Wall clock time and date at job start Tue Mar 31 2020 12:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35886 * 116.99792 * 2 1 4 4 C 1.39555 * 119.76154 * 0.02562 * 3 2 1 5 5 C 1.37819 * 120.63379 * 179.70114 * 4 3 2 6 6 C 1.39341 * 120.15297 * 0.27243 * 5 4 3 7 7 C 1.47592 * 120.23370 * 180.02562 * 6 5 4 8 8 C 1.39876 * 120.08400 * 65.00334 * 7 6 5 9 9 C 1.37584 * 119.94998 * 179.97438 * 8 7 6 10 10 C 1.39347 * 120.12822 * 359.97438 * 9 8 7 11 11 S 1.76209 * 119.91385 * 180.02562 * 10 9 8 12 12 C 1.81398 * 102.99803 * 180.02562 * 11 10 9 13 13 C 1.39185 * 120.17303 * 0.02562 * 10 9 8 14 14 C 1.37900 * 120.04058 * 359.78215 * 13 10 9 15 15 F 1.35108 * 120.05882 * 180.26053 * 14 13 10 16 16 C 1.41995 * 119.53097 * 0.02562 * 6 5 4 17 17 C 1.40803 * 120.31505 * 180.02562 * 16 6 5 18 18 H 1.08001 * 119.99975 * 25.34824 * 17 16 6 19 19 C 1.39965 * 120.00340 * 205.35307 * 17 16 6 20 20 N 1.30835 * 119.99917 * 15.51660 * 19 17 16 21 21 Si 1.86805 * 120.00049 * 195.51901 * 19 17 16 22 22 H 1.48501 * 109.46906 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47259 * 119.99729 * 21 19 17 24 24 H 1.48504 * 109.46576 * 240.00109 * 21 19 17 25 25 C 1.37840 * 119.76361 * 180.26027 * 3 2 1 26 26 H 1.09003 * 109.47177 * 299.99592 * 1 2 3 27 27 H 1.09001 * 109.47381 * 59.99551 * 1 2 3 28 28 H 1.09002 * 109.46969 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.68323 * 359.97218 * 4 3 2 30 30 H 1.08005 * 119.91907 * 180.25393 * 5 4 3 31 31 H 1.08000 * 120.02129 * 359.97438 * 8 7 6 32 32 H 1.08005 * 119.92987 * 179.97438 * 9 8 7 33 33 H 1.09003 * 109.46476 * 179.97438 * 12 11 10 34 34 H 1.08995 * 109.47376 * 299.99711 * 12 11 10 35 35 H 1.09005 * 109.47139 * 60.00205 * 12 11 10 36 36 H 1.07994 * 119.97778 * 180.02562 * 13 10 9 37 37 H 0.96999 * 120.00073 * 179.97438 * 20 19 17 38 38 H 1.07996 * 120.08300 * 0.04262 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2809 2.3780 0.0005 5 6 1.8878 3.6154 0.0067 6 6 3.2777 3.7132 0.0068 7 6 3.9295 5.0374 0.0140 8 6 3.7806 5.8862 1.1158 9 6 4.3898 7.1198 1.1198 10 6 5.1555 7.5253 0.0285 11 16 5.9338 9.1061 0.0399 12 6 6.7847 9.1536 -1.5615 13 6 5.3072 6.6849 -1.0706 14 6 4.7029 5.4454 -1.0804 15 9 4.8542 4.6272 -2.1449 16 6 4.0627 2.5300 -0.0001 17 6 5.4685 2.6096 0.0004 18 1 5.9597 3.4818 0.4060 19 6 6.2292 1.5587 -0.5247 20 7 5.6614 0.6540 -1.2803 21 14 8.0553 1.4477 -0.1467 22 1 8.4506 2.5846 0.7231 23 1 8.3395 0.1680 0.5508 24 1 8.8272 1.5029 -1.4141 25 6 3.4227 1.2773 -0.0054 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2030 2.3110 0.0005 30 1 1.2845 4.5112 0.0112 31 1 3.1879 5.5734 1.9627 32 1 4.2743 7.7751 1.9706 33 1 7.3093 10.1033 -1.6661 34 1 7.5014 8.3342 -1.6165 35 1 6.0543 9.0520 -2.3642 36 1 5.9016 7.0022 -1.9146 37 1 6.1887 -0.0741 -1.6445 38 1 4.0084 0.3700 -0.0104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242815075.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:16 Heat of formation + Delta-G solvation = -56.688856 kcal Electronic energy + Delta-G solvation = -23836.477847 eV Core-core repulsion = 20262.840723 eV Total energy + Delta-G solvation = -3573.637124 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.61980 -40.59725 -39.67683 -37.94083 -35.47571 -33.05577 -31.83913 -31.51860 -29.94411 -29.54547 -27.77236 -27.03424 -24.29530 -23.47181 -22.77733 -21.56836 -19.55358 -19.06184 -18.01283 -17.40741 -17.27898 -16.89545 -16.62256 -16.47306 -16.35252 -16.18493 -15.59981 -14.94249 -14.92452 -14.62493 -14.53127 -14.33735 -14.09098 -13.68435 -13.56904 -13.28158 -13.17018 -13.08148 -12.85754 -12.72361 -12.59252 -12.33670 -12.04773 -11.72153 -11.59837 -11.40265 -11.26294 -11.03786 -10.40065 -9.74764 -9.41991 -8.83404 -8.62425 -8.18479 -6.40151 0.06675 0.30532 0.57925 0.92920 1.07352 1.32253 1.43657 1.46161 1.47400 2.15260 2.59238 2.68697 2.77002 3.53346 3.61712 3.85310 4.08643 4.13660 4.25349 4.29103 4.31809 4.43176 4.46585 4.50361 4.55327 4.65644 4.74082 4.86563 5.03494 5.07414 5.09596 5.16132 5.26559 5.31463 5.50213 5.53315 5.81329 5.88951 5.97988 6.08901 6.14382 6.44206 6.86855 6.90109 7.02816 8.27346 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.012299 B = 0.004940 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.010379 B = 5667.006742 C = 7322.289274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.130 3.870 4 C -0.314 4.314 5 C -0.041 4.041 6 C -0.221 4.221 7 C -0.036 4.036 8 C -0.079 4.079 9 C -0.106 4.106 10 C -0.081 4.081 11 S -0.114 6.114 12 C -0.144 4.144 13 C -0.174 4.174 14 C 0.103 3.897 15 F -0.148 7.148 16 C 0.135 3.865 17 C -0.463 4.463 18 H 0.072 0.928 19 C 0.037 3.963 20 N -0.813 5.813 21 Si 0.970 3.030 22 H -0.257 1.257 23 H -0.260 1.260 24 H -0.265 1.265 25 C -0.230 4.230 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.116 0.884 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.145 0.855 32 H 0.156 0.844 33 H 0.133 0.867 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.145 0.855 37 H 0.288 0.712 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.156 11.671 1.697 11.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.266 6.266 3 C 0.085 3.915 4 C -0.334 4.334 5 C -0.059 4.059 6 C -0.223 4.223 7 C -0.039 4.039 8 C -0.099 4.099 9 C -0.129 4.129 10 C -0.194 4.194 11 S 0.128 5.872 12 C -0.312 4.312 13 C -0.199 4.199 14 C 0.082 3.918 15 F -0.126 7.126 16 C 0.132 3.868 17 C -0.491 4.491 18 H 0.090 0.910 19 C -0.179 4.179 20 N -0.438 5.438 21 Si 0.790 3.210 22 H -0.180 1.180 23 H -0.185 1.185 24 H -0.190 1.190 25 C -0.250 4.250 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.134 0.866 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.163 0.837 32 H 0.174 0.826 33 H 0.151 0.849 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.163 0.837 37 H 0.099 0.901 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.957 12.198 2.286 12.448 hybrid contribution 0.521 -1.771 -1.412 2.324 sum -0.436 10.427 0.875 10.473 Atomic orbital electron populations 1.23155 0.77550 1.04551 1.01556 1.85975 1.22852 1.28317 1.89461 1.19128 0.92139 0.83990 0.96227 1.20669 0.98863 0.91655 1.22187 1.20673 0.92784 0.96559 0.95858 1.18650 0.92988 0.91011 1.19645 1.18953 0.97340 0.94274 0.93342 1.21308 0.99147 0.92827 0.96631 1.20924 0.97550 0.96465 0.97954 1.21703 1.02305 0.98647 0.96697 1.85175 1.60361 1.14863 1.26847 1.23810 1.03411 1.08132 0.95893 1.21084 1.04613 0.93438 1.00723 1.18068 0.99842 0.88768 0.85134 1.91466 1.94069 1.72709 1.54400 1.17502 0.93336 0.89692 0.86296 1.19523 0.91463 1.03151 1.34983 0.91007 1.26747 1.05558 0.93670 0.91953 1.69912 1.40210 1.11286 1.22352 0.85336 0.76515 0.79749 0.79365 1.18005 1.18462 1.19018 1.20493 0.90691 0.98591 1.15230 0.92217 0.92842 0.86629 0.85293 0.85870 0.83689 0.82599 0.84869 0.89666 0.89211 0.83727 0.90111 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.80 113.37 1.11 1.91 16 2 O -0.35 -15.52 10.48 -92.27 -0.97 -16.49 16 3 C 0.13 6.39 6.67 22.49 0.15 6.54 16 4 C -0.31 -13.67 9.02 22.49 0.20 -13.47 16 5 C -0.04 -1.77 9.71 22.44 0.22 -1.55 16 6 C -0.22 -10.71 5.06 -19.61 -0.10 -10.81 16 7 C -0.04 -1.53 4.39 -19.96 -0.09 -1.62 16 8 C -0.08 -2.73 9.73 22.51 0.22 -2.51 16 9 C -0.11 -3.09 9.77 22.38 0.22 -2.88 16 10 C -0.08 -2.41 6.13 22.76 0.14 -2.27 16 11 S -0.11 -2.57 22.56 -56.49 -1.27 -3.85 16 12 C -0.14 -2.39 9.14 113.37 1.04 -1.36 16 13 C -0.17 -5.91 9.32 22.42 0.21 -5.70 16 14 C 0.10 4.35 6.47 22.64 0.15 4.50 16 15 F -0.15 -7.23 16.11 44.97 0.72 -6.51 16 16 C 0.13 7.37 5.46 -21.13 -0.12 7.25 16 17 C -0.46 -25.18 7.46 23.32 0.17 -25.01 16 18 H 0.07 3.88 7.07 -2.91 -0.02 3.86 16 19 C 0.04 1.93 5.18 85.26 0.44 2.37 16 20 N -0.81 -44.21 10.87 21.83 0.24 -43.97 16 21 Si 0.97 39.58 29.59 68.60 2.03 41.61 16 22 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 24 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 25 C -0.23 -12.79 8.60 22.77 0.20 -12.59 16 26 H 0.06 1.63 7.64 -2.39 -0.02 1.61 16 27 H 0.05 1.53 7.65 -2.39 -0.02 1.51 16 28 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.13 4.66 6.25 -2.91 -0.02 4.65 16 30 H 0.12 4.54 8.06 -2.91 -0.02 4.51 16 31 H 0.15 4.45 8.06 -2.91 -0.02 4.43 16 32 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 33 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 1.47 7.74 -2.39 -0.02 1.45 16 35 H 0.09 1.44 7.74 -2.39 -0.02 1.42 16 36 H 0.15 4.21 5.85 -2.91 -0.02 4.19 16 37 H 0.29 14.19 8.30 -92.71 -0.77 13.42 16 38 H 0.10 6.15 6.13 -2.91 -0.02 6.13 16 Total: -1.00 -66.21 337.68 6.01 -60.20 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 1.10 Total: 26.20 kcal Atomic # 6 Polarization: -61.36 SS G_CDS: 4.16 Total: -57.19 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.24 Total: -43.97 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.97 Total: -16.49 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.72 Total: -6.51 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Atomic # 16 Polarization: -2.57 SS G_CDS: -1.27 Total: -3.85 kcal Total: -66.21 6.01 -60.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242815075.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.514 kcal (2) G-P(sol) polarization free energy of solvation -66.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds