Wall clock time and date at job start Tue Mar 31 2020 12:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76202 * 103.00067 * 2 1 4 4 C 1.38992 * 119.96280 * 0.02565 * 3 2 1 5 5 C 1.37883 * 120.06694 * 179.97438 * 4 3 2 6 6 C 1.39407 * 119.99503 * 0.02562 * 5 4 3 7 7 C 1.48329 * 120.04016 * 179.97438 * 6 5 4 8 8 C 1.39398 * 120.06314 * 359.72183 * 7 6 5 9 9 C 1.37921 * 119.92589 * 179.76792 * 8 7 6 10 10 C 1.38816 * 120.06990 * 0.53264 * 9 8 7 11 11 O 1.35892 * 119.92909 * 179.72459 * 10 9 8 12 12 C 1.42899 * 117.00436 * 359.97168 * 11 10 9 13 13 C 1.50698 * 109.47148 * 180.02562 * 12 11 10 14 14 H 1.07992 * 120.00443 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99571 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00163 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99820 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46874 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47130 * 119.99522 * 17 15 13 20 20 H 1.48499 * 109.46873 * 239.99804 * 17 15 13 21 21 C 1.38820 * 120.13752 * 359.69627 * 10 9 8 22 22 C 1.37914 * 120.07146 * 0.04922 * 21 10 9 23 23 C 1.39436 * 119.92949 * 359.72398 * 6 5 4 24 24 C 1.38023 * 119.92586 * 0.52530 * 23 6 5 25 25 F 1.35104 * 119.99441 * 179.76907 * 24 23 6 26 26 H 1.09001 * 109.46990 * 299.99344 * 1 2 3 27 27 H 1.09003 * 109.47311 * 59.99490 * 1 2 3 28 28 H 1.09005 * 109.47187 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.96731 * 359.97438 * 4 3 2 30 30 H 1.07998 * 120.00258 * 180.02562 * 5 4 3 31 31 H 1.08004 * 120.03753 * 0.02562 * 8 7 6 32 32 H 1.08001 * 119.95962 * 180.25422 * 9 8 7 33 33 H 1.09000 * 109.47276 * 300.00846 * 12 11 10 34 34 H 1.08998 * 109.46570 * 60.00269 * 12 11 10 35 35 H 0.96995 * 119.99975 * 180.02562 * 16 15 13 36 36 H 1.08000 * 119.96782 * 180.02562 * 21 10 9 37 37 H 1.07997 * 120.03767 * 179.97438 * 22 21 10 38 38 H 1.07995 * 120.04258 * 180.27249 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1932 2.6641 0.0005 5 6 1.5010 4.0082 0.0011 6 6 2.8334 4.4180 0.0005 7 6 3.1656 5.8637 0.0005 8 6 2.1462 6.8144 -0.0048 9 6 2.4583 8.1579 0.0001 10 6 3.7859 8.5635 -0.0009 11 8 4.0901 9.8880 -0.0018 12 6 2.9945 10.8054 -0.0022 13 6 3.5215 12.2172 -0.0038 14 1 4.5865 12.3961 -0.0048 15 6 2.6438 13.2806 -0.0040 16 7 1.3468 13.0628 -0.0033 17 14 3.2970 15.0307 -0.0067 18 1 4.7818 15.0049 -0.0077 19 1 2.8129 15.7379 -1.2194 20 1 2.8155 15.7406 1.2056 21 6 4.8033 7.6191 -0.0004 22 6 4.4978 6.2742 0.0000 23 6 3.8537 3.4676 0.0053 24 6 3.5421 2.1230 -0.0005 25 9 4.5296 1.2009 -0.0006 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 0.1608 2.3471 0.0005 30 1 0.7098 4.7433 0.0019 31 1 1.1132 6.4994 -0.0085 32 1 1.6689 8.8950 0.0001 33 1 2.3858 10.6440 -0.8920 34 1 2.3862 10.6452 0.8879 35 1 0.7294 13.8109 -0.0037 36 1 5.8352 7.9378 -0.0008 37 1 5.2897 5.5400 0.0000 38 1 4.8865 3.7831 0.0093 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242975670.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:46 Heat of formation + Delta-G solvation = -40.289516 kcal Electronic energy + Delta-G solvation = -22156.205734 eV Core-core repulsion = 18583.279739 eV Total energy + Delta-G solvation = -3572.925995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.08224 -39.95902 -38.83062 -36.69886 -33.08257 -32.32976 -31.44751 -30.45532 -29.38422 -28.58695 -27.35089 -24.05070 -23.54535 -22.89842 -21.38666 -20.74241 -18.49750 -17.50518 -17.23578 -16.81002 -16.35340 -15.86163 -15.70458 -15.03140 -14.95011 -14.73510 -14.67172 -14.43615 -14.12358 -14.00507 -13.44855 -13.35489 -13.08830 -13.05866 -12.67991 -12.41818 -12.14888 -12.11183 -11.58342 -11.33212 -11.14787 -11.01264 -10.62554 -10.59502 -10.55872 -10.21487 -9.80980 -9.34852 -9.12452 -8.79218 -8.65578 -8.00531 -7.19711 -6.31955 -4.35863 0.48455 0.94423 1.12543 1.62803 1.90353 2.01566 3.18708 3.25637 3.31322 3.32867 3.91614 4.05953 4.17248 4.36619 4.44278 4.55837 4.64014 4.64731 4.81630 4.93385 5.05650 5.10508 5.13352 5.23116 5.40085 5.56842 5.62670 5.64415 5.78566 5.79608 5.97956 6.18088 6.26708 6.45908 6.60084 6.65442 6.77487 6.87001 7.04379 7.09468 7.60907 7.86682 8.34408 8.76253 9.29786 10.79289 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.035465 B = 0.002112 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.310382 B =13251.722735 C =14020.584228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.104 6.104 3 C -0.140 4.140 4 C -0.098 4.098 5 C -0.114 4.114 6 C 0.015 3.985 7 C -0.126 4.126 8 C -0.057 4.057 9 C -0.213 4.213 10 C 0.168 3.832 11 O -0.313 6.313 12 C 0.191 3.809 13 C -0.525 4.525 14 H 0.072 0.928 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.914 3.086 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.169 4.169 22 C -0.063 4.063 23 C -0.142 4.142 24 C 0.124 3.876 25 F -0.131 7.131 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.109 0.891 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.023 0.977 34 H 0.024 0.976 35 H 0.267 0.733 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.044 -23.742 0.008 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.137 5.863 3 C -0.254 4.254 4 C -0.122 4.122 5 C -0.134 4.134 6 C 0.012 3.988 7 C -0.126 4.126 8 C -0.075 4.075 9 C -0.232 4.232 10 C 0.119 3.881 11 O -0.225 6.225 12 C 0.118 3.882 13 C -0.563 4.563 14 H 0.090 0.910 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.740 3.260 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.188 4.188 22 C -0.081 4.081 23 C -0.162 4.162 24 C 0.099 3.901 25 F -0.109 7.109 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.128 0.872 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.141 0.859 32 H 0.156 0.844 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.362 -24.631 0.008 24.669 hybrid contribution -0.817 1.925 -0.003 2.091 sum -2.179 -22.707 0.005 22.811 Atomic orbital electron populations 1.23717 0.94802 1.07244 1.05846 1.85633 1.06206 1.01770 1.92653 1.21752 0.94934 0.98141 1.10527 1.20929 0.97869 0.92511 1.00861 1.21201 0.96200 0.95268 1.00692 1.18622 0.92245 0.92148 0.95754 1.18351 0.93667 0.90440 1.10133 1.20953 0.98362 0.91948 0.96258 1.21433 0.96452 0.96847 1.08452 1.19448 0.92705 0.85597 0.90337 1.86144 1.39527 1.11644 1.85158 1.20718 0.83952 0.86467 0.97037 1.21006 0.94469 0.88528 1.52305 0.91014 1.24945 0.94670 1.00014 0.94591 1.69949 1.01470 1.32287 1.49504 0.86181 0.79293 0.82668 0.77819 1.19318 1.20621 1.20624 1.20379 0.98838 0.91302 1.08296 1.20901 0.95191 0.94913 0.97083 1.21108 1.01010 0.89992 1.04063 1.16925 0.83170 0.86293 1.03719 1.91515 1.60280 1.65378 1.93770 0.89560 0.89565 0.87246 0.84942 0.84580 0.85906 0.84429 0.95874 0.95870 0.92312 0.85186 0.85684 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.14 101.05 0.92 0.11 16 2 S -0.10 -0.99 22.16 -107.50 -2.38 -3.37 16 3 C -0.14 -1.54 6.12 -38.93 -0.24 -1.78 16 4 C -0.10 -0.94 9.35 -39.43 -0.37 -1.31 16 5 C -0.11 -1.20 9.42 -39.28 -0.37 -1.57 16 6 C 0.01 0.18 5.88 -104.86 -0.62 -0.44 16 7 C -0.13 -1.72 5.88 -104.88 -0.62 -2.34 16 8 C -0.06 -0.83 9.42 -39.27 -0.37 -1.20 16 9 C -0.21 -3.78 9.02 -39.48 -0.36 -4.13 16 10 C 0.17 3.25 6.69 -39.15 -0.26 2.99 16 11 O -0.31 -7.29 10.12 -19.40 -0.20 -7.49 16 12 C 0.19 4.90 4.49 36.00 0.16 5.06 16 13 C -0.53 -14.64 9.43 -34.44 -0.32 -14.97 16 14 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -25.29 13.29 55.43 0.74 -24.56 16 17 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 C -0.17 -2.74 9.97 -39.48 -0.39 -3.13 16 22 C -0.06 -0.86 9.42 -39.27 -0.37 -1.23 16 23 C -0.14 -1.64 9.39 -39.21 -0.37 -2.01 16 24 C 0.12 1.49 7.27 -39.29 -0.29 1.21 16 25 F -0.13 -1.66 16.75 2.25 0.04 -1.62 16 26 H 0.09 0.42 7.74 -51.92 -0.40 0.02 16 27 H 0.09 0.42 7.74 -51.92 -0.40 0.02 16 28 H 0.11 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.13 0.93 5.86 -52.49 -0.31 0.62 16 30 H 0.14 1.20 6.19 -52.49 -0.32 0.88 16 31 H 0.12 1.44 6.19 -52.48 -0.32 1.11 16 32 H 0.14 2.56 6.28 -52.49 -0.33 2.23 16 33 H 0.02 0.62 7.66 -51.93 -0.40 0.22 16 34 H 0.02 0.62 7.65 -51.93 -0.40 0.22 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.13 1.35 6.19 -52.49 -0.32 1.03 16 38 H 0.14 1.43 6.19 -52.49 -0.32 1.11 16 LS Contribution 339.52 15.07 5.12 5.12 Total: -1.00 -29.87 339.52 -9.59 -39.45 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -3.93 Total: -0.17 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: -3.95 Total: -23.20 kcal Atomic # 7 Polarization: -25.29 SS G_CDS: 0.74 Total: -24.56 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.20 Total: -7.49 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -0.99 SS G_CDS: -2.38 Total: -3.37 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.87 -9.59 -39.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242975670.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.835 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds