660 * 19 17 16 21 21 Si 1.86805 * 120.00049 * 195.51901 * 19 17 16 22 22 H 1.48501 * 109.46906 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47259 * 119.99729 * 21 19 17 24 24 H 1.48504 * 109.46576 * 240.00109 * 21 19 17 25 25 C 1.37840 * 119.76361 * 180.26027 * 3 2 1 26 26 H 1.09003 * 109.47177 * 299.99592 * 1 2 3 27 27 H 1.09001 * 109.47381 * 59.99551 * 1 2 3 28 28 H 1.09002 * 109.46969 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.68323 * 359.97218 * 4 3 2 30 30 H 1.08005 * 119.91907 * 180.25393 * 5 4 3 31 31 H 1.08000 * 120.02129 * 359.97438 * 8 7 6 32 32 H 1.08005 * 119.92987 * 179.97438 * 9 8 7 33 33 H 1.09003 * 109.46476 * 179.97438 * 12 11 10 34 34 H 1.08995 * 109.47376 * 299.99711 * 12 11 10 35 35 H 1.09005 * 109.47139 * 60.00205 * 12 11 10 36 36 H 1.07994 * 119.97778 * 180.02562 * 13 10 9 37 37 H 0.96999 * 120.00073 * 179.97438 * 20 19 17 38 38 H 1.07996 * 120.08300 * 0.04262 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2809 2.3780 0.0005 5 6 1.8878 3.6154 0.0067 6 6 3.2777 3.7132 0.0068 7 6 3.9295 5.0374 0.0140 8 6 3.7806 5.8862 1.1158 9 6 4.3898 7.1198 1.1198 10 6 5.1555 7.5253 0.0285 11 16 5.9338 9.1061 0.0399 12 6 6.7847 9.1536 -1.5615 13 6 5.3072 6.6849 -1.0706 14 6 4.7029 5.4454 -1.0804 15 9 4.8542 4.6272 -2.1449 16 6 4.0627 2.5300 -0.0001 17 6 5.4685 2.6096 0.0004 18 1 5.9597 3.4818 0.4060 19 6 6.2292 1.5587 -0.5247 20 7 5.6614 0.6540 -1.2803 21 14 8.0553 1.4477 -0.1467 22 1 8.4506 2.5846 0.7231 23 1 8.3395 0.1680 0.5508 24 1 8.8272 1.5029 -1.4141 25 6 3.4227 1.2773 -0.0054 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2030 2.3110 0.0005 30 1 1.2845 4.5112 0.0112 31 1 3.1879 5.5734 1.9627 32 1 4.2743 7.7751 1.9706 33 1 7.3093 10.1033 -1.6661 34 1 7.5014 8.3342 -1.6165 35 1 6.0543 9.0520 -2.3642 36 1 5.9016 7.0022 -1.9146 37 1 6.1887 -0.0741 -1.6445 38 1 4.0084 0.3700 -0.0104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242815075.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:17 Heat of formation + Delta-G solvation = -43.235644 kcal Electronic energy + Delta-G solvation = -23835.894472 eV Core-core repulsion = 20262.840723 eV Total energy + Delta-G solvation = -3573.053749 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.96446 -38.92808 -38.21041 -36.26387 -33.66046 -31.56680 -30.42900 -29.76478 -28.82343 -28.18797 -26.28153 -25.25783 -22.78700 -22.04053 -21.00409 -19.91562 -17.80704 -17.69194 -16.20647 -15.96572 -15.79451 -15.32892 -15.21194 -14.84403 -14.78293 -14.58484 -14.28176 -13.75347 -13.66683 -13.28534 -12.96931 -12.83908 -12.47349 -12.28003 -12.11477 -11.93222 -11.76502 -11.46551 -11.25371 -11.11907 -11.09437 -10.74974 -10.52953 -10.24960 -10.03712 -9.83693 -9.68779 -9.23212 -9.02025 -8.34026 -7.56207 -7.25310 -6.95686 -6.67499 -4.49745 1.47829 1.62439 1.70520 2.46437 2.69024 2.87453 3.03568 3.09208 3.15623 3.86813 4.02800 4.28333 4.53171 4.93912 5.01918 5.02896 5.12302 5.35930 5.53689 5.57170 5.60620 5.66486 5.71509 5.80899 5.88801 6.01822 6.08187 6.29551 6.44323 6.55967 6.68865 6.77566 6.89046 6.98897 7.18526 7.35194 7.37189 7.63091 7.72563 7.91216 7.96952 8.29542 8.68255 8.76265 8.84505 10.06945 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.012299 B = 0.004940 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.010379 B = 5667.006742 C = 7322.289274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.329 6.329 3 C 0.135 3.865 4 C -0.318 4.318 5 C -0.034 4.034 6 C -0.219 4.219 7 C -0.004 4.004 8 C -0.083 4.083 9 C -0.113 4.113 10 C -0.082 4.082 11 S -0.129 6.129 12 C -0.143 4.143 13 C -0.176 4.176 14 C 0.133 3.867 15 F -0.121 7.121 16 C 0.161 3.839 17 C -0.439 4.439 18 H 0.080 0.920 19 C 0.078 3.922 20 N -0.775 5.775 21 Si 0.904 3.096 22 H -0.258 1.258 23 H -0.269 1.269 24 H -0.272 1.272 25 C -0.193 4.193 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.132 0.868 32 H 0.125 0.875 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.283 0.717 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.992 9.110 1.003 9.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.243 6.243 3 C 0.091 3.909 4 C -0.338 4.338 5 C -0.053 4.053 6 C -0.220 4.220 7 C -0.007 4.007 8 C -0.103 4.103 9 C -0.136 4.136 10 C -0.194 4.194 11 S 0.111 5.889 12 C -0.311 4.311 13 C -0.200 4.200 14 C 0.112 3.888 15 F -0.100 7.100 16 C 0.158 3.842 17 C -0.468 4.468 18 H 0.098 0.902 19 C -0.142 4.142 20 N -0.398 5.398 21 Si 0.728 3.272 22 H -0.181 1.181 23 H -0.194 1.194 24 H -0.198 1.198 25 C -0.213 4.213 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.123 0.877 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.144 0.856 37 H 0.094 0.906 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.772 9.624 1.587 9.784 hybrid contribution 0.600 -1.143 -1.200 1.762 sum -0.172 8.481 0.387 8.492 Atomic orbital electron populations 1.22763 0.80748 1.01882 1.00531 1.86011 1.19530 1.29076 1.89721 1.19014 0.92462 0.82492 0.96958 1.20321 0.97347 0.92414 1.23708 1.20280 0.92939 0.95353 0.96716 1.18308 0.92168 0.90330 1.21220 1.18917 0.95558 0.94519 0.91704 1.21158 0.99128 0.92611 0.97384 1.20568 0.98882 0.96987 0.97153 1.21294 1.03283 0.97235 0.97585 1.85178 1.60922 1.18033 1.24767 1.23634 1.03355 1.06493 0.97658 1.20908 1.05011 0.94571 0.99494 1.17720 0.98143 0.87593 0.85322 1.91542 1.93637 1.71618 1.53167 1.17167 0.92611 0.88784 0.85638 1.19480 0.91017 1.02697 1.33576 0.90161 1.25953 1.01375 0.94314 0.92579 1.69839 1.38493 1.10396 1.21090 0.86304 0.81838 0.79624 0.79427 1.18134 1.19407 1.19762 1.20548 0.89389 0.99157 1.12185 0.93676 0.93647 0.89907 0.88492 0.88854 0.85052 0.85747 0.87748 0.89701 0.89804 0.85563 0.90576 0.85267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.80 101.05 0.99 1.58 16 2 O -0.33 -7.20 10.48 -19.38 -0.20 -7.40 16 3 C 0.13 3.24 6.67 -39.24 -0.26 2.98 16 4 C -0.32 -7.01 9.02 -39.24 -0.35 -7.37 16 5 C -0.03 -0.76 9.71 -39.32 -0.38 -1.14 16 6 C -0.22 -5.15 5.06 -104.23 -0.53 -5.68 16 7 C 0.00 -0.09 4.39 -104.78 -0.46 -0.54 16 8 C -0.08 -1.47 9.73 -39.21 -0.38 -1.85 16 9 C -0.11 -1.79 9.77 -39.41 -0.39 -2.17 16 10 C -0.08 -1.31 6.13 -38.82 -0.24 -1.55 16 11 S -0.13 -1.69 22.56 -107.50 -2.43 -4.11 16 12 C -0.14 -1.43 9.14 101.05 0.92 -0.51 16 13 C -0.18 -3.06 9.32 -39.35 -0.37 -3.43 16 14 C 0.13 2.77 6.47 -39.01 -0.25 2.52 16 15 F -0.12 -2.83 16.11 2.25 0.04 -2.79 16 16 C 0.16 4.19 5.46 -106.57 -0.58 3.61 16 17 C -0.44 -11.34 7.46 -37.97 -0.28 -11.62 16 18 H 0.08 2.06 7.07 -52.49 -0.37 1.68 16 19 C 0.08 1.94 5.18 -17.33 -0.09 1.85 16 20 N -0.77 -19.87 10.87 55.55 0.60 -19.26 16 21 Si 0.90 18.65 29.59 -169.99 -5.03 13.62 16 22 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 C -0.19 -5.07 8.60 -38.81 -0.33 -5.40 16 26 H 0.04 0.67 7.64 -51.93 -0.40 0.27 16 27 H 0.04 0.69 7.65 -51.93 -0.40 0.30 16 28 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.10 1.87 6.25 -52.49 -0.33 1.54 16 30 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 31 H 0.13 2.12 8.06 -52.49 -0.42 1.69 16 32 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.10 0.81 8.14 -51.92 -0.42 0.38 16 34 H 0.08 0.86 7.74 -51.93 -0.40 0.46 16 35 H 0.08 0.81 7.74 -51.92 -0.40 0.41 16 36 H 0.13 1.92 5.85 -52.49 -0.31 1.62 16 37 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 38 H 0.13 3.56 6.13 -52.49 -0.32 3.24 16 LS Contribution 337.68 15.07 5.09 5.09 Total: -1.00 -28.47 337.68 -9.08 -37.55 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -4.17 Total: 6.05 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -2.98 Total: -28.74 kcal Atomic # 7 Polarization: -19.87 SS G_CDS: 0.60 Total: -19.26 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.20 Total: -7.40 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.79 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.43 Total: -4.11 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.47 -9.08 -37.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242815075.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.684 kcal (2) G-P(sol) polarization free energy of solvation -28.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds